BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479716
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21970.1 | Symbols: | Domain of unknown function (DUF26) | ... 1378 0.0
AT3G29040.1 | Symbols: | Domain of unknown function (DUF26) | ... 625 3e-178
> AT3G21970.1 | Symbols: | Domain of unknown function (DUF26)
| chr3:7742459-7743601 FORWARD LENGTH=916
Length=916
Score = 1378 bits (746), Expect = 0.0
Identities = 858/911 (94%), Gaps = 12/911 (1%)
Strand=Plus/Plus
Query 1 ATGTTTTCAAATATTTTTGGATCGGTCCCTATCTTGGTCGTGGTGGCTATACAACTTCTC 60
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGTCTTCAAATATTTTTGGATCGGTCCCTATTTTGGTCGTGGTGGCTATACAACTTCTT 60
Query 61 CTTTTACACAATGTTTCTTCCCAGAACGTTACCAATGAGTATTTGAACCACCAATGCAAC 120
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 CTTGTACACAATGTTTCTTCCCAGAACGTTACCAATGACTATTTGAACCACCAATGCAAC 120
Query 121 AACACCCAAGGGAAATACACTCATGGGAGTACGTTCGAGAAGAACCTCAACCAAGTCCTC 180
||||||||||||| |||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 121 AACACCCAAGGGAGATACACGCATGGGAGTACGTTTGAGAAGAACCTCAACCAAGTTCTT 180
Query 181 CATAACATCTCTGACCTCGATCTTAGATACGGTTACGCCTACATCTCCAATGTTGTGGCT 240
|||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 181 CATAACATCTCTAACCTCGATCTTAGATACGGTTACGCCTACGTCTCTAATGTTGTGGCT 240
Query 241 TACAAAGTTAGCAAGGATCCCAACATTGTCTTTGTTTTGCTCCAGTGCCGCGGTGACTCC 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 TACAAAGTTAGCAAGGATCCCAACATTGTCTTCGTTTTGCTCCAGTGCCGCGGTGACTCC 300
Query 301 TTTGGGTCCAAGTGCCACTCCTGCCTTAGGACAGCCGTTTCTGGGCTTCGTGAGAGATGT 360
||||||||||| |||||||||||||| || |||||||| |||||||||||||||||||||
Sbjct 301 TTTGGGTCCAAATGCCACTCCTGCCTCAGCACAGCCGTCTCTGGGCTTCGTGAGAGATGT 360
Query 361 CCGGGAAACAGAGGAGCAACAATATGGTACGACCAATGTCTTTTGGAGATTTCTTCGGTG 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCAGGAAACAGAGGAGCAACAATATGGTACGACCAATGTCTTTTGGAGATTTCTTCGGTG 420
Query 421 GATTCTGAGGGGAGGATCCATTACAAAAGTATGTTCTATATGCAAAACCCAAAGAACGTC 480
||||| ||||||||||||||||||||| |||||||||||||||||||||| | |||||||
Sbjct 421 GATTCCGAGGGGAGGATCCATTACAAACGTATGTTCTATATGCAAAACCCGACGAACGTC 480
Query 481 ACCAACGATCCCAAGCGGTTCGAAGATAAAAGGAGGGATCTCCTCCACAAGCTAATGCTG 540
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 481 ACCAACGATCCCAAACGGTTCGAAGATAAAAGAAGGGATCTCCTCCACAAGCTAATGCTG 540
Query 541 GAAGCCACCAAGGATAGCAAGGAAAATGCCGCCAAGGGACTGTTGTATGCAGTGGGTGAG 600
|||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||
Sbjct 541 GAAGCCACCAAGGATAGCAAGGAAAACGGCGCCAAGGGACTGTTGTACGCAGTGGGTGAG 600
Query 601 ATGAGGATTGGCAGAAATAAGATGTATGCAGTGGTGCAGTGTACGCAAGACTTATGGCAG 660
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 601 ATGAGGATTGGAAGAAATAAGATGTATGCAATGGTGCAGTGTACGCAAGACTTATGGCAG 660
Query 661 ACTGGTTGCCATGTGTGTCTAGAATGGATCACGCAGATGAAATATGGAGAGTACTTCTAC 720
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 661 ACTGGTTGCCATGTGTGTCTAGAATGGATTACGCAGATGAAATATGGAGAGTTCTTCTAC 720
Query 721 CGTAAACCAGGAGGGAGGGTTTATGGTAGGAGTTGTAGCTTTAGGTATGAGCTTTACCCT 780
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 721 CGTAAACCAGGAGGGAGAGTTTGTGGTAGGAGTTGTAGCTTTAGGTATGAGCTTTACCCT 780
Query 781 TTTCTTAGTAGGTAAA-GTACtttttttttttttttCTATTTAATGAGAAGCTCCATTAC 839
|||||||| ||||||| | |||||||| ||| ||||||| | || |||||||| |
Sbjct 781 TTTCTTAGAAGGTAAATG-ACTTTTTTCTTT-----CTATTTAGTCTGA-GCTCCATTTC 833
