BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479706
Length=1282
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21865.1 | Symbols: PEX22 | peroxin 22 | chr3:7701025-770338... 1908 0.0
> AT3G21865.1 | Symbols: PEX22 | peroxin 22 | chr3:7701025-7703385
REVERSE LENGTH=1302
Length=1302
Score = 1908 bits (1033), Expect = 0.0
Identities = 1193/1267 (94%), Gaps = 24/1267 (2%)
Strand=Plus/Plus
Query 24 CAGGGA-G-GGCTCGAGAACAGTG-CCAATATCCGAAAGCTGAAGCTAAGAATCTGAAAG 80
|||||| | ||||||||||||||| || ||||| ||||||||||||||||||||| |
Sbjct 52 CAGGGAGGAGGCTCGAGAACAGTGCCCCATATCTGAAAGCTGAAGCTAAGAATCT----G 107
Query 81 TTCGAGTCTTTCGTGATTAAAACGACGACGTATTTGAATTTCGCTTTGAAGGAAAGGTGA 140
|| | |||||| ||||| |||||||||||||||| || ||||||||||||||||||
Sbjct 108 ---GA--CGTTCGTGTTTAAACCGACGACGTATTTGAAATTGGCTTTGAAGGAAAGGTGA 162
Query 141 AATTAATGGCGGAATCGTCGTCGCCGTCGCCTACTGAAGAGATCGTTCGGTTGATTAAGC 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 AATTAATGGCGGAATCGTCGTCGCCGTCGCCTACTGAAGAGATCGTTCGGTTGATTAAGC 222
Query 201 GTTTAAGCGCTTACGTTGCTTTCAAAATGTCAAGCCTTTTCTCTACTTCATCGATTCGCA 260
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
Sbjct 223 GTTTAAGCGCTTACGTTGCTTTCAAAATGTCAAGCCTTTTCTCCACTACATCGATTCGAA 282
Query 261 ATCTGGATTCAAGATCAATTGGTGCGATTGCGGGGCTTGCGATTGCGGTGATTTTTACGT 320
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 283 ATCTGGATTCAAGATCAATTGGTGCGATTGCGGGGCTTGCGATTGCGGTGATATTTACGT 342
Query 321 GGAGGGCGATAAGAACGCCGGGGGAGCAACGTCAAAGAAGGCAGCCGAAGCGTAGGATTA 380
||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 343 GGAGGGCGATAAGAACGCCCGGAGAGCAACGTCAGAGAAGGCAGCCGAAGCGTAGGATTC 402
Query 381 ACAATGCTGAAACGTCTAGtgctgctgctgctgctgctCAGTCGAATGTAGCTTC---GG 437
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||
Sbjct 403 ACAATGCTGAAACGTCTAGTGCTGCTGCTGCTGCTTCTCAGTCGAATCTAGCTTCTTCGG 462
Query 438 T-GCTTCCTGAAGTTTCTTCGCCTCGTGAGGATAACGCGGTGCAAGATGTTGTTGATCAG 496
| ||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 463 TTGCT-CCGGAAGTTTCTTCGCCTCGTGAGGATAATGCGGTGCAAGATGTTGTTGATCAG 521
Query 497 TTCTTTCAACCTGTTAAACCTACATTGGGGCAAATAGTTAGGCAGAAGCTTAGTGAAGGA 556
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 522 TTCTTTCAACCTGTTAAACCTACTTTGGGGCAAATAGTTAGACAGAAGCTTAGTGAAGGA 581
Query 557 AGGAAGGTAACATGCCGTCTTCTTGGAGTAATTCTTGAGGAAACAAGTCCAGAAGAACTC 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 AGGAAGGTAACATGCCGTCTTCTTGGAGTAATTCTTGAGGAAACAAGTCCAGAAGAACTC 641
Query 617 CAAAAACAAGCAACAGTGAGGTCATCTGTTTTGGAAGTTCTCCTAGAGATTACAAAGTAT 676
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 642 CAAAAACAAGCCACAGTGAGGTCATCTGTTTTGGAAGTTCTACTAGAGATTACAAAGTAT 701
Query 677 AGTGATTTATATCTCATGGAAAGAGTTCTTGACGATGAAAGCGAAGCCAAAGTTCTACAG 736
|||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 702 AGTGATTTGTATCTTATGGAAAGAGTTCTTGACGATGAAAGCGAGGCCAAAGTTTTACAG 761
Query 737 GCTTTAGAGAATGCAGGAGTTTTCACATCTGGTGGTTTGGTCAAAGATAAGGTCCTCTTT 796
||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 762 GCTTTAGAGAATGCAGGAGTTTTTACATCTGGTGGTTTAGTCAAAGATAAGGTGCTCTTT 821
Query 797 TGTAGTACAGAGATAGGAAGAACTTCCTTTGTCAGACAACTAGAACCTGACTGGCATATC 856
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 822 TGTAGTACAGAGATAGGAAGAACTTCCTTTGTCAGACAGCTAGAACCTGACTGGCATATT 881
Query 857 GATACAAACCCGGAAATCAGCACACAACTAGCTAGGTTCATCAAATACCAGCTTCACGTC 916
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 882 GATACAAACCCGGAAATCAGCACACAACTAGCTAGGTTCATCAAATATCAGCTTCATGTC 941
Query 917 GCTACGGTGAAACCCGAGCGAACGGCTCCAAATGTGTTCACCTCGCAGTCAATAGAACAG 976
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 942 GCTACGGTGAAACCCGAGCGAACAGCTCCAAATGTGTTCACCTCGCAGTCAATAGAACAG 1001
Query 977 TTCTTTGGAAGTGTTTAATGTCAACAAAAAA-GAGAGGTGAAAGATACTACGTTGTCCTG 1035
||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1002 TTCTTTGGAAGTGTTTAATATCAACAAAAAAAGAGAGGTGAAAGATATTACGTTGTCCTG 1061
Query 1036 ATTTAAGCATCATTGATCGAGTGTCTCTTAGGCTGAAACTTGAAACTTGtttttcatttt 1095
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 ACTTAAGCATCGTTGATCGAGTGTCTCTTAGGCTGAAACTTGAAACTTGTTTTTCATTTT 1121
Query 1096 tcttttATTGTGTCTAAATTAAAGTTTGATATACACTTTGGAGTTAGATATATTATTACT 1155
||||| ||||||||||||||||||||||||||||| ||||||||||||||| | | ||
Sbjct 1122 TCTTTGATTGTGTCTAAATTAAAGTTTGATATACA-TTTGGAGTTAGATAT-T-A---CT 1175
Query 1156 GCGAGTGCCAATGTGAAAGTATCCAAGTTTGTAATTTTTGTATTAGCAACTTAGCACAAG 1215
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1176 GCGAGTGCCTCTGTGAAAGTATCCAAGTTTGTAATTTTTGTATTAGCAACTTAGCAAAAT 1235
Query 1216 TCTTAAAGAAATAAACAAATGTCCTTTATTTAGTCATTAATTCATCGACAAAGTGTGGAA 1275
|||| ||||||||||||||||||| || ||||||||||| ||||||||| |||||||||
Sbjct 1236 TCTTTAAGAAATAAACAAATGTCCGTTGTTTAGTCATTAGTTCATCGACGAAGTGTGGAT 1295
Query 1276 TAGTTCT 1282
|||||||
Sbjct 1296 TAGTTCT 1302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63051884520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5