BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479744
Length=2157
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA... 3210 0.0
AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial RN... 1613 0.0
> AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA
helicase 1 | chr3:7887286-7890019 FORWARD LENGTH=2142
Length=2142
Score = 3210 bits (1738), Expect = 0.0
Identities = 2031/2167 (94%), Gaps = 41/2167 (2%)
Strand=Plus/Plus
Query 1 AAACCCTTTTGCCGTCTCTCTAAAACCCTAATTCTCATTTTTGGGGTTTCACATTTCATC 60
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 AAACCCTTTTGCCGTCTCCCTAAAACCCTAATTCTCATTTCTGGGGTTTCACATTTCATC 60
Query 61 TTCATCGCCAAAACCCATCACTCTCTATCAAATCTGAAAATGATTAGCACAGTACTCCAC 120
|||| ||| || ||||||| |||| | ||||||||||||||||||||||||||| | |
Sbjct 61 TTCA---CCAGAATCCATCACACTCTCTGAAATCTGAAAATGATTAGCACAGTACTTCGC 117
Query 121 CGATCTTTCCTTGGTACGTCAAGGCGTACTCTCGCCGCTTCAGTGACCTCCATTAACGCG 180
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 118 CGATCTATCCTTGGTACGTCAAGGCGTACTCTCGCCGCTTCGGTGACCTCCATTAACGCA 177
Query 181 GCTCTATTTCATAACCTTGCTCCAGCCGCCGCCGCCACTGCTACAGTCTCCGATCTAGCA 240
|||||||||||||||||||||||| ||||||| | | ||||||||||||||||||
Sbjct 178 GCTCTATTTCATAACCTTGCTCCA---GCCGCCG---C--C-ACAGTCTCCGATCTAGCA 228
Query 241 AATGGAGCTACCAATGTTAAGTCTCTCCC-TCTGAATTCGAACCCGTTTGGTGTTAAAGG 299
||||||||||| ||||| ||||||||||| || |||||||| ||| |||||||||||||
Sbjct 229 AATGGAGCTACTAATGTCAAGTCTCTCCCTTC-GAATTCGAGCCCTTTTGGTGTTAAAGT 287
Query 300 GAGAGACTTTCATGTTAAATCTGTACCGTCGGAGTTTAGATCGTCGATTGTTTCACCTGC 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 288 GAGAGACTTTCATGTTAAATCTGTACCGTCGGAGTTTAGATCGTCGATTGTTTCTTCTGC 347
Query 360 GGGGTTCGCGGCTCAAGAGTATGCTCCTTCGTATGAGAACAGCGATGGAGGGATTGGTGA 419
||| |||||||||||||||||||||||||| |||||| | | ||||||||||||||| ||
Sbjct 348 GGGATTCGCGGCTCAAGAGTATGCTCCTTCTTATGAG-A-A-CGATGGAGGGATTGGAGA 404
Query 420 TTCGGAGAGTGTTGGTAGTAGCAGTGGTGGTGATGGGCTTGCGATATCTGAGCTTGGAAT 479
|||||||||||||||||| ||| ||||||||||||||||||||||| |||| ||||| ||
Sbjct 405 TTCGGAGAGTGTTGGTAGCAGCGGTGGTGGTGATGGGCTTGCGATAGCTGATCTTGGTAT 464
Query 480 ATCTCCGGAGATTGTTAAAGCTTTGAAGGGTAGGGGTATTGAGAAACTCTTTCCTATTCA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 ATCTCCGGAGATTGTTAAAGCTTTGAAGGGTAGGGGTATTGAGAAACTCTTTCCTATTCA 524
Query 540 GAAAGCTGTGTTGGAGCCAGCGATGCAAGGTCGTGATATGATTGGTCGTGCAAGGACTGG 599
||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||
Sbjct 525 GAAAGCTGTGTTGGAGCCAGCGATGGAGGGTCGTGATATGATTGGCCGTGCAAGGACTGG 584
Query 600 AACAGGAAAGACTCTTGCTTTTGGGATTCCTGTCATTGACAAAATCATCAAATTCAACGC 659
||| |||||||| |||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 585 AACGGGAAAGACACTTGCTTTTGGGATTCCTATTATTGACAAAATCATCAAATTCAACGC 644
Query 660 TAAACATGGACGTGGGAAGAATCCTCAGTGCTTGGTTTTGGCACCGACGAGGGAACTTGC 719
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 645 TAAACATGGTCGTGGGAAGAATCCTCAGTGCTTGGTTTTGGCACCGACGAGGGAGCTTGC 704
Query 720 TCGTCAGGTTGAGAAGGAGTTTAGGGAATCTGCTCCAAGTTTGGATACTATTTGTCTCTA 779
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 705 TCGTCAGGTTGAGAAAGAGTTCAGGGAATCTGCTCCAAGTTTGGATACTATTTGTCTCTA 764
Query 780 TGGAGGTACACCGATTGGGCAGCAAATGAGGGAGCTTAACTATGGTATTGATGTGGCGGT 839
|||||||||||| || ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 765 TGGAGGTACACCAATCGGGCAACAAATGAGGGAGCTGAACTATGGTATTGATGTGGCGGT 824
Query 840 TGGAACTCCAGGTCGTATCATTGATCTTATGAAAAGAGGAGCTTTGAATCTATCAGAGGT 899
