BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479722
Length=632
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22070.1 | Symbols: | proline-rich family protein | chr3:77... 701 0.0
AT3G22072.1 | Symbols: | other RNA | chr3:7775329-7776207 FORW... 435 3e-121
> AT3G22070.1 | Symbols: | proline-rich family protein | chr3:7775329-7776109
REVERSE LENGTH=781
Length=781
Score = 701 bits (379), Expect = 0.0
Identities = 568/651 (87%), Gaps = 45/651 (7%)
Strand=Plus/Plus
Query 1 ATGCTCTGCTATGTCGGCAAAGCCACCAAGATTTTCATTTTCATCGTCACCGTCGCCGTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 44 ATGCTCTGCTATGTCGGCAAAGCCACCAAGATTTTCATTTTCATCGTCACCGTCGTCTTC 103
Query 61 GTCATTGGCCTCGTCGTAGTTTTCGGTGTTCTCCGCCGTCACTCTCACCACTGTTCCGGC 120
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 104 GTCATTGGCCTCGTCGTAGCCTTCGGTGTTCTCCGCCGTCACTCTCACCACTGCTCCGGC 163
Query 121 GACAATTGCTCATCTTCCACCGAT--C-CTTCTTCTTCTACTTC--CC-CTT-TTATA-- 171
||| |||||||||||||||||||| | ||||||||||| |||| || ||| || ||
Sbjct 164 GACTATTGCTCATCTTCCACCGATCCCTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTACT 223
Query 172 ACT-C---CAT-TC-CCAAACCCAAACCCGAATCCAAACCCGAACCCGAACTCGCCTGTT 225
|| | ||| | ||| ||||||||| || || || || ||||||||| ||||||||
Sbjct 224 TCTCCTTTCATAACTCCATTCCCAAACCCAAACCCGAATCCAAACCCGAACCCGCCTGTT 283
Query 226 CTCGGATCTTCTCCTCCAGCTCCACCTGATTCATCATCATCACCAAACCCATCTACTCCA 285
|||||||||||||||||| ||||| |||| | ||||||| |||||||| ||
Sbjct 284 CTCGGATCTTCTCCTCCATCTCCAACTGA-T--TCATCAT---------CATCTACTTCA 331
Query 286 ATTTCCCCAAATCCGCCGTCGT-CGATCATTAATCCAAATCCACCTCCTCCGTCTACGCC 344
|||||||||||||||||| | | ||||| | ||||| ||| || ||| | || ||
Sbjct 332 ATTTCCCCAAATCCGCCGGC-TCCGATCGTAAATCCGAAT---CCGCCT-C--CT---CC 381
Query 345 TAATCCGAATCCGAATCCTCCGCCGCAATTCTCACCTCCTCCGCCGGATTCT-GAAACAA 403
|||| | |||||||||||||||| |||| ||||||||||||||||||| | || ||||
Sbjct 382 --ATCC-ACTCCGAATCCTCCGCCGGAATTTTCACCTCCTCCGCCGGATT-TAGATACAA 437
Query 404 CCACCGCACCTCCTCCGCCTTCAACGGATATACCAATCACACCACCACCTCCAGCACCAG 463
|||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||
Sbjct 438 CCACCGCACCTCCTCCGCCTTCAACGGATATACCAATCCCACCACCACCTCCGGCTCCAG 497
Query 464 TATCGGCATCTCCACCGTTAACTCCGCCGAGCTCCGTCGTCACTAGTCCTGCTCCTGTGC 523
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 TATCAGCATCTCCGCCGTTAACTCCGCCGAGCTCCGTCGTCACTAGTCCTGCTCCTGTGC 557
Query 524 ATGCCAAGCTAGTCAACGACTAAAGACCAAACCTTTGTAAATTCCGACAttttt-tt-AC 581
||||||||||||||||||| ||||||| |||||||||||||||||||||||||| || ||
Sbjct 558 ATGCCAAGCTAGTCAACGATTAAAGACAAAACCTTTGTAAATTCCGACATTTTTCTTTAC 617
Query 582 TTCACATTTCCCAGTTCTTGAACTTGATTCGTTTGTTTTTTGTTATTTCTA 632
||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 618 TTCACATTTCCCAGTTCTTGAACTTGATTCGTTTGTTTTTTGTTATTCCTA 668
> AT3G22072.1 | Symbols: | other RNA | chr3:7775329-7776207 FORWARD
LENGTH=783
Length=783
Score = 435 bits (235), Expect = 3e-121
Identities = 272/289 (94%), Gaps = 5/289 (2%)
Strand=Plus/Minus
Query 347 ATCCGAATCCGAATCCTCCGCCGCAATTCTCACCTCCTCCGCCGGATTCT-GAAACAACC 405
|||| | |||||||||||||||| |||| ||||||||||||||||||| | || ||||||
Sbjct 400 ATCC-ACTCCGAATCCTCCGCCGGAATTTTCACCTCCTCCGCCGGATT-TAGATACAACC 343
Query 406 ACCGCACCTCCTCCGCCTTCAACGGATATACCAATCACACCACCACCTCCAGCACCAGTA 465
|||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||
Sbjct 342 ACCGCACCTCCTCCGCCTTCAACGGATATACCAATCCCACCACCACCTCCGGCTCCAGTA 283
Query 466 TCGGCATCTCCACCGTTAACTCCGCCGAGCTCCGTCGTCACTAGTCCTGCTCCTGTGCAT 525
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 TCAGCATCTCCGCCGTTAACTCCGCCGAGCTCCGTCGTCACTAGTCCTGCTCCTGTGCAT 223
Query 526 GCCAAGCTAGTCAACGACTAAAGACCAAACCTTTGTAAATTCCGACAttttt-tt-ACTT 583
||||||||||||||||| ||||||| |||||||||||||||||||||||||| || ||||
Sbjct 222 GCCAAGCTAGTCAACGATTAAAGACAAAACCTTTGTAAATTCCGACATTTTTCTTTACTT 163
Query 584 CACATTTCCCAGTTCTTGAACTTGATTCGTTTGTTTTTTGTTATTTCTA 632
||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 162 CACATTTCCCAGTTCTTGAACTTGATTCGTTTGTTTTTTGTTATTCCTA 114
Score = 257 bits (139), Expect = 8e-68
Identities = 206/234 (88%), Gaps = 21/234 (9%)
Strand=Plus/Minus
Query 1 ATGCTCTGCTATGTCGGCAAAGCCACCAAGATTTTCATTTTCATCGTCACCGTCGCCGTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 642 ATGCTCTGCTATGTCGGCAAAGCCACCAAGATTTTCATTTTCATCGTCACCGTCGTCTTC 583
Query 61 GTCATTGGCCTCGTCGTAGTTTTCGGTGTTCTCCGCCGTCACTCTCACCACTGTTCCGGC 120
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 582 GTCATTGGCCTCGTCGTAGCCTTCGGTGTTCTCCGCCGTCACTCTCACCACTGCTCCGGC 523
Query 121 GACAATTGCTCATCTTCCACCGATCC-T-T-CTTCTTCTACTTC--CC-CTT-TT--A-T 170
||| |||||||||||||||||||||| | | |||||||| |||| || ||| || | |
Sbjct 522 GACTATTGCTCATCTTCCACCGATCCCTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTACT 463
Query 171 ---------A-A-CTCCATTCCCAAACCCAAACCCGAATCCAAACCCGAACCCG 213
| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 462 TCTCCTTTCATAACTCCATTCCCAAACCCAAACCCGAATCCAAACCCGAACCCG 409
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30492127229
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5