BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg479741

Length=472
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G22275.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   645    0.0  


> AT3G22275.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 22 Blast hits 
to 22 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:7878982-7879808 REVERSE 
LENGTH=657
Length=657

 Score =  645 bits (349),  Expect = 0.0
 Identities = 436/478 (91%), Gaps = 6/478 (1%)
 Strand=Plus/Plus

Query  1    GATTACTTTGACACGAAAATCTACCAAAGTAAGAATCTTGACCCAGAGAGAATCATGAAG  60
            ||||||||||| ||||||||| |||||||||||||| || ||| |||||| |||||||||
Sbjct  1    GATTACTTTGATACGAAAATCGACCAAAGTAAGAATATTTACCTAGAGAGGATCATGAAG  60

Query  61   GGTTGCAGCTTAGATCTCCACCTATCTCCATTGGCATCTACGCTTCAATCTTGTCGCCAA  120
            ||||||||||||||||| |||||||||||| |||| |||||||||||||||||||  |||
Sbjct  61   GGTTGCAGCTTAGATCTTCACCTATCTCCAATGGCCTCTACGCTTCAATCTTGTCATCAA  120

Query  121  GATTCTACGGTTAATGATCATTCTTCAGCCATAAGAGCTAAGGAAATTAATGCATTTCAT  180
            |||||||| |||||||||| ||||||| |||||||| |||||||||| ||||||||| ||
Sbjct  121  GATTCTACAGTTAATGATCGTTCTTCAACCATAAGATCTAAGGAAATCAATGCATTTTAT  180

Query  181  AGTGGGAGATTAAGTGAGTACGATCTCGTAGAGATCCAGATAAGGGCAATAATAGAGATG  240
            |||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct  181  AGTGGGAGATTAAGTGAGTACGATCTTGTAGAGATCCAGATGAGAGCAATAATAGAGATG  240

Query  241  GCGAGCAAGGAGCGTGAAGTAACGGCGTTAGAGTTAGCGCCGGCGAGACTGGAATCGCCG  300
            ||||||||||| ||||||||||| ||||||||||||| ||||| |||||||||||| |||
Sbjct  241  GCGAGCAAGGATCGTGAAGTAACAGCGTTAGAGTTAGTGCCGGTGAGACTGGAATCACCG  300

Query  301  TTAGGATGTTCGGTCAAGAGATCGGTGAAAAGGTTCTTGGAGAAGAGGAAGAAGAGAAGC  360
            |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  301  TTAGGATGTTCGGTGAAGAGATCTGTGAAAAGGTTCTTGGAGAAGAGGAAGAAGAGAAGC  360

Query  361  AAATATTTTACACTTACACCTAA---CACCTC---TACCTCCTCAACCTCCTCCTCCCCT  414
            |||| ||||||||||||||||||   ||||||   ||| |||||| | |||||||| | |
Sbjct  361  AAATCTTTTACACTTACACCTAATTACACCTCAAGTACTTCCTCATCATCCTCCTCTCTT  420

Query  415  CATAATTTCTAAACATAATTTTATTATGTTTTCCTTCTAATTATCAATCAAACCAAAA  472
            |||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||
Sbjct  421  CATAATTTCTAATCATAATTTTATTATGTTTTCCTTCTAGTTATCAATCAAAACAAAA  478



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22454663709


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5