BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg479709

Length=544
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G21890.1 | Symbols:  | B-box type zinc finger family protein...   614    3e-175


> AT3G21890.1 | Symbols:  | B-box type zinc finger family protein 
| chr3:7709113-7709733 REVERSE LENGTH=621
Length=621

 Score =  614 bits (332),  Expect = 3e-175
 Identities = 458/513 (89%), Gaps = 31/513 (6%)
 Strand=Plus/Plus

Query  27   CAAG-AA-AGATTTAGAAAAATGTGTAGAGGCTTGATCTTTAATGAAGAAGAGAGCAGAA  84
            |||| || ||||| ||||||||||||||||||||||    ||||   |||||||||||||
Sbjct  51   CAAGAAAGAGATTGAGAAAAATGTGTAGAGGCTTGA---ATAAT---GAAGAGAGCAGAA  104

Query  85   GAAGCCACGG-TGATGGTTGCCGGAGTCTTTGCACGAGACCGAGTGTTCCGGTTAGGTGT  143
            ||||  ||||  || |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct  105  GAAGTGACGGAGGA-GGTTGCCGGAGTCTCTGCACGAGACCGAGTGTTCCGGTAAGGTGT  163

Query  144  GAGCTTTGTGGCGGCGATGCCTCCGTGTTCTGTGAGGCTGACTCGGCGTTTCTCTGTAGA  203
            |||||||| | ||| || ||||||||||||||||| || ||||||||||| |||||||||
Sbjct  164  GAGCTTTGCGACGGAGACGCCTCCGTGTTCTGTGAAGCGGACTCGGCGTTCCTCTGTAGA  223

Query  204  AAATGTGACCGGTGGGTTCATGGAGCGAATTTTCTAGCTTGGAGACACGTAAGGCGCGTG  263
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  224  AAATGTGACCGGTGGGTTCATGGAGCGAATTTTCTAGCTTGGAGACACGTAAGGCGCGTG  283

Query  264  CTATGCACTTCTTGTCAGAAACTCACGCGCCGGTGCCTCGTCGGAGATCATGACTTCCAC  323
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  284  CTATGCACTTCTTGTCAGAAACTCACGCGCCGGTGCCTCGTCGGAGATCATGACTTCCAC  343

Query  324  GTTGTTTTACCGTCGGTGACGACGGTGGGAGAAGCCACCGTGGAGAGTAGAAGTGAACAA  383
            |||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||
Sbjct  344  GTTGTTTTACCGTCGGTGACGACGGTCGGAGAAACCACCGTGGAGAATAGAAGTGAACAA  403

Query  384  GATAATCATGAGGTTCCGTTTGTATTTCTCTGAtttttag-ttttttt--t-----CTA-  434
            ||||||||||||||||||||||| ||||||||||| |||| |||||||  |     ||| 
Sbjct  404  GATAATCATGAGGTTCCGTTTGTTTTTCTCTGATTATTAGATTTTTTTGGTGTAAGCTAT  463

Query  435  ----------GGGTTTTTATGCAATTTTCTATTAAGAAAAATCTGGGAAATTT-AATTTT  483
                      |||||||||||||||||||| ||||||||||||||  |||||| ||||||
Sbjct  464  AAATATTCTAGGGTTTTTATGCAATTTTCTTTTAAGAAAAATCTGA-AAATTTTAATTTT  522

Query  484  ATGAAGCTTAGAATTTTAAAAAATGGGTATTGA  516
            ||||||||||||||||||| ||||| ||| |||
Sbjct  523  ATGAAGCTTAGAATTTTAAGAAATGTGTAATGA  555



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26071522293


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5