BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479696
Length=2155
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21720.1 | Symbols: ICL | isocitrate lyase | chr3:7652487-76... 3251 0.0
> AT3G21720.1 | Symbols: ICL | isocitrate lyase | chr3:7652487-7656011
REVERSE LENGTH=2171
Length=2171
Score = 3251 bits (1760), Expect = 0.0
Identities = 2039/2171 (94%), Gaps = 29/2171 (1%)
Strand=Plus/Plus
Query 1 TTTCCCAATGCAGAAATTAGTATATAAGGAGATGATAGGCAAGAAGAGC-AACATGCTTG 59
||| ||||||||||||||||||||||||||||||||||| ||||||||| || |||||||
Sbjct 14 TTTGCCAATGCAGAAATTAGTATATAAGGAGATGATAGGGAAGAAGAGCAAATATGCTTG 73
Query 60 AAGCTTCTC-AAGTTT-ATAGGTCCTTACAAAGCAAAATCATTTCCAATTCATAAAAAGT 117
||||||||| || ||| |||| |||| ||||||||| ||||||||||||| || ||||||
Sbjct 74 AAGCTTCTCTAA-TTTCATAGCTCCTAACAAAGCAATATCATTTCCAATTTAT-AAAAGT 131
Query 118 TAAAGCCATGGCTGCATCTTTCTCTGTCCCCTCTATGATAATGGAAGAAGAAGGGAGATT 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 TAAAGCCATGGCTGCATCTTTCTCTGTCCCCTCTATGATAATGGAAGAAGAAGGGAGATT 191
Query 178 CGAGGCGGAGGTTGCGGAAGTGCAGACTTGGTGG-GCCTCAGAGAGGTTCAAGCTAACAA 236
||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 192 CGAAGCGGAGGTTGCGGAAGTGCAGACTTGGTGGAG-CTCAGAGAGGTTCAAGCTAACAA 250
Query 237 GGCGTCCTTACACTGCCCGTGACGTGGTGGCTCTACGTGGCCATCTCAAGCAAGGCTACG 296
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 251 GGCGCCCTTACACTGCCCGTGACGTGGTGGCTCTACGTGGCCATCTCAAGCAAGGCTATG 310
Query 297 CTTCGAACGAGATGGCTAAGAAGCTGTGGCGAACGCTCAAAAGTCACCAAGCCAACGGCA 356
||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||| |
Sbjct 311 CTTCGAACGAGATGGCTAAGAAGCTGTGGAGAACGCTCAAAAGCCATCAAGCCAACGGTA 370
Query 357 CGGCCTCTCGCACGTTTGGTGCGTTGGACCCTGTTCAGGTGACCATGATGGCTAAACATT 416
||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CGGCCTCTCGCACCTTCGGAGCGTTGGACCCTGTTCAGGTGACCATGATGGCTAAACATT 430
Query 417 TGGACACCATCTACGTCTCTGGTTGGCAGTGCTCGTCAACTCACACCTCCACTAACGAGC 476
||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 431 TGGACACCATCTATGTCTCTGGTTGGCAGTGCTCGTCCACTCACACATCCACTAATGAGC 490
Query 477 CTGGTCCTGATCTTGCTGACTATCCATACGACACCGTTCCTAACAAGGTTGAACACTTAT 536
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| | |
Sbjct 491 CTGGTCCTGATCTTGCTGATTATCCGTACGACACCGTTCCTAACAAGGTTGAACACCTCT 550
Query 537 TCTTCGCTCAGCAGTACCATGACAGAAAGCAGAGGGAAGCAAGAATGAGCATGAGCAGAG 596
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 551 TCTTCGCTCAGCAGTACCATGACAGAAAGCAGAGGGAGGCAAGAATGAGCATGAGCAGAG 610
Query 597 AAGAGAGGACAAAAACTCCGTTCGTGGACTACCTGAAGCCCATCATAGCCGACGGAGACA 656
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 611 AAGAGAGGACAAAAACTCCGTTCGTGGACTACCTAAAGCCCATCATCGCCGACGGAGACA 670
