BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479710
Length=753
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21900.1 | Symbols: | Receptor-like protein kinase-related ... 1026 0.0
AT3G21910.1 | Symbols: | Domain of unknown function (DUF26) | ... 189 3e-47
AT3G21930.1 | Symbols: | Domain of unknown function (DUF26) | ... 108 1e-22
AT3G21920.1 | Symbols: | Domain of unknown function (DUF26) | ... 100 2e-20
> AT3G21900.1 | Symbols: | Receptor-like protein kinase-related
family protein | chr3:7715393-7716343 FORWARD LENGTH=753
Length=753
Score = 1026 bits (555), Expect = 0.0
Identities = 667/721 (93%), Gaps = 8/721 (1%)
Strand=Plus/Plus
Query 23 CGACATGCTTCTTTTTGATCCCTATCTTGGCCATGGTGGCCACACAACTGGTCTTTATGC 82
||||||||||| |||||||| |||| || ||| |||||| ||||||||| |||||||||
Sbjct 17 CGACATGCTTCGTTTTGATCACTATATTTGCCGTGGTGGTAACACAACTGATCTTTATGC 76
Query 83 GCACCGTTTCGTCTTTGAACATGACCAATGCCTATTTGAACCACAAATGCTTAGCCAAAC 142
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 77 GCACCGTTTCGTCCTTGAACATGACCAATGCCTATCTGAACCACAAATGCTTAGCCAATC 136
Query 143 AA-GGAAGATACAAGCCGGGAAGTTGGTATGAGAAACAACTCCAAACTATCATAGTCTCT 201
|| |||| |||||||||||||||||||||||||||| ||||||||| ||| |||||||||
Sbjct 137 AAGGGAA-ATACAAGCCGGGAAGTTGGTATGAGAAAAAACTCCAAAGTATTATAGTCTCT 195
Query 202 ATCGGAAGCGGTGATGGTTTTACCCACGGTTACGACATGATGGGCCTTGGTGATGATTCT 261
||||| ||||||||||||||||||| |||||||||||||||| ||||||| | ||||||
Sbjct 196 ATCGGTAGCGGTGATGGTTTTACCCTTGGTTACGACATGATGGCCCTTGGTAAGGATTCT 255
Query 262 GATTACGTCAG-CGTCACCAACCAGTGCCGCGGGGACTCCTACGGGTCCAAGTGCCGCTC 320
|||||||| || |||||||||||||||||| || |||||| ||||||||| |||||||||
Sbjct 256 GATTACGT-AGCCGTCACCAACCAGTGCCGTGGCGACTCCAACGGGTCCATGTGCCGCTC 314
Query 321 CTGCTTTGCCACCGCCATCGCAgggggggCAATAATATGGTATGACCAATGTACTGTCGA 380
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||| || |
Sbjct 315 CTGCTTTGCCACCGCCATCGCAAGGGGGGCAATAATATGGTACGACCAATGTACTCTCCA 374
Query 381 GATTTCTTCGTTCGATCCTCAAGGAAAGTTCGATAAAGATAACGATTTCTGTATGTCCAA 440
||||||| |||||||| ||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 375 GATTTCTCCGTTCGATACTCAAGGGAAGTTCGACAAAGATAATGATTTCTGTATGTCCAA 434
Query 441 CGCGAAGAAAATGAACGTAGATTCGTTTGGAGAGAAGTGGATGACTTTCCTCGACAATTT 500
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 435 CAAGAAGAAAATGAACGTAGATTCGTTTGGAGAGAAGTGGATGACATTCCTCGACAATTT 494
Query 501 GGTGGGTATAGCCCTCAAAGATTATTTGTATGCCGCGGGGGATACAAGGTTCGGGACGAA 560
||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||
Sbjct 495 GGTAGGTATAGCCCTCAAAGATCATTTGTATGCCGCTGGGGATACAAGGTTCGGGACAAA 554
