BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479712
Length=884
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21930.1 | Symbols: | Domain of unknown function (DUF26) | ... 1262 0.0
AT3G21920.1 | Symbols: | Domain of unknown function (DUF26) | ... 1258 0.0
AT3G21910.1 | Symbols: | Domain of unknown function (DUF26) | ... 254 1e-66
AT3G21900.1 | Symbols: | Receptor-like protein kinase-related ... 78.7 9e-14
> AT3G21930.1 | Symbols: | Domain of unknown function (DUF26)
| chr3:7723223-7724338 FORWARD LENGTH=903
Length=903
Score = 1262 bits (683), Expect = 0.0
Identities = 823/889 (93%), Gaps = 15/889 (2%)
Strand=Plus/Plus
Query 1 AAACACCCCTCTTGG-AA-AC-AA-AAATAGAAAATAAATCCAAAACAATGTATTCTTCA 56
||||||||| ||||| || || || ||||| ||||||||| |||||||||||||||||||
Sbjct 20 AAACACCCCACTTGGAAACACAAATAAATA-AAAATAAATTCAAAACAATGTATTCTTCA 78
Query 57 TCATCTGTATCAAAAGGCTTCGTTCTA-TACGCTATCGTGGTCGTGGTGACCACGCAACT 115
||||||||||||||| ||||||||||| | | |||| ||||||||||||||||| |||||
Sbjct 79 TCATCTGTATCAAAACGCTTCGTTCTAGT-CCCTATTGTGGTCGTGGTGACCACACAACT 137
Query 116 CATGCTCGTACGCAGCGTTTCTTCACTAAACCTTACCAATTCGTATCTCCAGCACAAATG 175
| | || ||||| | ||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 138 CCTCCTGGTACGTAACGTTTCTTCACTAAACCTTACCAATTCGTATCTTCACCACAAATG 197
Query 176 CTTAGTCAGTCTAGGGAAATACAAGCCGGGAAGCGACTACGAGAAATCCCTCGATGATAT 235
| |||||| || ||||||||||||||| |||||| | |||||||||||||||||||||||
Sbjct 198 CGTAGTCAATCAAGGGAAATACAAGCCAGGAAGCAAGTACGAGAAATCCCTCGATGATAT 257
Query 236 CATCCAAAGCTTTTCGAATGAAGATAAAAATTCGTATGGTTACCGTGCCGGTTTCAGCAT 295
||||||||||||||||||| |||||||| |||||||||||| ||| |||||| ||||||
Sbjct 258 CATCCAAAGCTTTTCGAATAAAGATAAAGATTCGTATGGTTTTCGTACCGGTTACAGCAT 317
Query 296 GTCAG-CCTACGGTAAAGAACCTGATATGGTCGCCATCACCTACCAGTGCCGTATCGACT 354
| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 318 GA-AGGCCTACGGTAAAGAACCTGATATGGTCTCCATCACCTACCAGTGCCGTATCGACT 376
Query 355 CTCGCGGGCCCAAGTGCCAATCCTGCGTTGTCACCGCCGGTTATGAGCTTCTTCGTAAGA 414
|||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 377 CTCGTGGGCCCAAGTGCCAGTCCTGCGTTGTCACGGCCGGTTATGAGCTTCTTCGTAAGA 436
Query 415 GATGTCCGAGAGATAAAGGGGCAATAATATGGTACGACCAATGTCTTGTGGAGTTTTCTT 474
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 437 GATGTCCGAGATATAAAGAGGCAATAATATGGTACGACCAATGTCTTGTGGAGTTTTCTT 496
Query 475 CGTCAGATACTTCTGGGCAGATTAATTACGACGACAACTTCTGTATGCCCAGCGCGAAGA 534
||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 497 CGTTAGATACTTCTGGGCAGATCAATTACGACGACAACTTCTGTATGCCTAGCGCGAAGA 556
Query 535 ACCTGATCGGCAATTCAAT-TC-CTTTAGAAGAAAGGTTGCATCTCCTCAACAATCTGAC 592
||||||||||||||||||| || ||| ||||||||||||||||||||||||||||| ||
Sbjct 557 ACCTGATCGGCAATTCAATCTCTCTT--GAAGAAAGGTTGCATCTCCTCAACAATCTTAC 614
