BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479732
Length=2555
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22180.1 | Symbols: | DHHC-type zinc finger family protein ... 3860 0.0
> AT3G22180.1 | Symbols: | DHHC-type zinc finger family protein
| chr3:7827036-7830813 FORWARD LENGTH=2580
Length=2580
Score = 3860 bits (2090), Expect = 0.0
Identities = 2436/2595 (94%), Gaps = 55/2595 (2%)
Strand=Plus/Plus
Query 1 GAGAGGCGATATTTTCTCAGTCTCTCTTTCCTTTTTCCGCGAGCAACAACACTCTTCACT 60
||||| |||||||||||||||| | |||||| ||||| |||||||||||||||||||||
Sbjct 1 GAGAGACGATATTTTCTCAGTC-C-CTTTCCCTTTTCAACGAGCAACAACACTCTTCACT 58
Query 61 TAATCACTCCGGCGGTGGCG-ACGGCAACGTGACGGAGACGTTGTCGTAAAATTAGGGTT 119
||||| |||||||||||||| ||||||||||||||| |||||||||| |||||||| |||
Sbjct 59 TAATCGCTCCGGCGGTGGCGAACGGCAACGTGACGGTGACGTTGTCGGAAAATTAGAGTT 118
Query 120 TATCTT-TCCTGGCTTATTGTTGTTGGAGAAGAAGGTATGGTGAGGAAACACGGTTGGCA 178
| | || || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TGT-TTATCTTTGCTTATTGTTGTTGGAGAAGAAGGTATGGTGAGGAAACACGGTTGGCA 177
Query 179 ACTTCCCGCTCACACTCTTCAGGTGATTGCAATTACGGTGTTTTGCTTGTTGGTGGTCGC 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 ACTTCCCGCTCACACTCTTCAGGTGATTGCAATTACGGTGTTTTGCTTGTTGGTGGTCGC 237
Query 239 TTTCTATGCTTTCTTCGCTCCTTTTGTTGGAGGTCGTATTTGGGAATACGTTTTGATCGG 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TTTCTATGCTTTCTTCGCTCCTTTTGTTGGAGGTCGTATTTGGGAATACGTTTTGATCGG 297
Query 299 TGTTTACTCTCCTGTGGCTATTCTTGTGCTTGTTTTGTATGTTCGGTGTACTGCAATCAA 358
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 298 TGTTTACTCTCCCGTGGCTATTCTTGTGTTTGTTTTGTATGTTCGGTGTACTGCAATCAA 357
Query 359 TCCTGCGGATCCAAGGATCATGTCGATATTTGATACAGGCGTGAACAGAGATGATATGGT 418
|||||||||||| || ||||||||||||||||||||||||||||| |||||| |||||
Sbjct 358 TCCTGCGGATCCGAGAATCATGTCGATATTTGATACAGGCGTGAATGGAGATGGCATGGT 417
Query 419 TGGTGCCTTATCGAGGAATTTTGATGAAGCTGGTAGTCAGTTGCAGGCTTCTCCTTCAGT 478
| ||| |||||| ||||||| ||||||| |||||||||||||||||||||||||||| ||
Sbjct 418 TCGTGGCTTATCAAGGAATTATGATGAAACTGGTAGTCAGTTGCAGGCTTCTCCTTCGGT 477
Query 479 TGTCAGCAGGAGTTCTACCGTAGCAGGAAACTCTAGTGTGAAAGGTTCTGTAGAAGATTC 538
|||||| |||||||||||||| || ||||||||||||||||||||||||||||||||| |
Sbjct 478 TGTCAGTAGGAGTTCTACCGTGGCTGGAAACTCTAGTGTGAAAGGTTCTGTAGAAGATGC 537
Query 539 TCAAAGAGTGGAATCTGTGAGAAGAAGATCTTGCTATAATCCTCTGGCTA-TCTTCTGTT 597
|||||||||||||||||| || |||||||||||||||||||||||||| | | |||||||
Sbjct 538 TCAAAGAGTGGAATCTGTAAGTAGAAGATCTTGCTATAATCCTCTGGC-AGTTTTCTGTT 596
Query 598 ACGTGTTTGTTTTGGAAGACTGCCG-AAAACAGGAAGGGGCGGCGGAACAAGAAGGAAAC 656
| ||||||||| ||||||||||||| |||| |||||||| |||||||| || ||||||||
Sbjct 597 ATGTGTTTGTTGTGGAAGACTGCCGGAAAA-AGGAAGGGCCGGCGGAAGAACAAGGAAAC 655
Query 657 AGCGAAGAGGCTCTGTTTTGCACATTGTGCAATTCTGAGGTACGCAAGTTCAGCAAGCAT 716
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 656 AGCGAAGAGGCTCTGTTTTGCACATTGTGCAATTGTGAGGTACGCAAGTTCAGCAAGCAT 715
Query 717 TGTCGGAGTTGTGATAAATGTGTTGACTGTTTTGATCACCATTGCAAGTGGCTTAACAAT 776
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 716 TGTCGAAGTTGTGATAAATGTGTTGATTGTTTTGATCACCATTGCAAGTGGCTTAACAAT 775
Query 777 TGCGTCGGTCGTAAAAACTACGTGACTTTTGTCTCTCTGATGAGTGCCAGTCTTCTCTGG 836