Query 561 GAAGTTGTACGGGATGGTGCAGTGTAGGAC-TGACATATATAATAATAGTTGTCGAAAGT 619
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||
Sbjct 555 GAAGTTGTACGGGATGGTGCAGTGTAGG-CTTGACATATATAATAATAGTTGTCGAGAGT 613
Query 620 GTGTTGGACACTTAGCCGTGAAATTTCAAGATTGCTGGCATGGTAAACAAGGAGCTAGAG 679
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 614 GTGTTGGACACATAGCCGTAAAATTTCAAGATTGCTGGCATGGTAAACAAGGAGCTAGAG 673
Query 680 T-TATGGGTAGTGGTTGTAACTTTAGGTATGAGCTTTACCCTTTTGTTAGTAGTGCCAAG 738
| | |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 674 TGT-TGGGTAGTGGTTGTAACTTTAGGTATGAGCTTTACCCTTTTGTTGGTAGTAACAAG 732
Query 739 C 739
|
Sbjct 733 C 733
> AT3G21910.1 | Symbols: | Domain of unknown function (DUF26)
| chr3:7717372-7718405 FORWARD LENGTH=837
Length=837
Score = 189 bits (102), Expect = 3e-47
Identities = 278/359 (77%), Gaps = 28/359 (8%)
Strand=Plus/Plus
Query 1 ATGTACTCTTCATCGCCCGTATC--GACATGCTTCTTTTTGATCCCTATCTTGGCCATGG 58
|||||||||| ||| | ||||| ||| ||| ||||| ||| ||| |||||| |||
Sbjct 1 ATGTACTCTTTATCTTCTGTATCAAAACA-CCTT-ATTTTGGTCCATATATTGGCCCTGG 58
Query 59 TGGCCACACAACTGGTCTT-T-ATGCGCACCGTTTCGTCTTTGAACATGACCAATGCCTA 116
||||||||||||| | ||| | || || | ||||||||||||||||||||||||| ||||
Sbjct 59 TGGCCACACAACT-G-CTTCTCATACGTAGCGTTTCGTCTTTGAACATGACCAATTCCTA 116
Query 117 TTTGAACCACAAATGCTTAGCCAAACAA-GGAAGATACAAGCCGGGAAGTTG-GTATGAG 174
| |||||||||||||||| | || ||| |||| ||||||||| ||||| || |||||
Sbjct 117 TCTGAACCACAAATGCTTTGTCAGTCAAGGGAA-ATACAAGCCAGGAAG-TGCACATGAG 174
Query 175 AAACA-ACTCCAAACTATCAT--AGTCTC-TATCGGAAGCGGTGATGGTTTTACCCA-CG 229
||| | || || ||||||| | || | | |||| ||||| | ||| | ||
Sbjct 175 AAA-AGCCTAGAAGCTATCATCCATTC-CATCTCGG--TTGGTGAAAATGTTA-ATAGCG 229
Query 230 GTTACGACATGATGGGC-CTTGGTGATGATTCTGAT-TACGTCAGCG-TCACCAACCAGT 286
||||||||||||| | | ||||||| | | | ||| || ||| ||| | || |||||
Sbjct 230 GTTACGACATGAT-GTCATTTGGTGACGGTCCAGATCTA-GTCTGCGTTGTCC-TCCAGT 286
Query 287 GCCGCGGGGACTCCTACGGGTCCAAGTGCCGCTCCTGCTTTGCCACCGCCATCGCAggg 345
|||| || |||||||||||||||||||||||||||||||||||| | ||||| || |||
Sbjct 287 GCCGTGGTGACTCCTACGGGTCCAAGTGCCGCTCCTGCTTTGCCTCAGCCATGGCCGGG 345
Score = 91.6 bits (49), Expect = 1e-17
Identities = 165/217 (76%), Gaps = 23/217 (11%)
Strand=Plus/Plus
Query 535 GCGGGGGATACA-AGGTTCGGGAC---GAAGAAGTTGTACGGGATGGTGCAGTGTA-GGA 589
|||||||| | | ||| ||||||| ||||||| ||||||| ||||| ||||||| ||
Sbjct 601 GCGGGGGAGA-AGAGGCTCGGGACAAAGAAGAAGATGTACGGAATGGTTCAGTGTACAGA 659
Query 590 CTGACATATATAATAATAG-TTGTCGAAAGTGTGT-TGGACACT--TAGCCGTGAAATTT 645
