BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479742
Length=1503
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22290.1 | Symbols: | Endoplasmic reticulum vesicle transpo... 2268 0.0
> AT3G22290.1 | Symbols: | Endoplasmic reticulum vesicle transporter
protein | chr3:7881561-7885579 FORWARD LENGTH=1597
Length=1597
Score = 2268 bits (1228), Expect = 0.0
Identities = 1395/1471 (95%), Gaps = 29/1471 (2%)
Strand=Plus/Plus
Query 43 TCCCGGAGATCTCTC-TT-TC-TCTTCTCCATCCTTGTTCTCTCGGCGCGCGCTTCATCC 99
||||||||||||||| || || |||||||||||||| |||||||||||||||||||||||
Sbjct 112 TCCCGGAGATCTCTCTTTCTCTTCTTCTCCATCCTTCTTCTCTCGGCGCGCGCTTCATCC 171
Query 100 TCATCACCTTCGAATCCGAGTCCTTTAAGGGAAGTTGCTAGGATGGGTGTGAAGCAGGCT 159
|| ||||||||||| || | ||||| ||||||| |||||||||||||||||||||||||
Sbjct 172 CCACCACCTTCGAATTCGTGCCCTTTGAGGGAAGCTGCTAGGATGGGTGTGAAGCAGGCT 231
Query 160 CTAAGGAGCATTGATGCGTTTCCAAGAGCAGAGGATCATTTGCTGCAGAAGACACAATCT 219
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 232 CTAAGGAGCATTGATGCGTTTCCAAGAGCAGAGGATCATTTGCTTCAGAAGACACAATCT 291
Query 220 GGTGCAGTTGTATCTATTGTTGGACTTCTTATAATGGCTACTTTGTTCTTACACGAGCTG 279
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 GGCGCTGTTGTATCTATTGTTGGACTTCTTATAATGGCTACTTTGTTCTTACACGAGCTG 351
Query 280 AGTTATTATCTTAACACACTTACTGTGCACCAGATGTCAGTGGACTTAAAGCGTGGAGAA 339
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 352 AGTTATTATCTTAACACACTTACAGTGCACCAGATGTCAGTGGACTTAAAGCGTGGAGAA 411
Query 340 ACTCTTCCAATTCATGTAAATATGACGTTTCCATCTTTGCCGTGTGATGTATTGAGTGTG 399
|||||||||||||||||||||||||||||||||||||| || ||||||||| |||| ||
Sbjct 412 ACTCTTCCAATTCATGTAAATATGACGTTTCCATCTTTACCTTGTGATGTACTGAGCGTA 471
Query 400 GATGCTATCGACATGTCGGGGAAGCATGAAGTGGATCTTGATACAAACATTTGGAAGCTC 459
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 GATGCTATCGACATGTCAGGGAAGCATGAAGTGGATCTTGATACAAACATTTGGAAGCTC 531
Query 460 CGTCTCAACAGTCATGGTCATATCATTGGCACAGAATATATATCTGATCTTGTTGAAAAG 519
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 532 CGTCTCAACAGTCATGGTCATATCATAGGCACAGAATATATATCTGATCTTGTTGAAAAG 591
Query 520 GGGCATGAGCATGGCCACTCATCTCACAAGCATGATGGCAAAGAAGAACACAAGAATGAG 579
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 592 GGGCATGAGCATGGCCACTCACCTCACAAGCATGATGGCAAAGAAGAACACAAGAATGAG 651
Query 580 ACTGAAACCGAAGCATTGAATATTCTTGGCTTTGATCAAGCTGCTGAGACTATGATTAAA 639
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 652 ACTGAAACCGAAGCATTGAATATTCTTGGCTTTGACCAAGCTGCTGAGACTATGATTAAA 711
Query 640 AAGGTGAAGCAAGCATTGGCAGATGGAGAAGGATGTCGGGTTTATGGTGTCCTAGATGTA 699
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 AAAGTGAAGCAAGCATTGGCAGATGGAGAAGGATGTCGGGTTTATGGTGTCCTAGATGTA 771
Query 700 CAACGGGTTGCTGGAAACTTCCATATTTCAGTTCACGGGCTGAACATCTATGTTGCTCAG 759
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 772 CAACGGGTTGCCGGAAACTTCCATATTTCAGTTCATGGGCTGAACATCTATGTTGCTCAG 831
Query 760 ATGATATTTGGCGGGTCGAAAAACGTAAACGTGAGCCATATGATTCATGATCTATCCTTT 819
