BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479726
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22110.1 | Symbols: PAC1 | 20S proteasome alpha subunit C1 |... 1360 0.0
> AT3G22110.1 | Symbols: PAC1 | 20S proteasome alpha subunit C1
| chr3:7792638-7794165 REVERSE LENGTH=1039
Length=1039
Score = 1360 bits (736), Expect = 0.0
Identities = 809/845 (96%), Gaps = 1/845 (0%)
Strand=Plus/Plus
Query 158 GTCGTCTTTACCAGGTAGAGTATGCTATGGAGGCCATTGGAAACGCTGGTTCTGCAATTG 217
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 152 GTCGTCTTTACCAGGTAGAGTATGCTATGGAGGCCATTGGAAACGCCGGTTCTGCGATTG 211
Query 218 GAATCTTATCCAAAGACGGAGTTGTGTTGATCGGTGAGAAGAAAGTCACCTCTAAGCTTC 277
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 212 GAATCTTATCCAAAGACGGTGTTGTGTTGATCGGTGAGAAGAAAGTCACCTCAAAGCTTC 271
Query 278 TTCAAACCTCAACCTCTGCTGAGAAAATGTACAAGATTGATGACCATGTTGCCTGTGCTG 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 TTCAAACCTCAACCTCTGCTGAGAAAATGTACAAGATTGATGACCATGTTGCCTGTGCTG 331
Query 338 TTGCTGGTATAATGTCTGATGCTAACATACTCATCAACACGGCACGAGTCCAAGCTCAAC 397
||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 332 TTGCTGGTATAATGTCTGATGCTAACATACTTATCAACACGGCTCGAGTTCAAGCTCAAC 391
Query 398 GTTACACCTTCATGTACCAAGAGCCCATGCCGGTTGAGCAGCTGGTTCAATCTCTCTGTG 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 392 GTTACACCTTCATGTACCAAGAGCCCATGCCGGTTGAGCAGCTGGTTCAATCTCTTTGTG 451
Query 458 ACACAAAACAAGGCTACACACAATTCGGTGGTCTTCGCCCATTTGGTGTCTCCTTTCTCT 517
||||||||||||| |||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 452 ACACAAAACAAGGATACACACAGTTTGGTGGTCTTCGCCCGTTTGGTGTCTCCTTTCTCT 511
Query 518 TTGCAGGATGGGACAAGAACTATGGGTTCCAGCTATATATGAGTGACCCGAGTGGGAACT 577
||||||||||||||||| || |||| |||||||| |||||||||||||||||||||||||
Sbjct 512 TTGCAGGATGGGACAAGCACCATGGTTTCCAGCTTTATATGAGTGACCCGAGTGGGAACT 571
Query 578 ATGGTGGTTGGAAAGCTGCAGCTGTTGGGGCAAACAATCAGGCGGCTCAGTCTATTCTGA 637
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 572 ATGGTGGTTGGAAAGCTGCAGCTGTTGGAGCAAACAATCAGGCGGCTCAGTCTATCCTGA 631
Query 638 AACAAGACTATAAGGACGATGCAACCAGGGAAGAAGCAGTCGAGCTCGCCTTGAAGGTTC 697
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 632 AACAAGACTACAAGGACGATGCAACCAGGGAAGAAGCAGTCGAGCTTGCCTTGAAGGTTC 691
Query 698 TGACCAAGACAATGGACAGCACTAGCTTAACATCTGAGAAGCTAGAGCTTGCTGAGGTGT 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 692 TGACCAAGACAATGGACAGCACTAGCTTAACATCTGAGAAGCTAGAGCTTGCTGAAGTGT 751
Query 758 ATCTGACTCCATCCGGGAATGTTAAGTACCATGTTCACTCACCTGAGTCGCTCACCAAGC 817
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
Sbjct 752 ATCTGACTCCATCCAAGACTGTTAAGTACCATGTTCACTCACCTGAGTCGCTCACCAAAC 811
Query 818 TGTTGGTCAAGCATGGTGTGACTCAACCGGCTGCTGAAACATCCTGAGCTCAAAAGAATC 877
||||||||||||| |||||||||||||| |||||||||||||| | ||| |||||| |||
Sbjct 812 TGTTGGTCAAGCACGGTGTGACTCAACCCGCTGCTGAAACATCTTAAGCCCAAAAGTATC 871
Query 878 TCTAGTCTTTATTCGCCTGGTACGGTGTCTCGGCTCTATGTTTGTAGTTCTCTGTTTTAC 937
||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 872 TCTAGTCTT-ATTCGCCTGGTACGGTGTCTCCGCTTTATGTTTGTAGTTCTCTGTTTTAC 930
Query 938 AGCTTTCCTTTTGGTTTGAACTTTGAAGTTAACTATGGCGATGAAACTAGATTTGACAAT 997
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 931 AGCTTTCCTTTTGGTTTGAACTTTGAAGTTACCTTTGGCGATGAAACTAGATTTGACAAT 990
Query 998 GTTAT 1002
|||||
Sbjct 991 GTTAT 995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49078761619
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5