|||| ||| | ||| | |||| | | | |||| ||| || || | |||| |||
Sbjct 660 -TGACTTATCTGTTAA-GGCTTGT-G-AGGAGTGTCTGGTTGCTAATA-TCTTGAAGTTT 714
Query 646 CAAGATTGCTGG--CA-TGGTAAACAAGGAGCTAGAGTTATGGGTAGTG-GTTGTAACTT 701
||| |||||||| | |||||||| || || || ||| ||| ||| | | ||||||||
Sbjct 715 CAAAATTGCTGGAAAAGTGGTAAACGCGGTGCGAGGGTTTTGGATAG-GAGCTGTAACTT 773
Query 702 TAGGTATGAGCTTTACCCTTTTGTTAGTAGTGCCAAG 738
|||||||||||||||||||||||||| | |||||||
Sbjct 774 TAGGTATGAGCTTTACCCTTTTGTTA--A-TGCCAAG 807
> AT3G21930.1 | Symbols: | Domain of unknown function (DUF26)
| chr3:7723223-7724338 FORWARD LENGTH=903
Length=903
Score = 108 bits (58), Expect = 1e-22
Identities = 161/209 (77%), Gaps = 14/209 (7%)
Strand=Plus/Plus
Query 527 TGTATGCCGCGGGGGATACA-AGGTTCGGGACGAAGAAGT-TGTACGGGATGGTGCAGTG 584
||||||| |||||||| | | || |||||||||| |||| | ||||| |||||||| ||
Sbjct 671 TGTATGCGGCGGGGGAGA-AGAGACTCGGGACGAA-AAGTCTATACGGAATGGTGCAATG 728
Query 585 -TAGGACTGACATATATAATAATAGTTGTCGAAAGTGTGT-TG-GACACTTA-GCCGTGA 640
| || ||||| ||| | | | ||||| || | |||| || | | ||| |||
Sbjct 729 TTCGG-CTGACTTATCTGTTCAGGGTTGT--AATGAGTGTATGTTATA-TTATATAGTGC 784
Query 641 AATTTCAAGATTGCTGGCATGGTAAACAAGGAGCT-AGAGTTATGGGTAGTGGTTGTAAC 699
| |||||||| |||||| | |||||||||||| | |||||| || |||| | ||||||
Sbjct 785 ATTTTCAAGAGTGCTGGGAAAGTAAACAAGGAG-TAAGAGTTTTGAGTAGAAGCTGTAAC 843
Query 700 TTTAGGTATGAGCTTTACCCTTTTGTTAG 728
|||||||||||||||||||||||| ||||
Sbjct 844 TTTAGGTATGAGCTTTACCCTTTTATTAG 872
> AT3G21920.1 | Symbols: | Domain of unknown function (DUF26)
| chr3:7720639-7721744 FORWARD LENGTH=893
Length=893
Score = 100 bits (54), Expect = 2e-20
Identities = 159/208 (76%), Gaps = 14/208 (7%)
Strand=Plus/Plus
Query 527 TGTATGCCGCGGGGGATACA-AGGTTCGGGACGAAGAAGT-TGTACGGGATGGTGCAGTG 584
||||||| |||||||| | | || |||||||||| |||| | ||||| |||||||| ||
Sbjct 658 TGTATGCGGCGGGGGAGA-AGAGACTCGGGACGAA-AAGTCTATACGGAATGGTGCAATG 715
Query 585 -TAGGACTGACATATATAATAATAGTTGTCGAAAGTGTGT-TG-GACACTTA-GCCGTGA 640
| || ||||| ||| | | | ||||| || | |||| || | | ||| |||
Sbjct 716 TTCGG-CTGACTTATCTGTTCAGGGTTGT--AATGAGTGTATGTTATA-TTATATAGTGC 771
Query 641 AATTTCAAGATTGCTGGCATGGTAAACAAGGAGCT-AGAGTTATGGGTAGTGGTTGTAAC 699
| |||||||| |||||| | ||||||||||| | |||||| || |||| | ||||||
Sbjct 772 ATTTTCAAGAGTGCTGGGAAAATAAACAAGGAG-TAAGAGTTTTGAGTAGAAGCTGTAAC 830
Query 700 TTTAGGTATGAGCTTTACCCTTTTGTTA 727
|||||||||||||||||||||||| |||
Sbjct 831 TTTAGGTATGAGCTTTACCCTTTTATTA 858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36570459016
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5