Query 593 AAAGATGGCCGTCACTAAAATAGATAAAAACATAGAAGGTATaaaaaaaCCGGTACTGTA 652
|||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 615 AAAGATAGCCGTCACGAAAATAGATAAAAACATAGAAGGTATAAAAAAACCAGTACTGTA 674
Query 653 TGCGGCGGGGGAGAAGAGACTGGGGACGAAGAA-TCTATACGGAATGGTGCAGTGTTCGG 711
||||||||||||||||||||| |||||||| || |||||||||||||||||| |||||||
Sbjct 675 TGCGGCGGGGGAGAAGAGACTCGGGACGAA-AAGTCTATACGGAATGGTGCAATGTTCGG 733
Query 712 CTGACTTATCTGTTCAAGGTTGTAATGAGTGTATGCTATATTATATAGTGCATTTTCAAA 771
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 734 CTGACTTATCTGTTCAGGGTTGTAATGAGTGTATGTTATATTATATAGTGCATTTTCAAG 793
Query 772 AATGCTGGAAAAGTAAACAAGGAGTAAGAGTTTTGAGTAGAAACTGTAACTTTAGGTATG 831
| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 794 AGTGCTGGGAAAGTAAACAAGGAGTAAGAGTTTTGAGTAGAAGCTGTAACTTTAGGTATG 853
Query 832 AGCTTTACCCTTTTATTAACCCGAAGGGTCCTTACTACACCAAGTTCTA 880
|||||||||||||||||| ||| |||||| ||||||| |||||||||||
Sbjct 854 AGCTTTACCCTTTTATTAGCCCCAAGGGTTCTTACTATACCAAGTTCTA 902
> AT3G21920.1 | Symbols: | Domain of unknown function (DUF26)
| chr3:7720639-7721744 FORWARD LENGTH=893
Length=893
Score = 1258 bits (681), Expect = 0.0
Identities = 826/894 (92%), Gaps = 17/894 (2%)
Strand=Plus/Plus
Query 1 AAACACCCCTCTTGG-AA-AC-AA-AAATAGAAAATAAATCCAAAACAATGTATTCTTCA 56
||||||||| ||||| || || || ||||| ||||||||| |||||||||||||||||||
Sbjct 7 AAACACCCCACTTGGAAACACAAATAAATA-AAAATAAATTCAAAACAATGTATTCTTCA 65
Query 57 TCATCTGTATCAAAAGGCTTCGTTCTA-TACGCTATCGTGGTCGTGGTGACCACGCAACT 115
||||||||||||||| ||||||||||| | | |||| ||||||||||||||||| |||||
Sbjct 66 TCATCTGTATCAAAACGCTTCGTTCTAGT-CCCTATTGTGGTCGTGGTGACCACACAACT 124
Query 116 CATGCTCGTACGCAGCGTTTCTTCACTAAACCTTACCAATTCGTATCTCCAGCACAAATG 175
| | || ||||| | ||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 125 CCTCCTGGTACGTAACGTTTCTTCACTAAACCTTACCAATTCGTATCTTCACCACAAATG 184
Query 176 CTTAGTCAGTCTAGGGAAATACAAGCCGGGAAGCGACTACGAGAAATCCCTCGATGATAT 235
| |||||| || ||||||||||||||| |||||| | |||||||||||||||||||||||
Sbjct 185 CGTAGTCAATCAAGGGAAATACAAGCCAGGAAGCAAGTACGAGAAATCCCTCGATGATAT 244
Query 236 CATCCAAAGCTTTTCGAATGAAGATAAAAATTCGTATGGTTACCGTGCCGGTTTCAGCAT 295
||||||||||||||||||| |||||||| |||||||||||| ||| |||||| ||||||
Sbjct 245 CATCCAAAGCTTTTCGAATAAAGATAAAGATTCGTATGGTTTTCGTACCGGTTACAGCAT 304
Query 296 GTCAG-CCTACGGTAAAGAACCTGATATGGTCGCCATCACCTACCAGTGCCGTATCGACT 354
| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 305 GA-AGGCCTACGGTAAAGAACCTGATATGGTCTCCATCACCTACCAGTGCCGTATCGACT 363
Query 355 CTCGCGGGCCCAAGTGCCAATCCTGCGTTGTCACCGCCGGTTATGAGCTTCTTCGTAAGA 414
|||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 364 CTCGTGGGCCCAAGTGCCAGTCCTGCGTTGTCACGGCCGGTTATGAGCTTCTTCGTAAGA 423