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 776 TGTGTCGGTCGTAAAAACTATGTGACTTTTGTCTCTCTGATGAGTGCCAGTCTTCTCTGG 835
Query 837 CTCATTATTGAAGCAGCAGTTGGAATTGCAGTCATAGTGCGTGTATTTGTTAATAAGCAG 896
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 836 CTCATTATTGAAGCAGCAGTTGGAATTGCAGTTATAGTGCGTGTATTTGTTAATAAGCAG 895
Query 897 AGCATGGAAACTGAAATTGTCAATAGACTTGGAAATAGTTTCTCTCGTGCCCCTTTGGCG 956
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 896 ACCATGGAAACTGAAATTGTCAATAGACTTGGAAATAGTTTCTCTCGTGCACCTTTGGCG 955
Query 957 GCAGTTGTTGGTCTTTGCACTGCTGTTGCCATTTTGGCATGTTTTCCACTGGGTGAACTT 1016
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 956 GCAGTTGTTGGTCTTTGCACTGCTGTTGCCATTTTCGCATGTTTTCCACTGGGTGAACTT 1015
Query 1017 CTCTTTTTCCACATGCTTCTCATTAAAAAGGGAATTACAACATATGAGTATGTTGTGGCA 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CTCTTTTTCCACATGCTTCTCATTAAAAAGGGAATTACAACATATGAGTATGTTGTGGCA 1075
Query 1077 ATGAGAGCCATGAGCGAGGCGCCAGATGGAGCATCTGTTGACGAGGAAATTCAGAATGTG 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 ATGAGAGCCATGAGCGAGGCGCCAGATGGAGCATCTGTTGACGAGGAAATTCAGAATGTG 1135
Query 1137 CTCTATTCTCCCACTGGGTCTGCTACAACCGGCTTTAGTGGTGGAAGCTCTCTCGGTTTA 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 CTCTATTCTCCCACTGGGTCTGCTACAACCGGCTTTAGTGGTGGAAGCTCTCTCGGTTTA 1195
Query 1197 CCATACAAGGGGGTCTGGTGCACTCCACCTAGAGTGTTTGATAATCAGGATGAAGTCATT 1256
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 CCATACAGGGGGGTCTGGTGCACTCCACCTAGAGTGTTTGATAATCAGGATGAAGTCATT 1255
Query 1257 CCCCATTTAGACCCTCGCATGGTCCCGTCGACCGTAGATCCAGATGCACCTGGATCAGAG 1316
|| |||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1256 CCTCATTTAGACCCTTGCATGGTCCCGTCAACCGTAGACCCAGATGCACCTGGATCAGAG 1315
Query 1317 AAAGGCACCAAGGCTCTGAAAAGACCTGTCAAACGTAGTGCATGGAAGCTTGCAAAGTTG 1376
|||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1316 AAAGGCACTAAGGCTCTGAAAAGACCTGTAAAACGTAATGCATGGAAGCTTGCAAAGTTG 1375
Query 1377 GATCCAAATGAAGCTGCAAGAGCAGCTGCCAGAGCCAGAGCGTCATCATCTGTCCTAAGA 1436
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1376 GATCCAAATGAAGCTGCAAGGGCAGCTGCCAGAGCCAGAGCGTCATCATCTGTCCTAAGA 1435
Query 1437 CCAATAGATAATCGCCATTTACCTGATAGTGAACTTAGTTCCATTGGCACACTTAGTATC 1496
|| ||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||
Sbjct 1436 CCGATAGATAATCGCCATTTACCTGATAATGATCTTAGTTCCATTGGCACAGTTAGTATC 1495
Query 1497 ATCAGTAGTGTAAGCACAGATGCAAATGTGGCTGCAAATAAAGAGATAAGGAACAATGAT 1556
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1496 ATCAGTAGTGTAAGCACAGATGCAAATGTGGCTGCAAGTAAAGAGATAAGGAACAATGAT 1555
Query 1557 CTAATGTCATCTCTTTCTAGAAACTCCTTTGCTCCAAGCCAAAGTAGCCGGGATGAGTAT 1616
|||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1556 CTAAGGTCATCTCTTTCTAGAAACTCGTTTGCTCCAAGCCAAGGTAGCCGGGATGAGTAT 1615
Query 1617 GACACAGGGAGCCATGGTATGAGCAATCTTAGCAGTCCAAGCCATGTTCACGAGTCTGTC 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 GACACAGGGAGCCATGGTATGAGCAATCTTAGCAGTCCAAGCCATGTTCACGAGTCTGTC 1675
Query 1677 ACACTTGCTCCGCTCCCTCAGAATCCTACAATAGTCGGCAATCGCTTCACTGCAACAAAC 1736
||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||| |
