BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg479724

Length=525
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G22090.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   492    2e-138


> AT3G22090.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G71470.2); 
Has 12 Blast hits to 12 proteins in 2 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:7782912-7783561 
FORWARD LENGTH=542
Length=542

 Score =  492 bits (266),  Expect = 2e-138
 Identities = 394/448 (88%), Gaps = 40/448 (9%)
 Strand=Plus/Plus

Query  1    AAATCGTCTCTT-TTCCGTTTCTTCGAGCTCAAATCCCAACGTCAATGGCGGTTCCGATT  59
            |||||| ||||| || ||||||||| |||||||||||||||| |||||||||||||||||
Sbjct  1    AAATCGACTCTTATT-CGTTTCTTCAAGCTCAAATCCCAACGACAATGGCGGTTCCGATT  59

Query  60   CACTTTCTCATCAACTCTCCACATGAATCATCCGACGAAGAGTACAACGGCTT-CGAGAT  118
            ||||| |||||||||||||||| ||||||||||||||||||||||||||| || ||| ||
Sbjct  60   CACTTCCTCATCAACTCTCCACCTGAATCATCCGACGAAGAGTACAACGG-TTCCGAAAT  118

Query  119  TTC---TTCATCTGAAGACGAGTCCATGGAAGACGAATCGTCCGAGTTAGAAAACACAAA  175
            |||   ||||||||||||||| || ||||||||||||||||||||||||| |||||||||
Sbjct  119  TTCTAATTCATCTGAAGACGAATCAATGGAAGACGAATCGTCCGAGTTAGTAAACACAAA  178

Query  176  CGGAGGATCTCACTCTTCTCCTCTCTCCAATCTCGTAAACGAAGAAAGTGAGAGTGATGG  235
            || |||     |      | ||||||||||||||||||||||||  |   | | || |||
Sbjct  179  CGAAGG-----A------T-CTCTCTCCAATCTCGTAAACGAAG--A---A-ACTG-TGG  219

Query  236  TACTGAGGAAGAGTTTTGGGTTAAGTATCCGTATTTGAAGGAGCTAGTGGAGATTATTGT  295
             |   | |  | ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  220  -A---A-G--G-GTTTTGGGTTAAGTATCCGTATTTGAAGGAGTTAGTGGAGATTATTGT  271

Query  296  AGCTCAAGGTTTGATTTCTGAAGAAGTAGCTTTTGAGAGAGTTAAGCTTATTGGTGATGA  355
            ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct  272  AGCTCAAGGTTTGATTTCTGAAGAAGTTGCTTTTGAGAGAGTCAAGCTTATTGGTGATGA  331

Query  356  TAAAGCTAAAGCTAAAGAATTGAATGATGGATGGAAAGCTTTGTGTCTTAAGGAACAGGA  415
            |||||||||||    ||  |||||||||||||||||||||||||||||||||||||||||
Sbjct  332  TAAAGCTAAAG----AG--TTGAATGATGGATGGAAAGCTTTGTGTCTTAAGGAACAGGA  385

Query  416  TTTGGGTAATCAGATGCTTGAGCTTCTT  443
            ||||||||||||||||||||||||||||
Sbjct  386  TTTGGGTAATCAGATGCTTGAGCTTCTT  413



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25117073500


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5