Query 657 CTGG-TTTCGGAGGCACCACCGCCACCGTCAAACTTTGCAAGCTCTTCGTTGAGAGAGGT 715
| || ||| || ||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 671 CCGGCTTT-GGCGGCACCACCGCCACCGTCAAACTCTGCAAGCTTTTCGTTGAAAGAGGC 729
Query 716 GCCGCTGGAGTCCACATCGAGGACCAGTCCTCAGTCACAAAGAAGTGTGGTCACATGGCC 775
|||||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 730 GCCGCTGGGGTCCACATCGAGGACCAGTCCTCCGTCACCAAGAAGTGTGGCCACATGGCC 789
Query 776 GGAAAAGTCCTTGTGGCAGTCAGCGAACACATCAACCGCCTTGTGGCGGCGCGGCTCCAG 835
||||| ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 790 GGAAAGGTCCTCGTGGCAGTCAGCGAACACATCAACCGCCTTGTCGCGGCTCGGCTCCAG 849
Query 836 TTCGACGTGATGGGTACAGAGACCGTCCTGGTCGCTAGAACGGACGCGGTCGCAGCTACT 895
||||||||||||||||||||||||||||| || |||||||| || |||||||||||||||
Sbjct 850 TTCGACGTGATGGGTACAGAGACCGTCCTTGTTGCTAGAACAGATGCGGTCGCAGCTACT 909
Query 896 CTGATCCAGTCGAACATTGACGCGAGGGACCACCAGTTCATCCTCGGTGTCACTAACCCG 955
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 910 CTGATCCAGTCGAACATTGACGCGAGGGACCACCAGTTCATCCTCGGTGCCACTAACCCG 969
Query 956 AGCCTTAGAGGCAAGAGTTTGTCCTCGCTTCTCGCCGAGGGAATGACGGTAGGCAAGAAC 1015
|||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 970 AGCCTTAGAGGCAAGAGTTTGTCCTCGCTTCTGGCTGAGGGAATGACTGTAGGCAAGAAT 1029
Query 1016 GGTCCGGCATTGCAATCCATTGAGGATCAATGGCTTACCTCGGCCGGTCTTATGACTTTC 1075
|||||||| |||||||||||||| ||||| |||||| ||||||||||||||||||||||
Sbjct 1030 GGTCCGGCGTTGCAATCCATTGAAGATCAGTGGCTTGGCTCGGCCGGTCTTATGACTTTC 1089
Query 1076 TCGGAAGCTGTCGTTCAGGCCATCAAGCGCATGAACCTCAACGAGAATGAGAAGAATCAG 1135
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1090 TCGGAAGCTGTCGTGCAGGCCATCAAGCGCATGAACCTCAACGAGAACGAGAAGAATCAG 1149
Query 1136 AGACTGAACGAGTGGCTAACCCATGCAAGGTATGAGAACTGTCTGTCAAATGAGCAAGGC 1195
||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1150 AGACTGAGCGAGTGGTTAACCCATGCAAGGTATGAGAACTGCCTGTCAAATGAGCAAGGC 1209
Query 1196 CGAGAATTAGCAGCAAAACTCGGGGTGACGGATCTCTTCTGGGACTGGGACTTACCAAGA 1255
|||| |||||||||||||| || ||||| ||||| ||||||||||||||||| || |||
Sbjct 1210 CGAGTGTTAGCAGCAAAACTTGGTGTGACAGATCTTTTCTGGGACTGGGACTTGCCGAGA 1269
Query 1256 ACCAGAGAAGGATTCTACCGGTTCCAAGGCTCGGTCGCAGCGGCCGTGGTCCGTGGCTGG 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 ACCAGAGAAGGATTCTACCGGTTCCAAGGCTCGGTCGCAGCGGCCGTGGTCCGTGGCTGG 1329
Query 1316 GCCTTTGCACAAATCGCAGACATCATCTGGATGGAAACCGCAAGCCCTGATCTCAATGAA 1375
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1330 GCCTTTGCACAGATCGCAGACATCATCTGGATGGAAACGGCAAGCCCTGATCTCAATGAA 1389
Query 1376 TGCACCCAGTTCTCAGAAGGTATCAAGTCCAAGACACCGGAGGTCATGCTCGCCTACAAT 1435
|||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1390 TGCACCCAATTCGCCGAAGGTATCAAGTCCAAGACACCGGAGGTCATGCTCGCCTACAAT 1449
