BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479726 Length=1002 Score E Sequences producing significant alignments: (Bits) Value AT3G22110.1 | Symbols: PAC1 | 20S proteasome alpha subunit C1 |... 1360 0.0 > AT3G22110.1 | Symbols: PAC1 | 20S proteasome alpha subunit C1 | chr3:7792638-7794165 REVERSE LENGTH=1039 Length=1039 Score = 1360 bits (736), Expect = 0.0 Identities = 809/845 (96%), Gaps = 1/845 (0%) Strand=Plus/Plus Query 158 GTCGTCTTTACCAGGTAGAGTATGCTATGGAGGCCATTGGAAACGCTGGTTCTGCAATTG 217 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 152 GTCGTCTTTACCAGGTAGAGTATGCTATGGAGGCCATTGGAAACGCCGGTTCTGCGATTG 211 Query 218 GAATCTTATCCAAAGACGGAGTTGTGTTGATCGGTGAGAAGAAAGTCACCTCTAAGCTTC 277 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 212 GAATCTTATCCAAAGACGGTGTTGTGTTGATCGGTGAGAAGAAAGTCACCTCAAAGCTTC 271 Query 278 TTCAAACCTCAACCTCTGCTGAGAAAATGTACAAGATTGATGACCATGTTGCCTGTGCTG 337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 272 TTCAAACCTCAACCTCTGCTGAGAAAATGTACAAGATTGATGACCATGTTGCCTGTGCTG 331 Query 338 TTGCTGGTATAATGTCTGATGCTAACATACTCATCAACACGGCACGAGTCCAAGCTCAAC 397 ||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||| Sbjct 332 TTGCTGGTATAATGTCTGATGCTAACATACTTATCAACACGGCTCGAGTTCAAGCTCAAC 391 Query 398 GTTACACCTTCATGTACCAAGAGCCCATGCCGGTTGAGCAGCTGGTTCAATCTCTCTGTG 457 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 392 GTTACACCTTCATGTACCAAGAGCCCATGCCGGTTGAGCAGCTGGTTCAATCTCTTTGTG 451 Query 458 ACACAAAACAAGGCTACACACAATTCGGTGGTCTTCGCCCATTTGGTGTCTCCTTTCTCT 517 ||||||||||||| |||||||| || |||||||||||||| ||||||||||||||||||| Sbjct 452 ACACAAAACAAGGATACACACAGTTTGGTGGTCTTCGCCCGTTTGGTGTCTCCTTTCTCT 511 Query 518 TTGCAGGATGGGACAAGAACTATGGGTTCCAGCTATATATGAGTGACCCGAGTGGGAACT 577 ||||||||||||||||| || |||| |||||||| ||||||||||||||||||||||||| Sbjct 512 TTGCAGGATGGGACAAGCACCATGGTTTCCAGCTTTATATGAGTGACCCGAGTGGGAACT 571 Query 578 ATGGTGGTTGGAAAGCTGCAGCTGTTGGGGCAAACAATCAGGCGGCTCAGTCTATTCTGA 637 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 572 ATGGTGGTTGGAAAGCTGCAGCTGTTGGAGCAAACAATCAGGCGGCTCAGTCTATCCTGA 631 Query 638 AACAAGACTATAAGGACGATGCAACCAGGGAAGAAGCAGTCGAGCTCGCCTTGAAGGTTC 697 |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 632 AACAAGACTACAAGGACGATGCAACCAGGGAAGAAGCAGTCGAGCTTGCCTTGAAGGTTC 691 Query 698 TGACCAAGACAATGGACAGCACTAGCTTAACATCTGAGAAGCTAGAGCTTGCTGAGGTGT 757 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 692 TGACCAAGACAATGGACAGCACTAGCTTAACATCTGAGAAGCTAGAGCTTGCTGAAGTGT 751 Query 758 ATCTGACTCCATCCGGGAATGTTAAGTACCATGTTCACTCACCTGAGTCGCTCACCAAGC 817 |||||||||||||| || ||||||||||||||||||||||||||||||||||||||| | Sbjct 752 ATCTGACTCCATCCAAGACTGTTAAGTACCATGTTCACTCACCTGAGTCGCTCACCAAAC 811 Query 818 TGTTGGTCAAGCATGGTGTGACTCAACCGGCTGCTGAAACATCCTGAGCTCAAAAGAATC 877 ||||||||||||| |||||||||||||| |||||||||||||| | ||| |||||| ||| Sbjct 812 TGTTGGTCAAGCACGGTGTGACTCAACCCGCTGCTGAAACATCTTAAGCCCAAAAGTATC 871 Query 878 TCTAGTCTTTATTCGCCTGGTACGGTGTCTCGGCTCTATGTTTGTAGTTCTCTGTTTTAC 937 ||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 872 TCTAGTCTT-ATTCGCCTGGTACGGTGTCTCCGCTTTATGTTTGTAGTTCTCTGTTTTAC 930 Query 938 AGCTTTCCTTTTGGTTTGAACTTTGAAGTTAACTATGGCGATGAAACTAGATTTGACAAT 997 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 931 AGCTTTCCTTTTGGTTTGAACTTTGAAGTTACCTTTGGCGATGAAACTAGATTTGACAAT 990 Query 998 GTTAT 1002 ||||| Sbjct 991 GTTAT 995 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49078761619 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5