BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg479711

Length=687
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G21910.1 | Symbols:  | Domain of unknown function (DUF26) | ...   739    0.0  


> AT3G21910.1 | Symbols:  | Domain of unknown function (DUF26) 
| chr3:7717372-7718405 FORWARD LENGTH=837
Length=837

 Score =  739 bits (400),  Expect = 0.0
 Identities = 441/461 (96%), Gaps = 2/461 (0%)
 Strand=Plus/Plus

Query  1    ATACGCAGCGTTTCGTCTTTGAACATGACCAATTCGTATCTAAACCACAAATGCTTAGTC  60
            ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct  79   ATACGTAGCGTTTCGTCTTTGAACATGACCAATTCCTATCTGAACCACAAATGCTTTGTC  138

Query  61   AGTCAAGGGAAATACAAGCCAGGAAGTGTGCATGAGAAAAGCCTAGAAGCTATCATCCAT  120
            ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct  139  AGTCAAGGGAAATACAAGCCAGGAAGTGCACATGAGAAAAGCCTAGAAGCTATCATCCAT  198

Query  121  TCCATCTCGGTTGGTGAAAATGTCAATAGCGGTTACGACATGATGTCTTTTGGTGACGGT  180
            ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct  199  TCCATCTCGGTTGGTGAAAATGTTAATAGCGGTTACGACATGATGTCATTTGGTGACGGT  258

Query  181  CCAGATCTAGTCTGCGTTATCCTCCAATGCCGTGGTGACTCCTACGGGTCCAAGTGCCGC  240
            |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct  259  CCAGATCTAGTCTGCGTTGTCCTCCAGTGCCGTGGTGACTCCTACGGGTCCAAGTGCCGC  318

Query  241  TCCTGCTTTGCCTCAGCCATAGCCGGGCTTCGTAGGAGATGTCCGAGATATAAAGGGGGA  300
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  319  TCCTGCTTTGCCTCAGCCATGGCCGGGCTTCGTAGGAGATGTCCGAGATATAAAGGGGGA  378

Query  301  ATAATATGGTTCGACCAATGTCTTCTCGAGATTTCTTCGATCGATACTGTAGGGCAGCTC  360
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  379  ATAATATGGTTCGACCAATGTCTTCTCGAGATTTCTTCGATCGATAATGTAGGGCAGCTC  438

Query  361  AATTACGATGACAGTTTTTGTATGTCCAACGCAAAGAATGTGGGAGATAATCCATAT-CT  419
            ||||||| ||| ||||| |||||||||||||| ||||||||||||||| |||||| | ||
Sbjct  439  AATTACGGTGATAGTTTCTGTATGTCCAACGCGAAGAATGTGGGAGATGATCCATTTTCT  498

Query  420  ATTCATACTGAAGTGGGATACTCTCTTCGACAATATATCAC  460
             ||||||||||||||||||||||||||||||||||||||||
Sbjct  499  -TTCATACTGAAGTGGGATACTCTCTTCGACAATATATCAC  538



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33255005314


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5