BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479725
Length=1671
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22104.1 | Symbols: | Phototropic-responsive NPH3 family pr... 1142 0.0
> AT3G22104.1 | Symbols: | Phototropic-responsive NPH3 family
protein | chr3:7789376-7792380 FORWARD LENGTH=2160
Length=2160
Score = 1142 bits (618), Expect = 0.0
Identities = 699/738 (95%), Gaps = 5/738 (1%)
Strand=Plus/Plus
Query 82 ACTAATTTGTGGGTGCTTCACCAATAGACTTGACAGACATCAAAAGAGAAGACTTATACA 141
||||||||||||||||||| | ||| |||||||||||||||| ||||||||||||||| |
Sbjct 165 ACTAATTTGTGGGTGCTTCTCTAATTGACTTGACAGACATCATAAGAGAAGACTTATATA 224
Query 142 AAATCTGACAATCACAAAACCAACAAAAGtttcttgcttctttgctctttgtcttctttc 201
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 GAATCTGACAATCACAAAACCAACAAAAGTTTCTTGCTTCTTTGCTCTTTGTCTTCTTTC 284
Query 202 tcttctCAGCATAAATCCACACCTCTCTCTCCACTGTTACTCACTTCTTTCACCACATTT 261
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 285 TCTTCTCAGCATAAATCCACACCTCTCTCTCTACTGTTACTCACCTCTTTCACCACATTT 344
Query 262 CTTTTCTCTTTTGGGGGAAAAATCAAGAAA-AA-GAGAGATAGAATCTAGTTCTACCCAA 319
||||||||||||||||||| |||||||||| || ||||| ||||||||||||||| ||||
Sbjct 345 CTTTTCTCTTTTGGGGGAAGAATCAAGAAAGAAAGAGAGCTAGAATCTAGTTCTATCCAA 404
Query 320 GAGTGttttt-agtttctttctctttttttGGCTATGGAAGCTTGTTGCTCTGATCTTGA 378
|||||||||| |||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 405 GAGTGTTTTTTAGTTTCTTTCTCCTTTTTGGGATATGGAAGCTTGTTGCTCTGATCTTGA 464
Query 379 AGTAGACATCAATGGAGAAGAAACTATCTTTCTCAATAAGCAAATCATCTGTGCTTATTC 438
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 465 AGTAGACATCAATGGAGAACAAACTATCTTTCTCAATAAGCAAATCATATGTGCTTATTC 524
Query 439 TGGAACGTTAAGGAAA-CTTTTGGGGAAATCAACTTGTTCCAATGGAAATCTCAAGGTGA 497
|||||||||||| ||| |||||||||||||||||| |||||| |||||||||||||||||
Sbjct 525 TGGAACGTTAAG-AAAGCTTTTGGGGAAATCAACTAGTTCCAGTGGAAATCTCAAGGTGA 583
Query 498 TCTTTAATGATTTCCCCGGTGGAGGGGAGAGTTTCGAGCTTGTTTCGAGATTTTGCTACA 557
|||| ||||||||||||||||||| |||||||||||| |||| ||||| ||||||||||
Sbjct 584 TCTTCAATGATTTCCCCGGTGGAGCTGAGAGTTTCGAGTTTGTATCGAGGTTTTGCTACA 643
Query 558 ATAACGGTGGATTAGCTGTGATGCCTTCGAATGTAGTTTTCTTGCATTGTGCTGCTAAGT 617
|| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 ATGACGGTCGAGTAGCTGTGATGCCTTCGAATGTAGTTTTCTTGCATTGTGCTGCTAAGT 703
Query 618 TTATGGAAATCACTAAAGTCTTGGAACAAACAGAGAAGTGTATGGAAGAGATTCGGTATT 677
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 704 TTATGGAAGTCACTAAAGTCTTGGAACAAACAGAGAAGTGTATGGAAGAGATTAGGTATT 763
Query 678 GGGCTTGGCCAGAGGTTCTTCTCTGTTTAAAACAGTGTCAAGAAGTTGAAACATCGCCCG 737
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 764 GGGCTTGGCCAGAGGTTCTTCTTTGTCTAAAACAGTGTCAAGAAGTTGAAACATCGCCCG 823
Query 738 AAGCTGATTCTTTAGCCGCGAAACTGATGGATGCGTTAGTGGAGAAACTGTGTTTAACTA 797
||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 824 AAGTTGATTCTTTAGCCGCGAAACTGATGGATGCGTTGGTGGAGAAACTGTGTTTAACCA 883
Query 798 TTGAAATGAGTCCTTCTA 815
||||||||||||||||||
Sbjct 884 TTGAAATGAGTCCTTCTA 901
Score = 1064 bits (576), Expect = 0.0
Identities = 769/855 (90%), Gaps = 42/855 (5%)
Strand=Plus/Plus
