BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479738
Length=1025
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22260.2 | Symbols: | Cysteine proteinases superfamily prot... 1454 0.0
> AT3G22260.2 | Symbols: | Cysteine proteinases superfamily protein
| chr3:7870892-7873548 FORWARD LENGTH=1164
Length=1164
Score = 1454 bits (787), Expect = 0.0
Identities = 964/1043 (92%), Gaps = 37/1043 (4%)
Strand=Plus/Plus
Query 1 GACGAAGAAGAAAACATCTCTGAGA-C--C--AACGAAAGTATCCA-tttt-tttGTCTG 53
||||||||||||||||||||||||| | | |||||||||||||| |||| ||||||||
Sbjct 1 GACGAAGAAGAAAACATCTCTGAGACCGACGAAACGAAAGTATCCATTTTTATTTGTCTG 60
Query 54 C---AGT-AATCAATCGCATCGGaaaaaaaGAAACCTT-TTTAGCTTCTTTCGTCGCTGA 108
| ||| ||||||||||||||| ||||| |||||||| ||||||||||| ||| |||||
Sbjct 61 CAGTAGTAAATCAATCGCATCGG-AAAAAGGAAACCTTCTTTAGCTTCTTCCGTAGCTGA 119
Query 109 CG--tctctcta----tctcttaggcgtctctttcttttcttcaacgatttctctcttcc 162
|| |||||||| ||||||||| | |||||||||||||||||||||||||||| ||
Sbjct 120 CGTCTCTCTCTATCTGTCTCTTAGGTGCCTCTTTCTTTTCTTCAACGATTTCTCTCCCCC 179
Query 163 tcttGCTTTGGCTGATCGATTTGGGAAAAATTGAGCTTGCCAAGTCAAGCAACCCGATTT 222
||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 180 TCTTGCTTTAGCTGATCGATTT-CGAAAAATTGAGCTTGCCAAGTCAAGCAACCAGATTT 238
Query 223 TGTTGGTTGTATTTAGTATAGGGTCCAGATACAATGGATGAAAACAATAGGAATCCATTT 282
|||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||
Sbjct 239 TGTTGGTTGTATTTAGTATAGGATCCAAATACAATGGATGAAAACCATAGGAATCCATTT 298
Query 283 GCAAGTGCAAGTACAAGTGCAAGAGCAAGCGGCAGTACAAGTGCGAGCTCAAACTCGAGT 342
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 299 GCAAATGCAAGTACAAGTGCTAGAGCAAGCGGCAGTACAAGTGCGAGCTCAAACTCGAGT 358
Query 343 TTTAGTAGCAGTGTGGCGGATACAGATGATGATCAAACCATTGCACGTATATTAGCAGAA 402
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 359 TTTAGTAGCAGTGTGGCGGATACAGATGATGATCAGACCATTGCACGTATATTAGCTGAA 418
Query 403 GATGAGAGCTTAAGAAGAGAAGGCAAGCTTGGGAAGAGATTATCTCATTTGGATTCTATC 462
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GATGAGAGCTTGAGAAGAGAAGGCAAGCTTGGGAAGAGATTATCTCATTTGGATTCTATC 478
Query 463 CCACATACTCCTCGGGTTAACAGGGAAATACCCGATATAAATGATGCAACATTAGACCAT 522
||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 479 CCACACACTCCTCGGGTTAACAGGGAGATACCTGATATAAATGATGCAACATTAGACCAT 538
Query 523 GAGCTGCTCTCTGGGAGGTTGGCTACATATGGGTTAGCCGAATTACAAATGGAGGGAGAT 582
||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||
Sbjct 539 GAGCTGCTCTCTGGGAGGTTGGCCACATATGGTTTAGCGGAATTGCAAATGGAGGGAGAT 598
Query 583 GGAAATTGCCAGTTTCGAGCTTTAGCAGACCAGCTTTTCCGGAATGCAGATTACCATAAA 642
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 599 GGAAATTGCCAGTTTCGAGCTTTAGCAGACCAGCTTTTCCGCAATGCAGATTACCATAAA 658
Query 643 CATGTAAGGAAGCATGTTGTAAAGCAGTTAAAACAACAACGGAAGTTATACGAAGAATAT 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CATGTAAGGAAGCATGTTGTAAAGCAGTTAAAACAACAACGGAAGTTATACGAAGAATAT 718
Query 703 GTGCCAATGAAATACAGACACTACACCAGGAAGATGAAAAAACATGGTGAATGGGGAGAT 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GTGCCAATGAAATACAGACACTACACCAGGAAGATGAAAAAACATGGTGAATGGGGAGAT 778
Query 763 CATGTTACTCTTCAAGCTGCTGCAGATCGATTCGAAGCAAAGATCTGCTTAGTCACATCC 822
|||||||||||||||||||| || ||| |||||||||| |||||||||||||||||||||
Sbjct 779 CATGTTACTCTTCAAGCTGCAGCGGATAGATTCGAAGCCAAGATCTGCTTAGTCACATCC 838
Query 823 TTTCGGGATCAATCCTACATCGAGATTCTTCCTCATAACAAGAACCCTCTTAGAGAGGCT 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TTTCGGGATCAATCCTACATCGAGATTCTTCCTCATAACAAGAACCCTCTTAGAGAGGCT 898
Query 883 TGGCTTAGCTTCTGGAGTGAAGTGCATTACAATTCGCTATACGCTAACGGAGAT---G-T 938
||||| ||||||||||| ||||||||||||||||| |||||||||| |||| | | |
Sbjct 899 TGGCTCAGCTTCTGGAGCGAAGTGCATTACAATTCTTTATACGCTAATGGAGTTCTTGCT 958
Query 939 C--CCA-A----C-AA---GAAAACCCAGGAGGAAGCATTGGCTCTTCTAGGATTGCATT 987
| ||| | | || ||||||| || ||||||||||||||||||||| |||| |||
Sbjct 959 CTTCCAGATGTTCCAACAAGAAAACCGAGAAGGAAGCATTGGCTCTTCTAGTATTGGATT 1018
Query 988 TAG-GTTCATCTCCAAT-GTATA 1008
|| ||||||||||| | |||||
Sbjct 1019 TAAAGTTCATCTCCATTTGTATA 1041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50234147000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5