Query 415 GATGTCCGAGAGATAAAGGGGCAATAATATGGTACGACCAATGTCTTGTGGAGTTTTCTT 474
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 424 GATGTCCGAGATATAAAGAGGCAATAATATGGTACGACCAATGTCTTGTGGAGTTTTCTT 483
Query 475 CGTCAGATACTTCTGGGCAGATTAATTACGACGACAACTTCTGTATGCCCAGCGCGAAGA 534
||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 484 CGTTAGATACTTCTGGGCAGATCAATTACGACGACAACTTCTGTATGCCTAGCGCGAAGA 543
Query 535 ACCTGATCGGCAATTCAAT-TC-CTTTAGAAGAAAGGTTGCATCTCCTCAACAATCTGAC 592
||||||||||||||||||| || ||| ||||||||||||||||||||||||||||| ||
Sbjct 544 ACCTGATCGGCAATTCAATCTCTCTT--GAAGAAAGGTTGCATCTCCTCAACAATCTTAC 601
Query 593 AAAGATGGCCGTCACTAAAATAGATAAAAACATAGAAGGTATaaaaaaaCCGGTACTGTA 652
|||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 602 AAAGATAGCCGTCACGAAAATAGATAAAAACATAGAAGGTATAAAAAAACCAGTACTGTA 661
Query 653 TGCGGCGGGGGAGAAGAGACTGGGGACGAAGAA-TCTATACGGAATGGTGCAGTGTTCGG 711
||||||||||||||||||||| |||||||| || |||||||||||||||||| |||||||
Sbjct 662 TGCGGCGGGGGAGAAGAGACTCGGGACGAA-AAGTCTATACGGAATGGTGCAATGTTCGG 720
Query 712 CTGACTTATCTGTTCAAGGTTGTAATGAGTGTATGCTATATTATATAGTGCATTTTCAAA 771
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 721 CTGACTTATCTGTTCAGGGTTGTAATGAGTGTATGTTATATTATATAGTGCATTTTCAAG 780
Query 772 AATGCTGG-AAAAGTAAACAAGGAGTAAGAGTTTTGAGTAGAAACTGTAACTTTAGGTAT 830
| |||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 781 AGTGCTGGGAAAA-TAAACAAGGAGTAAGAGTTTTGAGTAGAAGCTGTAACTTTAGGTAT 839
Query 831 GAGCTTTACCCTTTTATTAACCCGAAGGGTCCTTACTACACCAAGTTCTAGAGC 884
||||||||||||||||||||||| ||||||||||| || || |||||||| |||
Sbjct 840 GAGCTTTACCCTTTTATTAACCCTAAGGGTCCTTATTATACAAAGTTCTAAAGC 893
> AT3G21910.1 | Symbols: | Domain of unknown function (DUF26)
| chr3:7717372-7718405 FORWARD LENGTH=837
Length=837
Score = 254 bits (137), Expect = 1e-66
Identities = 620/842 (74%), Gaps = 78/842 (9%)
Strand=Plus/Plus
Query 45 ATGTATTCTTCATCATCTGTATCAAAA-GGCTTCGTTCT-ATACGC-TATCGTGGTCGTG 101
||||| |||| ||| |||||||||||| ||| || | | | | ||| ||| | ||
Sbjct 1 ATGTACTCTTTATCTTCTGTATCAAAACACCTT-ATTTTGGT-C-CATATATTGGCCCTG 57
Query 102 GTGACCACGCAACT-CATGCTCGTACGCAGCGTTTCTTCACTAAACCTTACCAATTCGTA 160
||| |||| ||||| | | ||| |||| |||||||| || | ||| | |||||||| ||
Sbjct 58 GTGGCCACACAACTGC-TTCTCATACGTAGCGTTTCGTCTTTGAACATGACCAATTCCTA 116
Query 161 TCTCCAGCACAAATGCTTAGTCAGTCTAGGGAAATACAAGCCGGGAAGCG-ACTACGAGA 219
||| | ||||||||||| ||||||| ||||||||||||||| ||||| | || | ||||
Sbjct 117 TCTGAACCACAAATGCTTTGTCAGTCAAGGGAAATACAAGCCAGGAAGTGCAC-ATGAGA 175
Query 220 AATCCCTCGATGATATCATCCAAAGCTTTTCGAATGAAGATAAAAATTCGTATGGTTACC 279
|| ||| || | ||||||||| | | ||| || | | |||| | || | ||
Sbjct 176 AAAGCCTAGAAGCTATCATCCATTCCATCTCGGTTG--G-TGAAAA-T-GT-T-AATA-- 226
Query 280 GTGCCGGTTTCAG-CATGTCA-G-CCTACGGTAAAGAACCTGATATGGTC-GCCATCACC 335