Query 846 CAACACTAGACAATCTTCTTGTTACATCTCCATCGAAATCGAGTCACTTGTACTATGTGA 905
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1316 CAACACTAGACAATCTTCTTGTTCCATCTCCATCGAAATCGAGTCACTTGTACTATGTGA 1375
Query 906 ATCTCGTTCTTAGATTCACAAAAGCTTTCCTCGACGGAGAAAGAGGAGGATTGCAATTGA 965
|||| |||||||||||||||||||||||||| || || | |||| | |||||||||||||
Sbjct 1376 ATCTTGTTCTTAGATTCACAAAAGCTTTCCTAGATGGGGCAAGAAGTGGATTGCAATTGA 1435
Query 966 AGAAAGTCTCAAGCTTGATTGATCAATACATAGCTGAAGTAGCACCTGATCCTTGCTTGA 1025
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 AGAAAGTCTCAAGTTTGATTGATCAATACATAGCTGAAGTAGCACCTGATCCTTGCTTGA 1495
Query 1026 AACCTTCAAAGTTTCTGTCTCTCCTCACACTTGTTCCAGATTCAGCCAGAGAATCCCACG 1085
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1496 AACCTTCAAAGTTTCTTTCTCTCATCACACTTGTTCCAGATTCAGCCAGAGAATCCCACG 1555
Query 1086 AAGAAATATATCGTGCTATCGATATGTATCTCGAGGCTCACACAGGATTAAATGATGGCG 1145
|||| ||||| |||||||| ||||||||||||||||||||||||||| || ||||||||
Sbjct 1556 AAGATATATACCGTGCTATTGATATGTATCTCGAGGCTCACACAGGAACAACTGATGGCG 1615
Query 1146 AAAAACTCAACTTGATACGAACATTAAGTTACGAAAAGCTTTCAGGAGAATCAAGAGCAC 1205
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct 1616 AAAAACTCAACTTGATACGAACTTTAAGTTACGAGAAGCTTTCAGGAGAATCAAGAGCTC 1675
Query 1206 ACATTTCCCGTAACACGAA-GTTTCAGGCAATTGAGACACTAGATGAACAACAACAACAA 1264
||||||| |||||| | || ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1676 ACATTTCGCGTAAC-CAAAAGTTTCAGGCTATTGAGACACTAGATGAACAACAACAACAA 1734
Query 1265 C--C----------------GAAGCAGCTCATACTCCGAATGGAGAAGAATGAGATTTCA 1306
| | |||||||||||||||| ||||||||||| ||||| ||||
Sbjct 1735 CAACAACAACAACAACAACAGAAGCAGCTCATACTCAGAATGGAGAAGGTTGAGACTTCA 1794
Query 1307 GGAGAAAAAGAGAAGCTGAAGGAACATATTGAAGGGATTCAGTGGCGGGTAATGGAGTTG 1366
|||||||| |||||||||||||||||||| ||||||||||| ||| |||||||||| |||
Sbjct 1795 GGAGAAAACGAGAAGCTGAAGGAACATATCGAAGGGATTCAATGGAGGGTAATGGAATTG 1854
Query 1367 GAGAGAGCGTGTTTGAAAATGCAGAATCAAATGGAAGTTATCAAAAAGAGATCCAAGAGC 1426
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1855 GAGAGAGCTTGTTTGAAAATGCAGAATCAAATGGAAGTTATCAAGAAGAGATCCAAGAGC 1914
Query 1427 TCGAGCAAAGGAAGTAACAGATCACTTCCTAAGCTCTGTTCTTGATTTAGTGAAGCTGTA 1486
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1915 TCGAGCAAAGGAAGTAATAGATCACTTCCTAAGCTCTGTTCTTGATT-AGTGAAGCTGTA 1973
Query 1487 -GCTTACAAGATCATATTTGTACATAAAGAGTGATAGAGAGCATAAGGAGTCAACAATTA 1545
|||||| ||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1974 AGCTTAC--GATCATATTTGTACATA--GAGTGATAGAGAGCATAAGGAGTCAA---TTA 2026
Query 1546 TAGTTACAATTTGTTTCTTATGTTTC----T-T--ATCTTTTCTTGTGTTGTTTACT--G 1596
||||||| ||||| |||||||||||| | | ||||||||||||||||||| || |
Sbjct 2027 TAGTTACCATTTGGTTCTTATGTTTCAGAGTATTTATCTTTTCTTGTGTTGTTTTCTTTG 2086
Query 1597 TCACAACAGTTGTTCGTAAGGAAAAGTAAAGATAGATTCGATTTGATGGAGATGTTGATA 1656
|||||| |||||| ||||| |||||||||||||| ||||| ||| ||||||||| |||
Sbjct 2087 TCACAA-AGTTGTGCGTAATGAAAAGTAAAGATAAATTCGTTTTTATGGAGATG---ATA 2142
Query 1657 CAAACTTAAACCTAT 1671
|||||||||| ||||
Sbjct 2143 CAAACTTAAATCTAT 2157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82579896525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5