Query 840 TCTCCCCCTCTCACTCTCTCATATATATTGCGAAGTGTTTAAATAA-GTGCAATGGGCGA 898
|||||||||||||||||||||||||| | ||||||||||||||||| || ||||||| ||
Sbjct 834 TCTCCCCCTCTCACTCTCTCATATAT-T-GCGAAGTGTTTAAATAAAGT-CAATGGGTGA 890
Query 899 ATAAAAAATGT 909
|||||||||||
Sbjct 891 ATAAAAAATGT 901
> AT3G29040.1 | Symbols: | Domain of unknown function (DUF26)
| chr3:11037461-11038440 FORWARD LENGTH=768
Length=768
Score = 625 bits (338), Expect = 3e-178
Identities = 639/780 (82%), Gaps = 37/780 (5%)
Strand=Plus/Plus
Query 30 TATCTTGGTCGTGGTGGCTATACAACTTCTCCTTTTACACAAT-GTTTCTTCCCAGAACG 88
||| |||| | ||||||| || ||||| |||||| ||| | || ||||||||||| ||||
Sbjct 12 TATATTGGCCATGGTGGCCATGCAACTCCTCCTTATACGC-ATAGTTTCTTCCCAAAACG 70
Query 89 TTACCAATGAGTATTTGAACCACCAATGCAACAACACCCAAGGGAAATACACTCATGGG- 147
|||| |||||||||||||||||||||||||||||||| ||||||| |||||| | |||
Sbjct 71 TTACGAATGAGTATTTGAACCACCAATGCAACAACACACAAGGGACATACACGCG-GGGT 129
Query 148 AGTACGTTCGAGAAGAACCTCAACCAAGTCCTCCATAACATCTCTGACCTCGATCTTAGA 207
|||||||| |||||||| |||||||||||| ||| |||||||||| ||||| ||||| |
Sbjct 130 AGTACGTTTGAGAAGAATCTCAACCAAGTCATCCGTAACATCTCTCACCTCCATCTTCGC 189
Query 208 TACGGTTACGCCTACATCTCCAATGTTGTGGCTTACAAAGTTAGCAAGGATCCCAACATT 267
||||||||| |||||| ||||||||||| ||||||| ||||||| || ||||||||||||
Sbjct 190 TACGGTTACACCTACAACTCCAATGTTGAGGCTTACGAAGTTAGTAAAGATCCCAACATT 249
Query 268 GTCTTTGTTTTGCTCCAGTGCCGCGGTGACTCCTTT-GGGTCCAAGTGCCACTCCTGCCT 326
||||| |||||||||||||| || |||||||| || |||||||||||||||||||||||
Sbjct 250 GTCTTCGTTTTGCTCCAGTGTCGTGGTGACTC-TTACGGGTCCAAGTGCCACTCCTGCCT 308
Query 327 T-AGGACAGCCGTT-TCTGGGCTTCGTGAGAGATGTCCGGGAAACAGAGGAGCAACAATA 384
| |||||| || |||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 309 CCAC-ACAGCC-TTCTCTGGGCTTCGTGAGAGATGTCGGGGAAACAAAGGAGCAATAATA 366
Query 385 TGGTACGACCAATGTCTTTTGGAGATTTCTTCGGTGGATTCTGAGGGGAGGATCCATTAC 444
||||||||||||||| |||||||||||||||| ||| || | |||||||||| | ||||
Sbjct 367 TGGTACGACCAATGTGTTTTGGAGATTTCTTCCGTGAATACCAAGGGGAGGATTCGTTAC 426
Query 445 AAAAGTATGTTCTATATG-CAAAACCCAAAGAACGTCACCAACGATCCCAAGCGGTTCGA 503
| ||| | ||| ||||| | || | ||||| || | || | || | ||| ||| |
Sbjct 427 GATAGTTTTTTCAATATGACCAA-CGTGAAGAATGTGAGCAGCAATGCGGAGCAGTTTAA 485
Query 504 AGATAAAAGGAGGGATCTCCTCCACAAGCTAATGCTGGAAGCCACCAAGGATAGCAAG-G 562
| ||||||||| ||||||| ||||||||||| || ||| ||||||||||||| | ||| |
Sbjct 486 AAATAAAAGGAAGGATCTCTTCCACAAGCTATTGTTGGGAGCCACCAAGGAT-GTAAGCG 544
Query 563 AAAATGCCGCCAAGGGACTGTTGTATGCAGTGGGTGAGATGAGGATTGGCAGAAATAAGA 622
| | || || | | || ||| |||||||| |||| |||||| || ||||||||||
Sbjct 545 ACA--GC----AATG-A-TGC-GTACGCAGTGGGGGAGACGAGGATAGGAAGAAATAAGA 595
Query 623 TGTATGCAGTGGTGCAGTGTACGCAAGACTTATGG-CAGACTGGTTGCCATGTGTGTCTA 681
|||||||| || |||||||| | | ||||||| | | || ||| ||| |||||||||||
Sbjct 596 TGTATGCAATGATGCAGTGTGCACTAGACTTAACGAC-GAATGGATGCTATGTGTGTCTA 654
Query 682 GAATGGATCAC-G-CAG--ATGAAATATGGAGAGTACTTCT-ACCGTAAACCAGGAGGGA 736
|||||||| | | ||| |||| || | ||||| | |||||| || |||| ||
Sbjct 655 GAATGGATTATAGGCAGGTATGA--TA-GCTTC-TACTT-TGACCGTAGACAAGGAACGA 709
Query 737 GGGTTTATG-GTAGGAGTTGTAGCTTTAGGTATGAGCTTTACCCTTTTCTTAGTAGGTAA 795
| |||| || |||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 710 GAGTTT-TGAGTAGGAGTTGTAGCTTAAGATATGAGCTTTACCCTTTTCTTAGGAGGTAA 768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44406985948
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5