BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479695
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21710.2 | Symbols: | unknown protein; Has 35333 Blast hits... 1397 0.0
> AT3G21710.2 | Symbols: | unknown protein; Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:7648359-7649799
FORWARD LENGTH=923
Length=923
Score = 1397 bits (756), Expect = 0.0
Identities = 870/922 (94%), Gaps = 20/922 (2%)
Strand=Plus/Plus
Query 1 CTCTACATGATGGATACATTCTCTTGTAATTCTTATGAACAAAACCACCCACATGATGAT 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 16 CTCTACATGATGGATACATTCTCTTGTAATTCTTATGAACAAAACCACCCCCATGATGAT 75
Query 61 GATATTGATATTGATGCTCATGATCATGATTCTCATGGTGGTGATCATCAAGAGGAGAGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 GATATTGATATTGATGCTCATGATCATGATTCTCATGGTGGTGATCATCAAGAGGAGAGT 135
Query 121 GGATGGACAACTTATCTTGATGATTTCTCAAATCAATACAAAACTACTCATCATGAAGAA 180
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 136 GGATGGACAACTTATCTTGATGATTTCTCAAATCAATATAGAACTACTCATCATGAAGAA 195
Query 181 AGTGATCATCAAGAAAAGAGTTCTTGTTCACTTCTTGGCGCCTCTACTTCCCTGGTCTCT 240
| |||||||||||| |||||||||| ||||||||||| | |||||||||| |||||||||
Sbjct 196 AATGATCATCAAGACAAGAGTTCTTATTCACTTCTTGCCACCTCTACTTCTCTGGTCTCT 255
Query 241 GACGCGGCCACCCATGCCTTTTCCGGCAAGAGTTTTCCTGTTAATTTTCCGGC-AAATTT 299
||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||| |
Sbjct 256 GACGCCGCCACCCATGCCTTTTCCGGCAAGAGTTTTCCCGTTAATTTTCCGGCGAAACT- 314
Query 300 GAAGTTTGGGAGGGGAAGAACCAAAAAGATTTGTGAGGATGATTCTTTGGAGGACACGGC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 GAAGTTTGGGAGGGGAAGAACCAAAAAGATTTGTGAGGATGATTCTTTGGAGGACACGGC 374
Query 360 TAGCTCTCCGGTCAACAGCCCTAAGGTCAGTCAGTTTGAACATATTCAGACGCCTCCTAG 419
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 375 TAGCTCTCCGGTCAACAGCCCTAAGGTCAGTCACTTTGAACATATTCAGACGCCTCCTAG 434
Query 420 AAAAATTGAGGACTATGTCTCTTCTAGTTTCGTTATGGGAAATATTAGAGGCATGGGGGA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 AAAAATTGAGGACTATGTCTCTTCTAGTTTCGTTATGGGAAATATTAGAGGCATGGGGGA 494
Query 480 TCATAAAATCCAAATACAAGAAGGTGATGAACAAAAAATGACGCTGATGAGAAATCTCAT 539
|||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 495 TCATCAAATCCAAATACAAGAAGGTGGTGAACAAAAAGTGACGCTGATGAGAAATCTCAT 554
Query 540 TGAAGGAaacaacaacaacaacaacaacaataacaataacaaTATGGATTTGAGGAGTAG 599
||| |||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 555 TGACGGAAACAACAACAACAACAACAACAATA----T--------GGATTTGAGGAGTAG 602
Query 600 AGGATTATGCGTCGTCCCTATCTCCATGTTGGCTAATTATAAAGGTCGCTGCTGAATAAT 659
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 603 AGGATTATGCGTCGTCCCTATCTCCATGTTGGCTAATTTTAACGGTCGCTGCTGAATAAT 662
Query 660 GATAATCGATTCTGTAAACATCCTTAATTAACTATATAAACCCTTGTAAATTTGGTGGTG 719
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 GATAATCAATTCTATAAACATCCTTAATTAACTATATAAACCCTTGTAAATTTGGTGGTG 722
Query 720 TTTATATCCGTACCCATCTTGTATATATGTACTTGATGTGTGTATATATGTACATCTTGA 779
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 TTTATATTCGTACCTATCTTGTATATATGTACTTGATGTGTGTATATATGTACATCTTGA 782
Query 780 TGGGTATGTGCTT-A-ATTACATATGTATAGCTTTTGTGTACATGTATAAAACACATCGG 837
||||||||||||| | || | |||||||||||||| |||||||| |||||||||||||||
Sbjct 783 TGGGTATGTGCTTTACAT-ATATATGTATAGCTTTCGTGTACATATATAAAACACATCGG 841
Query 838 TGGATATGTGTGAAGTATACAACGTCTATGTTTGTAAACATTT-CTAAGAGCTACTATAT 896
||||||||||| ||||| | ||||||||||||| |||||||| ||||||||||||||||
Sbjct 842 TGGATATGTGTAAAGTA--CGACGTCTATGTTTGCAAACATTTTCTAAGAGCTACTATAT 899
Query 897 CATAAGCTATATGAAACTTTTC 918
||||| || ||||||| |||||
Sbjct 900 CATAAACTTTATGAAAGTTTTC 921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44859093271
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5