BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479724 Length=525 Score E Sequences producing significant alignments: (Bits) Value AT3G22090.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 492 2e-138 > AT3G22090.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71470.2); Has 12 Blast hits to 12 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:7782912-7783561 FORWARD LENGTH=542 Length=542 Score = 492 bits (266), Expect = 2e-138 Identities = 394/448 (88%), Gaps = 40/448 (9%) Strand=Plus/Plus Query 1 AAATCGTCTCTT-TTCCGTTTCTTCGAGCTCAAATCCCAACGTCAATGGCGGTTCCGATT 59 |||||| ||||| || ||||||||| |||||||||||||||| ||||||||||||||||| Sbjct 1 AAATCGACTCTTATT-CGTTTCTTCAAGCTCAAATCCCAACGACAATGGCGGTTCCGATT 59 Query 60 CACTTTCTCATCAACTCTCCACATGAATCATCCGACGAAGAGTACAACGGCTT-CGAGAT 118 ||||| |||||||||||||||| ||||||||||||||||||||||||||| || ||| || Sbjct 60 CACTTCCTCATCAACTCTCCACCTGAATCATCCGACGAAGAGTACAACGG-TTCCGAAAT 118 Query 119 TTC---TTCATCTGAAGACGAGTCCATGGAAGACGAATCGTCCGAGTTAGAAAACACAAA 175 ||| ||||||||||||||| || ||||||||||||||||||||||||| ||||||||| Sbjct 119 TTCTAATTCATCTGAAGACGAATCAATGGAAGACGAATCGTCCGAGTTAGTAAACACAAA 178 Query 176 CGGAGGATCTCACTCTTCTCCTCTCTCCAATCTCGTAAACGAAGAAAGTGAGAGTGATGG 235 || ||| | | |||||||||||||||||||||||| | | | || ||| Sbjct 179 CGAAGG-----A------T-CTCTCTCCAATCTCGTAAACGAAG--A---A-ACTG-TGG 219 Query 236 TACTGAGGAAGAGTTTTGGGTTAAGTATCCGTATTTGAAGGAGCTAGTGGAGATTATTGT 295 | | | | ||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 220 -A---A-G--G-GTTTTGGGTTAAGTATCCGTATTTGAAGGAGTTAGTGGAGATTATTGT 271 Query 296 AGCTCAAGGTTTGATTTCTGAAGAAGTAGCTTTTGAGAGAGTTAAGCTTATTGGTGATGA 355 ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 272 AGCTCAAGGTTTGATTTCTGAAGAAGTTGCTTTTGAGAGAGTCAAGCTTATTGGTGATGA 331 Query 356 TAAAGCTAAAGCTAAAGAATTGAATGATGGATGGAAAGCTTTGTGTCTTAAGGAACAGGA 415 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 332 TAAAGCTAAAG----AG--TTGAATGATGGATGGAAAGCTTTGTGTCTTAAGGAACAGGA 385 Query 416 TTTGGGTAATCAGATGCTTGAGCTTCTT 443 |||||||||||||||||||||||||||| Sbjct 386 TTTGGGTAATCAGATGCTTGAGCTTCTT 413 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25117073500 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5