BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479734
Length=1727
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22200.2 | Symbols: POP2 | Pyridoxal phosphate (PLP)-depende... 2388 0.0
AT3G22210.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 278 2e-73
> AT3G22200.2 | Symbols: POP2 | Pyridoxal phosphate (PLP)-dependent
transferases superfamily protein | chr3:7835144-7838888
FORWARD LENGTH=1880
Length=1880
Score = 2388 bits (1293), Expect = 0.0
Identities = 1429/1497 (95%), Gaps = 0/1497 (0%)
Strand=Plus/Plus
Query 130 AGGTTAATTTGCAGAGTAGGCATGCCACTTGCATGTCTGGGAACTCTACTTCCAGGAGGA 189
||||| ||||||| |||| | ||||||||||||||||||||||||| |||||||||||||
Sbjct 384 AGGTTCATTTGCACAGTAAGTATGCCACTTGCATGTCTGGGAACTCCACTTCCAGGAGGA 443
Query 190 TCTTCACTACTGAGGCAGCACCTGAGAAGCTAAACTCTGTTAGGTCTAAGGGGCATGATA 249
| ||||||||||||||||||||||||||| |||| ||||| ||||||| ||||||||||
Sbjct 444 TTTTCACTACTGAGGCAGCACCTGAGAAGAAAAACACTGTTGGGTCTAAAGGGCATGATA 503
Query 250 TGCTTGCACCTTTTACTGCTGGCTGGCAGAGTGCTGATTTAGATCCCTTGGTCATCGCTA 309
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
Sbjct 504 TGCTTGCACCTTTTACTGCTGGATGGCAGAGTGCTGATTTAGATCCCTTGGTCATTGCAA 563
Query 310 AGTCTGAGGGATGTTATGTGTATGATGCCAATGGGAAAAAGTATCTTGATTCTCTTGCTG 369
||||||||||| ||||||||||||||| | ||||||||| |||||||| ||||| ||||
Sbjct 564 AGTCTGAGGGAAGTTATGTGTATGATGATACTGGGAAAAAATATCTTGACTCTCTCGCTG 623
Query 370 GTCTATGGTGTACTGCCTTAGGAGGAAATGAGCCACGGCTTGTTTCTGCTGCTGTTGAGC 429
|| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
Sbjct 624 GTTTATGGTGTACTGCCTTAGGAGGAAATGAGCCAAGGCTTGTTTCTGCCGCTGTTGAAC 683
Query 430 AGTTGAACACCTTGCCGTTTTATCACTCCTTTTGGAACCGTACTACTAAACCTTCACTGG 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 684 AGTTGAACACCTTGCCGTTTTATCACTCCTTTTGGAACCGTACTACTAAACCTTCTCTGG 743
Query 490 ATCTTGCTAAGGATCTTTTAGAGATGTTCACGGCCAACAAAATGACCAAAGCATTTTTTA 549
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 744 ATCTTGCTAAGGTTCTTTTAGAGATGTTCACGGCCAACAAAATGGCCAAAGCATTTTTTA 803
Query 550 CAAGCGGTGGATCAGATGCCAACGATACCCAGGTCAAGCTGGTTTGGTATTACAATAACG 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 CAAGCGGTGGATCAGATGCCAACGATACCCAGGTCAAGCTGGTTTGGTATTACAATAACG 863
Query 610 CACTTGGAAGGCCTGAGAAGAAAAAATTTATCGCGAGAAATAAATCGTACCATGGCTCCA 669
||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 864 CACTTGGAAGGCCCGAGAAGAAAAAGTTTATCGCGAGAAAGAAATCGTACCATGGCTCCA 923
Query 670 CTCTAATATCAGCAAGTTTGTCCGGCCTTCCGCCGCTGCACCATAATTTTGATTTACCTG 729
||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 924 CTCTAATATCAGCAAGTTTGTCCGGCCTTCCCCCGCTACACCAAAATTTTGATTTACCTG 983
Query 730 CACCATTTGTGCTGCACACAGATTGCCCTCATTATTGGCGTTTTCATCTTCCAGGCGAAA 789
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 CACCATTTGTGTTGCACACAGATTGCCCTCATTATTGGCGTTTTCATCTTCCAGGCGAAA 1043
Query 790 CCGAAGAGGAGTTCTCCACCAGATTAGCCAAGAATTTAGAGGATCTAATCATCAAAGAAG 849
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 CGGAAGAGGAGTTCTCAACCAGATTAGCCAAGAATTTAGAGGATCTAATCATCAAAGAAG 1103
Query 850 GACCAGAAACTATTGGTGCTTTTATAGCTGAACCAGTCATGGGTGCTGGGGGTGTGATAC 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 GACCAGAAACTATTGGTGCTTTTATAGCTGAACCAGTCATGGGTGCTGGGGGTGTGATAC 1163
Query 910 CTCCACCTGCTACTTACTTTGAAAAGGTCCAAGCTGTTGTTAAGAAGTATGATATCTTGT 969
||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1164 CTCCACCTGCTACCTACTTTGAAAAGGTTCAAGCTGTTGTTAAGAAATATGATATCTTGT 1223
