BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479743
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22300.1 | Symbols: RPS10 | ribosomal protein S10 | chr3:788... 1378 0.0
> AT3G22300.1 | Symbols: RPS10 | ribosomal protein S10 | chr3:7885668-7886820
FORWARD LENGTH=1002
Length=1002
Score = 1378 bits (746), Expect = 0.0
Identities = 883/947 (93%), Gaps = 17/947 (2%)
Strand=Plus/Plus
Query 1 AATTTGGGGTTTTTCAGATTTCCTTGTTCAATCTCTCGTCGTCATTTCTCCGTCTCACCG 60
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1 AATTTGGGGTTTTTCAGATTTCC---TTCAATCTCTCGTCGTCATTTCTTCGTCTCACCG 57
Query 61 TTGAATCTGAAAATGATCACCGGAGTATTGCGCCGATCTTCACTACCGTCGAGGCAGACT 120
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 58 TTGAATCTGAAAATGATCGCCGGAGTATTGCGCCGATCTTCACTCCCGTCGAGGCAGACT 117
Query 121 CTCTCCGCCGCGTTAACCTCCTTTGATTCATGTCTTTCGCACCATTTCACTTCAGCCACT 180
||||||||||||||| ||||||| |||| ||| |||||||| || ||||| |||||||
Sbjct 118 CTCTCCGCCGCGTTAGCCTCCTTCAATTCGTGTATTTCGCACAATCTCACTCCAGCCACC 177
Query 181 ACCGGAGTC-TCCGTCAGCTCTCGATTCACTCTCTCGTCGTCTCCGAACTCGTTTGGTAT 239
||||||| | |||||||||||||||||||||||| |||||||||| ||||||||||| ||
Sbjct 178 ACCGGAG-CTTCCGTCAGCTCTCGATTCACTCTCGCGTCGTCTCCTAACTCGTTTGGCAT 236
Query 240 TGGAGCGAGAGAA-TTCCACATTAGATCTGAGCCGTCGATGATTGTTCCTGCAGGAATCG 298
||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 237 CAGAGCGAG-GAACATCCACATTAGATCTGAGCCGTCGATGATTGTTCCCGCAGGAATCG 295
Query 299 CGTCACAAGGTTACGCCACTGTCACAAGGGATCGCAAAAACGAGATTAAGAAAGCTAAGC 358
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 296 CGTCACAAGGTTACGCCACTGTCACAAAGGATCGCAAAAACGAGATTAAGAAAGCTAAGA 355
Query 359 TTAAAATTTCTCCAGACAATGTCAGACCATTGAGTAGGAAGGAGATCGCTCTACAGAAAG 418
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 356 TTAAAATTTCTCCAGACAATGTCAGACCATTGAGTAGGAAGGAGATCGCTCTCCAGAAAG 415
Query 419 AGGCAGCAGAAGAAAGCACATCAAAGATAAAAGGAACTAAGATTTGCATAGCGATTCGGT 478
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 416 AGGCAGCAGAAGAAAGCACATCAAAGATAAAAGGAACAAAGATTTGTATAGCGATTCGGT 475
Query 479 CTTTCGATAACCCGGAAAAGCAAGCTTGGTGTCTTCCTCCTCACACTCGTAAAGTTGCAA 538
|||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 476 CTTTTGTTAACCCGGAAAAGCAAGCTTGGTGTCTTCCTCCTCACACTCGTAAAGTCGCAA 535
Query 539 TGCCCGATACACGAACTCTGTACACGGTGCTACGATCGCCTCACGTCGATAAGAAGTCTA 598
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 536 TGCCCGATACACGAACTCTGTACACGGTGCTAAGATCGCCTCACGTCGATAAGAAGTCTA 595
Query 599 GAGAACAGTTTGAGATGCGGTTCAAGAAACGTTTTCTTGTCATCAAAGCTCAGAGTCATG 658
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 596 GAGAACAGTTTGAGATGAGGTTCAAGAAACGGTTTCTTGTCATCAAAGCTCAGAGTCATG 655
Query 659 AATTGAGCAAAAAGCTGTTTTGGTTAAAACGTTATCGTATTCTTGGAGCTCAATATGAAC 718
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 AGTTGAGCAAGAAGCTGTTTTGGTTAAAACGTTATCGTATTCTTGGAGCTCAATATGAAC 715
Query 719 TCCAATTCCATTGCAAGACTCGTTTGGACATGACTCAAGTGTTAGGCAACATCAATGGCT 778
|||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 716 TCCAGTTCCATTGCAAGACCCGTTTGGATATGACTCAAGTGTTAGGCAACATCAATGGCT 775
Query 779 CCAGCA--A-TACTCAATGAGTTGGCTAAAGATATCATTTTGTAGAAGTTTCAAGACCCA 835
||| || | | || | |||| |||||||||| |||||||||||||||||||||||||||
Sbjct 776 CCACCACCAATGCTTACTGAGATGGCTAAAGACATCATTTTGTAGAAGTTTCAAGACCCA 835
Query 836 ACCGGGTACTCCCCGCAATAATTTTGAACCTTACGGATCCATGAACTCACTCAGCCTTTG 895
|||||||||| |||||||||| |||||||||||||||||||| || |||| ||||
Sbjct 836 ACCGGGTACTAT--GCAATAATTTCGAACCTTACGGATCCATGAA---AC-CAGC-TTTG 888
Query 896 CTTCACATCAGATCAACTAGCTCTTTTCTTGCTTAGTATAAACATGT 942
|||||||||||||||| ||| | ||||||||||||||||||||||||
Sbjct 889 CTTCACATCAGATCAAGTAGTTATTTTCTTGCTTAGTATAAACATGT 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46064712799
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5