Sbjct 1676 ACACTTGCTCCACTCCCTCAAAATCCTACAATAGTTGGCAATCGCTTCACTGCAACAAGC 1735
Query 1737 CACCACATGCACTCAACCTTTGATGATAAGGTGCTGCACAGAGGAAACGACGCGGATCCA 1796
|| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1736 CATCACATGCACTCGACCTTTGATGATAAGGTTCTGCACAGAGGAAACGACGCGGATCCG 1795
Query 1797 CTATTTCTCTCTGCTCCTGCAACTTCTCATCTGAGGGATGTGAGAAAGACATCAGTTGTT 1856
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 CTATTTCTCTTTGCTCCTGCAACTTCTCATCTGAGGGATGTGAGAAAGACATCAGTTGTT 1855
Query 1857 TGGGATCCAGAAGCTGGGAGATATGTATCAGCTCCTGTAACGACAACATCTGAGGTCCGC 1916
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1856 TGGGATCCAGAAGCTGGGAGATATGTATCAGCTCCTGTAACAACAACATCTGAAGTCCGC 1915
Query 1917 AACAGATTGCTAAATCCTAGCTCACAAACAGCCAGCACTCAGAATCCAAGACCCATTCTT 1976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916 AACAGATTGCTAAATCCTAGCTCACAAACAGCCAGCACTCAGAATCCAAGACCCATTCTT 1975
Query 1977 CCAGCTCATGATTCTTCTTCTGGATCATCAGCACTAAGGGATCCTCTTCCTATGCACCAA 2036
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1976 CCAGCTCATGATTCTTCTTCTGGATCATCAGCACTAAGGGATCCTCTTCCTCTGCACCAA 2035
Query 2037 GCCGAGAGAAGACTGACATATACAGGTGACTCTATCTTCTATGGAGGCCCACTGATTAAT 2096
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 2036 GCCGAGAGAAGACTGACATATACAGGTGACTCTATCTTTTATGGAGGCCCTTTGATTAAT 2095
Query 2097 ATTCCGACTAGAGATACCCCGAGAAGCGGAAGGGGCTTGGTAAGAGAGGTACAAGACAGA 2156
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2096 ATTCCGACTAGAGATACCCCGAGAAGCGGAAGGGGCTTGGTAAGAGATGTACAAGACAGA 2155
Query 2157 TTGGCATCAACAGTTCATCGAGATGCAAGA-TTCAGAAAGGATTCAACCTCAAACCAGCT 2215
|||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||
Sbjct 2156 TTGGCATCAACAGTTCATCGAGATGCAAGAATT-AGAAGGGATTCAACCTCAAACCAGCT 2214
Query 2216 TCCCGTGTTTGCCCCTGGAGGTCTTGGTACAAATTCC------GGTTCTAACATCAAGTA 2269
||| ||||||||||||||||||||||| |||| ||| |||||||||||||||||
Sbjct 2215 TCCGGTGTTTGCCCCTGGAGGTCTTGGGGCAAACTCCCAAACCGGTTCTAACATCAAGTA 2274
Query 2270 GATACACCGACTGTATTTCTTGAAAGGCTCTGATCTTCTACAAAACACCTTCCCAATTCC 2329
||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2275 GATACACTGATTGTATTTCTTGAAAGGCTCTGATCTTCTACAAAACGTCTTCCCAATTCC 2334
Query 2330 TGGAGAGGCTCAAAATCAATGGGGTCTGTGCTGTGT-GA-GCA--T-T--GA--A--A-- 2376
|||||||||||| ||| ||||| ||| |||||||| | | | | | || | |
Sbjct 2335 TGGAGAGGCTCATTATCCATGGGTTCTTTGCTGTGTTGCCGGAACTCTATGAGGATTAAA 2394
Query 2377 -TTTGAGTTTC-----C--TGGAATTTGTGCGAAGTTCGCGGTCATTTCTCAACGT-A-- 2425
|||||||||| | ||||||||||||||||||| | ||||||| ||| || |
Sbjct 2395 GTTTGAGTTTCTGAGTCACTGGAATTTGTGCGAAGTTCCCAGTCATTTTTCAGTGTTAGA 2454
Query 2426 -TAGGACTAATTTTCTTGCA-TGGATTTTGAG-TTCCTT-TGAAATCCA-AAATGTCATC 2480
|||||||||||||||| || ||||||| ||| ||| || | ||| || ||||||||||
Sbjct 2455 GTAGGACTAATTTTCTTACAATGGATTT-GAGCTTC-TTGT-AAA-CCTGAAATGTCATC 2510
Query 2481 ACTTTTGATTCTTCCAGAAAAGAAAACCATTCATGTAAATTCTTCTTTCACTTATCTCTG 2540
| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2511 AATATTGATTCTTCCAGAAAA-----CCATTCATGTAAATTCTTCTTTCACTTATCTCTG 2565
Query 2541 CATTTTCATTTCTAG 2555
|||||||||||||||
Sbjct 2566 CATTTTCATTTCTAG 2580
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126822031904
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5