Query 970 TCATTGCTGATGAGGTGATATGTGCATTTGGAAGGCTCGGGACAATGTTTGGCTGTGACA 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 TCATTGCTGATGAGGTGATATGTGCATTTGGAAGGCTCGGGACAATGTTTGGCTGTGACA 1283
Query 1030 AATACAACATTAAGCCAGATCTTGTGACCTTAGCTAAGGCACTGTCTTCAGCATATATGC 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1284 AATACAACATTAAGCCAGATCTTGTGACCTTAGCTAAGGCACTGTCTTCAGCATATATGC 1343
Query 1090 CGATTGGAGCCATTCTTATGAGTCAAGAAGTGGCAGATGTCATTTATTCTCAAAGCAACA 1149
|||||||||||||||||||||| |||||||||||||||||||| ||||||| |||| ||
Sbjct 1344 CGATTGGAGCCATTCTTATGAGCCAAGAAGTGGCAGATGTCATAAATTCTCATAGCAGCA 1403
Query 1150 AGCTAGGCATTTTCTCGCATGGATTTACTTATTCTGGTCATCCAGTTTCATGTGCTGTAG 1209
|||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1404 AGCTAGGCGTTTTCTCCCATGGATTTACTTATTCTGGTCATCCAGTTTCGTGTGCTGTAG 1463
Query 1210 CAATCGAAGCATTAAAGATATACAAGGAGAGGAACATACCAGCGTATGTCGCCAAAGTTG 1269
|||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1464 CAATTGAAGCGTTAAAGATATACAAGGAGAGGAACATACCAGAGTATGTCGCCAAAGTTG 1523
Query 1270 CCCCAAGGTTTCAAGATGGACTTAAAGCTTTTGCCTCTAGTAGTCCTATTATTGGAGAGA 1329
|||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||
Sbjct 1524 CCCCAAGGTTTCAAGATGGAGTTAAAGCGTTTGCCTCTGGTAGTCCTATTATTGGAGAGA 1583
Query 1330 TAAGAGGAACAGGTTTGATTCTCGGGACTGAGTTTGTAGACAATAAATCCCCAAACGAAC 1389
||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 1584 CAAGAGGAACAGGTTTGATTCTTGGGACTGAGTTTGTAGACAATAAATCTCCGAACGAAC 1643
Query 1390 CATTTCCACCAGAATGGGGTGTTGGCGCATACTTTGGAGCCGAGTGCCAGAAGCGCGGGA 1449
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1644 CATTTCCACCAGAATGGGGTGTTGGCGCATTCTTTGGAGCCGAGTGCCAGAAGCACGGGA 1703
Query 1450 TGTTAGTCCGTGTTGCAGGTGATAGCATAATGATGTCTCCACCGCTCATTATCTCACCTG 1509
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1704 TGTTAGTCCGTGTTGCAGGTGATGGCATTTTGATGTCTCCACCGCTCATTATCTCACCTG 1763
Query 1510 AAGAGATCGATGAGTTGATTTCTATCTATGGGAAAGCATTGAAGGCAACGGAAGAGAAAG 1569
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1764 AAGAGATTGATGAGTTGATTTCTATCTATGGGAAAGCATTGAAGGCAACGGAAGAGAAGG 1823
Query 1570 TAAAAGAACTCAAGACTCAGCACAAGAAGTGAGAAGCAGAGTCCAAATGATGTTGAT 1626
|||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||
Sbjct 1824 TAAAAGAACTCAAGGCTCAGCACAAGAAGTGAAAAGCAGAGTCAAAATGATGTTGAT 1880
> AT3G22210.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant
structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast
hits to 26 proteins in 13 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:7838784-7839467 REVERSE
LENGTH=597
Length=597
Score = 278 bits (150), Expect = 2e-73
Identities = 196/216 (91%), Gaps = 12/216 (6%)
Strand=Plus/Minus
Query 1522 AGTTGATTTCTATCTATGGGAAAGCATTGAAGGCAACGGAAGAGAAAGTAAAAGAACTCA 1581
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 597 AGTTGATTTCTATCTATGGGAAAGCATTGAAGGCAACGGAAGAGAAGGTAAAAGAACTCA 538
Query 1582 AGACTCAGCACAAGAAGTGAGAAGCAGAGTCCAAATGATGTTGATGAAAA-TGttttttt 1640
|| ||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||
Sbjct 537 AGGCTCAGCACAAGAAGTGAAAAGCAGAGTCAAAATGATGTTGATGAAAAATGTTTTTT- 479
Query 1641 tAGATTCTCAAAGTTTGGATCTTTTGTTTTT------AACACACAA---GTCTTTTAATA 1691
|||||||||||||||||||| ||||||||| ||||||||| |||||| ||||
Sbjct 478 -AGATTCTCAAAGTTTGGATCCTTTGTTTTTTTTTTTAACACACAACAAGTCTTTAAATA 420
Query 1692 AGTGCATTTTAATGAGAAATAAACAATAATGGGACA 1727
||| |||||||||||| |||||||||||||||||||
Sbjct 419 AGTACATTTTAATGAGGAATAAACAATAATGGGACA 384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85391127045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5