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 832 ATGATATTTGGCGGGTCCAAAAACGTAAACGTGAGCCATATGATTCACGATCTATCATTT 891
Query 820 GGGCCGAAATACCCTGGAATTCACAACCCACTTGATGACACCAACCGGATACTGCATGAC 879
|||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 892 GGGCCGAAATACCCCGGAATTCACAACCCACTTGATGACACCAACCGAATACTCCATGAC 951
Query 880 ACCAGTGGAACATTCAAATACTATATTAAGATTGTTCCCACAGAATATAGATATCTTTCA 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 ACCAGTGGAACATTCAAATACTATATTAAGATTGTTCCCACAGAATATAGATATCTTTCA 1011
Query 940 AAAGACGTACTGTCAACAAATCAGTACTCTGTAACCGAATATTACACGCCAATGACTGAA 999
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1012 AAAGACGTACTGTCAACAAATCAGTACTCTGTAACTGAATATTTCACGCCAATGACTGAA 1071
Query 1000 TTTGACCGGACATGGCCAGCTGTCTACTTCTTATATGATCTTTCACCTATCACTGTGACC 1059
|| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1072 TTCGACCGTACATGGCCAGCTGTTTACTTCTTATATGATCTTTCACCTATCACTGTGACC 1131
Query 1060 ATCAAGGAAGAACGCCGTAGTTTTCTCCACTTAATCACTCGGCTTTGCGCTGTATTAGGT 1119
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1132 ATCAAGGAAGAACGCCGTAGTTTTCTCCACTTAATCACTCGTCTTTGCGCTGTATTAGGC 1191
Query 1120 GGTACCTTTGCTTTGACAGGAATGTTAGATCGTTGGATGTTCCGCTTTATTGAATCTTTC 1179
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 GGTACATTTGCTTTGACAGGAATGTTAGATCGTTGGATGTTCCGCTTTATTGAATCTTTC 1251
Query 1180 AACAAGAAGGCGAGTACCAGAGCATAAACTAGTTGAAGAAACAGAGACAAAACAAAGAAG 1239
||||||||| ||||||| ||||| |||||||| |||| | |||||||||||||| || |
Sbjct 1252 AACAAGAAGCCGAGTACTAGAGCGTAAACTAGCTGAA-A--CAGAGACAAAACAATGA-G 1307
Query 1240 aaa-aaaaaaa-C-AAAGGAAGGAAGAAGAATCTCTCAAACTCC-AAAACTTGTATCTGC 1295
||| ||||||| | |||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1308 AAACAAAAAAAACCAAAGGAAGGAAGAAGAATCTCTCAAA-TCCCAAAACTTGTATCTGC 1366
Query 1296 CTTCTTGAGACAACAAC-CC-ACCAGAGATTCCAGGATTGATGATTACACATTCATTACT 1353
|||||| |||||||||| || |||||||||||||||||||||||||||| || | ||
Sbjct 1367 CTTCTTCAGACAACAACACCCACCAGAGATTCCAGGATTGATGATTACA--TT-A---CT 1420
Query 1354 CAGAAACTCTAGAATCCATGGATATAGTGTTTTTGCATCTTCTCAGTCTCTCTTATGTAT 1413
|||||||||||||||||||||||||||| ||||| | || ||||||||||||||||
Sbjct 1421 CAGAAACTCTAGAATCCATGGATATAGT-TTTTT---T-TTG--AGTCTCTCTTATGTAT 1473
Query 1414 TTACTCTGATTATCTCTGGTTAAACTAGTAGAGTTAATTTGTAATTTT-ATTCACCTTGC 1472
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1474 T-ACTCTGATTATCTCTGGTTAAACTAGTAGAGTTAATTTGTAATTTTTATTCACCTTGC 1532
Query 1473 ATCATGGGATTTTAACATTTTTGCATCTTTT 1503
|| |||||||||||||||||||||||||||
Sbjct 1533 TTCCTGGGATTTTAACATTTTTGCATCTTTT 1563
Score = 73.1 bits (39), Expect = 7e-12
Identities = 41/42 (98%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 1 TAAATTGAGGGTGCAATTAATAAATAAGGAGAGACGGAAAAA 42
||||| ||||||||||||||||||||||||||||||||||||
Sbjct 18 TAAATGGAGGGTGCAATTAATAAATAAGGAGAGACGGAAAAA 59
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74146204965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5