BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479715
Length=1175
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21950.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1676 0.0
> AT3G21950.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr3:7734396-7736394
FORWARD LENGTH=1300
Length=1300
Score = 1676 bits (907), Expect = 0.0
Identities = 1103/1194 (92%), Gaps = 28/1194 (2%)
Strand=Plus/Plus
Query 1 TGAAGAGCGTAAACGAAATGATAGTGAAAATGGATTTTCCTGGGTGCATCAAAGTGGCCG 60
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 101 TGAAAAGCGTAAACGAAATGATAGTGAAAATGGATTTTCCTGGTTGCATCAAAGTGGCTG 160
Query 61 ACTTGGGATGTTCTTCCGGAGAAAACACGTTCTTGGTTATGTCTGAAATCGTTAACACAA 120
|||||||||| |||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 161 ACTTGGGATGCTCTTCCGGAGAAAATACATTCTTGGTTATGTCCGAAATCGTTAACACAA 220
Query 121 TCATAACAATATACCAACAAAAGGGTCAAAACCCACCAGAGATCGATTGTTGTCTGAACG 180
|||| |||| |||||||||||| |||||||| | ||| |||||||||||||| |||||||
Sbjct 221 TCATTACAACATACCAACAAAATGGTCAAAATCTACCGGAGATCGATTGTTGCCTGAACG 280
Query 181 ATCTTCCAGACAACGACTTCAACACAACTTTCAAGTTGATCCCTTCCTTCCACGAGAAAC 240
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 281 ATCTTCCAGAGAACGACTTCAACACAACTTTCAAGTTGATCCCTTCCTTCCACGAGAAGC 340
Query 241 TGAAGATGAATATTAAAGGAAAGTGCTTTGTCTCAGGAT-CTCCAGGCTCATTCTACACA 299
||||||||||| |||||||||| |||| ||||||||||| | ||||||||||||||||||
Sbjct 341 TGAAGATGAATGTTAAAGGAAATTGCTATGTCTCAGGATGC-CCAGGCTCATTCTACACA 399
Query 300 AGGCTTTTCCCAAGCAAATCTCTTCATTTTGTCCATTCATCTTTTTGTCTCCACTGGCTT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 400 AGGCTTTTCCCAAGCAAATCTCTTCATTTTGTCCATTCATCTTTTTGTCTCCATTGGCTT 459
Query 360 TCTAAAGTTCCTGATGGGCTTGAGGAAAATAAGAAGAACGTGTATCTTAGAAGTCCATGC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 TCTAAAGTTCCTGATGGGCTTGAGGAAAATAAGAAGAACGTGTATCTTAGAAGTCCATGC 519
Query 420 CCTCCAAATTTGTACGAGAGTTATTTGAATCAGTTTAAGAATGATTTCTCAACGTTTCTA 479
||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||
Sbjct 520 CCTCCAAATTTGTACGAGAGTTATTGGAATCAGTTTAAGAAAGATTTCTCAATGTTTCTA 579
Query 480 AGAATGCGTGCGGAAGAGACAATGCCTAGTGGACGCATGGCTCTCACTTTAGTGGGCAGA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 580 AGAATGCGTGCGGAAGAGACAATGCCTAGTGGACGCATGGCTCTCACTTTAGTTGGCAGA 639
Query 540 AAAACTTTGGACCCTTTATCTAAAGATTGTTTCAAAGATTGGTCGTTGGTATCTGATTCC 599
|||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 640 AAAACTTTGGACCCTTTATCCAAAGAGTGTTTCAAAGATTGGTCGTTGGTTTCTGATTCC 699
Query 600 CTCCTCGATTTGGTGTCTGAGGGAGTTGTGAAGGAATCAGATTTGGAATCTTTCAATTTG 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 700 CTCCTCGATTTGGTGTCTGAGGGAGTTGTGAAGGAATCAGATTTGGAATCTTTCAACTTG 759
Query 660 CCGTATTACAATCCTGATGAAAGTGAGGTGAAGGAAGTTATCGACAACGAGGGCTCATTC 719
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 760 CCGTATTACAGTCCTGATGAAAGTGAGGTGAAGGAAGTTATCGAGAACGAGGGCTCATTC 819
Query 720 GAGATCAATAATTTTGAGACAATATTTGGGCTTCTCTTTTCGTACAAAACTGGTCGTAGT 779
|||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| ||||
Sbjct 820 GAGATCAAAAATTTTGAGACAATATTTGGACTTCTCTTTTCATACAAAACTGGTCATAGT 879
Query 780 GAAGTGAAAGATGATTGTGATGATGATGTGGACCATTCACGTCGATTTGAAGTGGTTAAA 839
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 880 GAAGTGAAAGATGAT-G--ATGATGATGTGGACCATTCACGTCGATTTGAAGTGGTTAAA 936
Query 840 AAGAGGGCTAACCTGGCAAGATCCATCATTGAACCAATGCTTGTTGCTCATTTTGGAGAC 899
| ||||||||| || ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 937 ACGAGGGCTAATATGACAAGATCCATCATTGAACCGATGCTTGTTGCTCATTTTGGAGAA 996
Query 900 GCCATTATCGATCGGCTGTTTGAGAAGTATATATATCATGCAGGCCGACGTTATGATACC 959
|||||||| |||||||| ||||| |||||||||||||||||| | | |||||| ||||||
Sbjct 997 GCCATTATTGATCGGCTCTTTGACAAGTATATATATCATGCATGTCAACGTTACGATACC 1056
Query 960 TTGCGCAACAAACCAACCGTTAATTTCTTTGTTTCGTTAACTAGGAAGTGAAGGATTGTC 1019
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||
Sbjct 1057 TTGCGCAACAAACCAACCGTTAATTTCTTTGTTTCGTTGACTAGGAAGTGATGGATCGTC 1116
Query 1020 GGTCTA---C--C-AATAATTGATGAAAAATAA----T------GATCCTTGGTGAGGAT 1063
| |||| | | ||||||||||||||||||| | |||||||||||| ||
Sbjct 1117 GCTCTATTGCTGCCAATAATTGATGAAAAATAAAGGATAATAATGATCCTTGGTGATGAC 1176
Query 1064 TGGCCAACAAAGCCAAT-T-AATATGTTATTTATTGTGCTTTTAATTTCCCTGTTATGTA 1121
|||| | | ||||||| | ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1177 TGGCTACCCCAGCCAATATTAATATGTTATTTATTGTGCCTTTAATTTCCCTGTTATGTA 1236
Query 1122 TTGTTGTGCTTTAAATGTGTGTTTAATATATGTCAGTATCTATCTCAATAAAAC 1175
||| |||||||| ||||||| || ||| | | || ||||| ||||||||||||
Sbjct 1237 TTGGTGTGCTTTGAATGTGT-TTGAAT-T-T--CATTATCTGTCTCAATAAAAC 1285
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57680426205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5