Query 1436 CTCTCGCCGTCTTTCAACTGGGACGCTTCCGGTATGACGGATCAGCAGATGGTGGAGTTC 1495
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1450 CTCTCGCCGTCCTTCAACTGGGACGCTTCCGGTATGACGGATCAGCAGATGGTTGAGTTC 1509
Query 1496 ATTCCGCGGATTGCTAGGCTCGGATATTGTTGGCAGTTCATAACGCTTGCGGGTTTCCAT 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1510 ATTCCGCGGATTGCTAGGCTCGGATATTGTTGGCAGTTCATAACGCTTGCGGGTTTCCAT 1569
Query 1556 GCGGACGCTCTTGTGGTTGATACATTTGCAAAGGATTACGCGAGGCGAGGGATGTTGGCT 1615
||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1570 GCGGATGCTCTTGTGGTTGATACATTTGCAAAGGATTACGCTAGGCGCGGGATGTTGGCT 1629
Query 1616 TATGTGGAGAGGATACAGAGAGAAGAGAGGACCCATGGGGTTGACACTTTGGCTCATCAA 1675
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1630 TATGTGGAGAGGATACAAAGAGAAGAGAGGACCCATGGGGTTGACACTTTGGCTCACCAG 1689
Query 1676 AAATGGTCAGGTGCTAATTACTATGATCGTTATCTTAAGACCGTCCAAGGTGGAATCTCC 1735
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1690 AAATGGTCCGGTGCTAATTACTATGATCGTTATCTTAAGACCGTCCAAGGTGGAATCTCC 1749
Query 1736 TCCACTGCAGCAATGGGCAAAGGTGTCACTGAAGAACAGTTCAAGGAGAGTTGGACAAGG 1795
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1750 TCCACTGCAGCCATGGGAAAAGGTGTCACTGAAGAACAGTTCAAGGAGAGTTGGACAAGG 1809
Query 1796 CCGGGAGCTGATGGAATGGGCGAAGGGACTAGCCTTGTGGTCGCCAAGTCCAGAATGTAA 1855
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1810 CCGGGAGCTGATGGAATGGGTGAAGGGACTAGCCTTGTGGTCGCCAAGTCAAGAATGTAA 1869
Query 1856 GACATACGTTCATTGCGGAGGTGCGGCCAGAGCGG--C---ATCTGCGTAGGGAAA-CTT 1909
|||||| ||||||| ||| |||||||||| ||||| | |||| |||||| ||| |||
Sbjct 1870 GACATATGTTCATTACGGCGGTGCGGCCAAAGCGGTGCGGCATCTTCGTAGG-AAAGCTT 1928
Query 1910 GGAAACCACACTATCTTTAATACTATATCTTTGGTCACCCGAGTAA--Gaaaaaaa--GA 1965
||||||||||||||||| |||| ||||||||||| ||||||||||| |||||||| ||
Sbjct 1929 GGAAACCACACTATCTTCAATA-TATATCTTTGGACACCCGAGTAAAAGAAAAAAAAAGA 1987
Query 1966 CAAAAACAGATAATAAATGTATCTTTGTTATTGT-TTTCACTTCTTCTACGTAATAATTG 2024
|| ||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||
Sbjct 1988 CAGAAACAGATAATAAATGTATCTTTGTTATTGTATTTCTCTTCTTCAACGTAATAATTG 2047
Query 2025 GGTTTAAAGGTTTGGGGCAATATTTTATGGGGTTTGCTTCTTTGTATGGATATTTGGAAT 2084
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2048 GGTTAAAAGGTTTGGGGCAATATTTTATGGGGTTTGCTTCTTTGTATGGATATTTGGAAT 2107
Query 2085 TTGGTGTTATCGCCTATCGGCACTGGTTATATAATGATTGATATTCTTATATTATTCGTG 2144
|||||||||| | || | ||||||||| || ||||||||||||||| ||||||||
Sbjct 2108 TTGGTGTTATTGGCT-T------TGGTTATATGATTATTGATATTCTTATAATATTCGTG 2160
Query 2145 ATTCAGTTTCT 2155
|||||||||||
Sbjct 2161 ATTCAGTTTCT 2171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106876960305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5