BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479736
Length=607
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22230.1 | Symbols: | Ribosomal L27e protein family | chr3:... 885 0.0
AT4G15000.1 | Symbols: | Ribosomal L27e protein family | chr4:... 544 5e-154
> AT3G22230.1 | Symbols: | Ribosomal L27e protein family | chr3:7843967-7844597
REVERSE LENGTH=631
Length=631
Score = 885 bits (479), Expect = 0.0
Identities = 570/612 (93%), Gaps = 14/612 (2%)
Strand=Plus/Plus
Query 1 ATAAAGACAATCGTCTCAACAATTAGGGTTTCTTCTTTGCGGTGTGAGAAAGAAACAATG 60
|||||||||||| |||| ||||||||||||||||||||||||| | | ||||||||||
Sbjct 1 ATAAAGACAATCATCTCTTCAATTAGGGTTTCTTCTTTGCGGTG-GTG--AGAAACAATG 57
Query 61 GTGAAGTTTCTGAAGCAGAACAAGGCCGTGATCCTCCTTCAAGGCCGTTACGCCGGTAAG 120
||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 58 GTGAAGTTTCTGAAGCAGAACAAAGCGGTGATCCTCCTTCAAGGCCGTTACGCCGGCAAA 117
Query 121 AAGGCAGTGATCATCAAATCCTTCGACGACGGAACCAGTGACCGTCGTTACGGACACTGC 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 118 AAGGCAGTGATCATCAAATCCTTCGATGACGGAACCAGTGACCGTCGTTACGGACACTGC 177
Query 181 CTCGTCGCCGGACTGAAGAAGTATCCAAGCAAAGTCATCCGCAAAGACTCAGCGAAGAAG 240
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 178 CTCGTCGCCGGACTGAAGAAGTACCCGAGCAAAGTCATCCGCAAAGACTCAGCGAAGAAG 237
Query 241 ACGGCGAAGAAGTCTCGAGTGAAATGTTTCATCAAACTCGTGAATTACCAGCATCTGATG 300
||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 238 ACGGCGAAGAAATCAAGAGTGAAATGTTTCATCAAGCTCGTGAATTACCAGCATCTGATG 297
Query 301 CCTACACGTTACACGCTCGATGTAGATCTGAAGGAAGTTGCGACTCTTGATGCTCTTAAG 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 298 CCTACACGTTACACGCTCGATGTAGATCTGAAGGAAGTAGCGACTCTTGATGCTCTTAAG 357
Query 361 AGTAAAGATAAGAAGGTGACTGCTCTTAA-GGAAGCTAAGGCTAAGCTTGAGGAGAGGTT 419
||||| |||||||||||||||||| |||| |||||||||||||||||||||||| | |||
Sbjct 358 AGTAAGGATAAGAAGGTGACTGCT-TTAAAGGAAGCTAAGGCTAAGCTTGAGGA-ACGTT 415
Query 420 -CAAGACTGGCAAGAACAGGTGGTTCTTTACTAAGCTCAGGTTCTGAAGAAGAATCTTTG 478
||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 416 TCAAGACTGGGAAGAACAGGTGGTTCTTTACTAAGCTCAGGTTCTGAAGAAGAACCTTTG 475
Query 479 AGATTTT-ATTTTATAACTATCTA-TTTT-GTTTAGTTCTAGAATCAATTTGGATTATTG 535
||||||| || | || ||||||| |||| ||||||||||||||| ||||||||| ||||
Sbjct 476 AGATTTTTATCT-AT--CTATCTACTTTTTGTTTAGTTCTAGAATGAATTTGGATCATTG 532
Query 536 TTTAAGACTATTTTGGTTTGGAATTGATTCTGGATTTTGTCTTTTACTTATGATCATTTG 595
|||||||| |||||||||||||||||||||||||||||||| |||||||| ||| ||||
Sbjct 533 TTTAAGACC-TTTTGGTTTGGAATTGATTCTGGATTTTGTCTCTTACTTATAATCTTTTG 591
Query 596 CGATATTGATGC 607
| ||||||||||
Sbjct 592 CTATATTGATGC 603
> AT4G15000.1 | Symbols: | Ribosomal L27e protein family | chr4:8571833-8572489
FORWARD LENGTH=657
Length=657
Score = 544 bits (294), Expect = 5e-154
Identities = 381/423 (90%), Gaps = 6/423 (1%)
Strand=Plus/Plus
Query 50 AAGAAACAATGGTGAAGTTTC-TGAAGCAGAACAAGGCCGTGATCCTCCTTCAAGGCCGT 108
||| ||||||||||||| ||| ||||||||||||||||||||||||| |||||||| |||
Sbjct 56 AAGCAACAATGGTGAAG-TTCTTGAAGCAGAACAAGGCCGTGATCCTTCTTCAAGGACGT 114
Query 109 TACGCCGGTAAGAAGGCAGTGATCATCAAATCCTTCGACGACGG-AACCAGTGACCGTCG 167
|||||||| ||||| || || ||||||||||||||||||||||| |||| |||| ||||
Sbjct 115 TACGCCGGAAAGAAAGCCGTCATCATCAAATCCTTCGACGACGGTAACC-GTGATCGTCC 173
Query 168 TTACGGACACTGCCTCGTCGCCGGACTGAAGAAGTATCCAAGCAAAGTCATCCGCAAAGA 227
||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 174 TTACGGACACTGCCTCGTCGCCGGACTCAAGAAGTACCCGAGCAAAGTCATCCGCAAAGA 233
Query 228 CTCAGCGAAGAAGACGGCGAAGAAGTCTCGAGTGAAATGTTTCATCAAACTCGTGAATTA 287
|||||| |||||||| || ||||| ||| | || || ||||||||||| || || |||||
Sbjct 234 CTCAGCTAAGAAGACAGCTAAGAAATCTAGGGTTAAGTGTTTCATCAAGCTTGTTAATTA 293
Query 288 CCAGCATCTGATGCCTACACGTTACACGCTCGATGTAGATCTGAAGGAAGTTGCGACTCT 347
|||||||||||||||||| |||||||| ||||| || ||||| |||||||| ||||||||
Sbjct 294 CCAGCATCTGATGCCTACTCGTTACACACTCGACGTGGATCTCAAGGAAGTGGCGACTCT 353
Query 348 TGATGCTCTTAAGAGTAAAGATAAGAAGG-TGACTGCTCTTAAGGAAGCTAAGGCTAAGC 406
|||||||||| ||||||| |||||||||| || |||||||||||||||||||||||||||
Sbjct 354 TGATGCTCTTCAGAGTAAGGATAAGAAGGTTG-CTGCTCTTAAGGAAGCTAAGGCTAAGC 412
Query 407 TTGAGGAGAGGTTCAAGACTGGCAAGAACAGGTGGTTCTTTACTAAGCTCAGGTTCTGAA 466
|||||||||||||||| || || |||||||| ||||||||||| ||||||||||||||||
Sbjct 413 TTGAGGAGAGGTTCAAAACCGGTAAGAACAGATGGTTCTTTACCAAGCTCAGGTTCTGAA 472
Query 467 GAA 469
|||
Sbjct 473 GAA 475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29236273554
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5