| ||||| | | |||| | | | | ||| | | || ||| | ||| || | ||
Sbjct 227 --G-CGGTTAC-GACATG--ATGTCATTTGGTGACGGTCCAGATCTAGTCTGCGTTGTCC 280
Query 336 TACCAGTGCCGT-ATCGACT-CTCGCGGGCCCAAGTGCCAATCCTGCGTTGTCACCGCCG 393
| |||||||||| | |||| || |||| ||||||||| |||||| ||| | | |||
Sbjct 281 T-CCAGTGCCGTGGT-GACTCCT-ACGGGTCCAAGTGCCGCTCCTGCTTTGCCTCAGCC- 336
Query 394 GTTATGAG-C-TTCTTCGTAAGAGATGTCCGAGAGATAAAGGGGCAATAATATGGTACGA 451
||| | | ||||||| ||||||||||||| ||||||||| ||||||||||| |||
Sbjct 337 ---ATG-GCCGGGCTTCGTAGGAGATGTCCGAGATATAAAGGGGGAATAATATGGTTCGA 392
Query 452 CCAATGTCTTGTGGAGTTTTCTTCG-TCAGATACTTCT-GGGCAGATTAATTACGACGAC 509
|||||||||| | ||| |||||||| || |||| | | |||||| | ||||||| ||
Sbjct 393 CCAATGTCTTCTCGAGATTTCTTCGATC-GATA-ATGTAGGGCAGCTCAATTACGGTGAT 450
Query 510 AACTTCTGTATGCCCAGCGCGAAGAACCTGATCGGCA-AT--T-CAATTCCTTT-AGA-A 563
| ||||||||| ||| ||||||||| || | || | || | || || |||| | |
Sbjct 451 AGTTTCTGTATGTCCAACGCGAAGAA--TG-T-GGGAGATGATCCATTTTCTTTCATACT 506
Query 564 GAAAGGTTGCAT-CTC-C-TCAACAATCTGA-CAAAG-ATGGCCGTCACT-AAAATAGAT 617
| || || | || ||| | || ||||| | | | | | || || ||||| |||| | ||
Sbjct 507 G-AA-GTGGGATACTCTCTTCGACAATAT-ATC-ACGTATAGCTATCACTGAAAAGA-AT 561
Query 618 AAAAACATAGAAGGTATaaaaaaaCCGGTACTGTATGCGGCGGGGGAGAAGAGACTGGGG 677
|||||| || ||| || || ||||||| ||| || | ||||||||||||||| || |||
Sbjct 562 AAAAACTTAAAAGATACCAACAAACCGGCACTATACGGGGCGGGGGAGAAGAGGCTCGGG 621
Query 678 AC---GAAGAATCTATACGGAATGGTGCAGTGTTCGGCTGACTTATCTGTTCAAGG-TTG 733
|| |||||| | ||||||||||| |||||| | | ||||||||||||| |||| |||
Sbjct 622 ACAAAGAAGAAGATGTACGGAATGGTTCAGTGTACAGATGACTTATCTGTT-AAGGCTTG 680
Query 734 TAATGAGTGTATGCTAT-ATTATATAGTGCATTTTCAAAAATGCTGGAAAA---GTAAAC 789
| | |||||| || | | | |||| || | |||||||| |||||||||| ||||||
Sbjct 681 TGAGGAGTGTCTGGT-TGCTAATATCTTGAAGTTTCAAAATTGCTGGAAAAGTGGTAAAC 739
Query 790 AAGGAGTAAGAGTTTT-GAGTAGAAACTGTAACTTTAGGTATGAGCTTTACCCTTTTATT 848
|| | || ||||| || ||| | ||||||||||||||||||||||||||||||| ||
Sbjct 740 GCGGTGCGAGGGTTTTGGA-TAGGAGCTGTAACTTTAGGTATGAGCTTTACCCTTTTGTT 798
Query 849 AA 850
||
Sbjct 799 AA 800
> AT3G21900.1 | Symbols: | Receptor-like protein kinase-related
family protein | chr3:7715393-7716343 FORWARD LENGTH=753
Length=753
Score = 78.7 bits (42), Expect = 9e-14
Identities = 69/82 (84%), Gaps = 2/82 (2%)
Strand=Plus/Plus
Query 765 TTTCAAAAATGCTGGAAAAGTAAACAAGGAG-TAAGAGTTTTGAGTAGAAACTGTAACTT 823
|||||| | |||||| | |||||||||||| | ||||| ||| |||| ||||||||
Sbjct 637 TTTCAAGATTGCTGGCATGGTAAACAAGGAGCT-AGAGTGTTGGGTAGTGGTTGTAACTT 695
Query 824 TAGGTATGAGCTTTACCCTTTT 845
||||||||||||||||||||||
Sbjct 696 TAGGTATGAGCTTTACCCTTTT 717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43151132273
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5