||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 825 TGGAACTCCTGGTCGTATCATTGATCTGATGAAAAGGGGAGCTTTGAATCTATCAGAGGT 884
Query 900 TCAGTTTGTGGTTCTGGATGAAGCTGATCAGATGCTTCAAGTTGGATTTGCGGAAGATGT 959
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 TCAGTTTGTGGTTCTTGATGAAGCTGATCAGATGCTTCAAGTTGGATTTGCGGAAGATGT 944
Query 960 CGAAATAATATTGCAGAAGTTGCCAGAGAAACGTCAGAGTATGATGTTTTCTGCAACAAT 1019
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 945 TGAAATAATATTGCAGAAGTTGCCAGCGAAGCGTCAGAGTATGATGTTTTCTGCAACAAT 1004
Query 1020 GCCGAGTTGGATCAGATCTCTTACCAAGAAGTACCTGAACAATCCTTTGACAATTGATCT 1079
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1005 GCCAAGTTGGATCAGATCTCTCACCAAGAAGTACCTGAACAATCCTTTGACAATTGATCT 1064
Query 1080 TGTTGGAGATTCGGATCAGAAACTTGCAGATGGGATTACTATGTATTCTATCGCTGCAGA 1139
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 TGTTGGAGATTCAGATCAGAAACTTGCAGATGGGATTACTATGTATTCTATCGCTGCAGA 1124
Query 1140 TTCTTATGGAAGAGCATCCATCATTGGTCCTCTTGTAAACGAGCATGGCAAAGGAGGAAA 1199
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1125 TTCTTATGGAAGAGCATCCATCATTGGTCCTCTTGTAAAGGAACATGGCAAAGGAGGAAA 1184
Query 1200 GTGTATTGTCTTTACCCAAACAAAACGGGATGCGGATCGCCTTGCATTTGGATTGGCGAA 1259
|| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 1185 ATGCATTGTCTTTACCCAAACAAAACGTGATGCAGATCGCCTTGCATTTGGATTGGCAAA 1244
Query 1260 AAGCT-TCAAATGTGAAGCTTTACACGGTGACATATCCCAAGCTCAGAGAGAAAGAACAC 1318
||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1245 AAGCTAT-AAATGTGAAGCTTTACACGGTGACATATCTCAAGCTCAGAGAGAAAGAACAC 1303
Query 1319 TTGCTGGCTTCAGGGATGGGAATTTCAATATTCTTGTTGCAACTGATGTTGCTGCCCGTG 1378
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1304 TTGCTGGTTTCAGGGATGGGAATTTCAGTATTCTTGTTGCAACTGATGTTGCTGCCCGTG 1363
Query 1379 GACTTGATGTACCTAATGTCGATTTGGTAATTCATTATGAGCTTCCTAATAACACTGAGA 1438
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1364 GACTTGATGTACCTAATGTCGATTTAGTAATTCATTATGAGCTTCCTAATAACACGGAGA 1423
Query 1439 CGTTTGTTCACCGAACGGGGCGAACAGGTCGTGCTGGAAAGAAAGGAAGCGCGATCCTCA 1498
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1424 CGTTTGTTCACCGAACGGGGCGAACTGGTCGTGCTGGAAAGAAAGGAAGCGCGATTCTCA 1483
Query 1499 TCCACGGTCAAGAGCAATCTAGGGCTGTTAAAATGATTGAGAAAGAAGTTGGAAGCAGAT 1558
||||||||||||| ||| | ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1484 TCCACGGTCAAGATCAAACCAGGGCTGTTAAAATGATTGAGAAAGAAGTCGGAAGCAGAT 1543
Query 1559 TCAATGAGCTCCCTAGCATTGCGGTGGAACGTGGAAGCGCAAGCATGTTTGAAGGAGTAG 1618
|||||||||| ||||||||||| |||||| | ||||||||||||||||||||||||||||
Sbjct 1544 TCAATGAGCTGCCTAGCATTGCTGTGGAAAGAGGAAGCGCAAGCATGTTTGAAGGAGTAG 1603
Query 1619 GTGCTAGATCTGGTGGGTCCTTTGGAGGAGGTCGTTCAGGCGGTGGT---TATGGTAGTT 1675
||||||||||||||||||| || ||||||||||| |||||||||||| ||||||||||
Sbjct 1604 GTGCTAGATCTGGTGGGTCGTTCGGAGGAGGTCGATCAGGCGGTGGTGGGTATGGTAGTT 1663
Query 1676 ACGGTAGCAGCAGTGGCCGTTcaggtggtggtggtggtagttatggaggatatggtggca 1735
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1664 ACGGTAGCAGCAGTGGCCGTTCA------GGTGGTGGTAGTTATGGAGGTTATGGTGGCA 1717
Query 1736 gcagtggccgttcaggtggtggtggtggtAGTTATGGAGGTTCAGGGGGATCAAGCAGCC 1795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1718 GCAGTGGCCGTTCAGGTGGTGGTGGTGGTAGTTATGGAGGTTCAGGGGGATCAAGCAGCC 1777
Query 1796 GTTACTCTGGTGGTTCAGACCGCTCATCTGGTTTCGGAGGCTTTGGTTCAGGCGGTTC-- 1853
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1778 GTTACTCTGGTGGTTCAGACCGCTCATCTGGTTTCGGAAGCTTTGGTTCAGGCGGTTCTT 1837
Query 1854 -AG-ACCGTTCTTCAGGAGGATTTGGTTCTTCTCAGTCAAGTGGAAGGAGCAGCTTTGGT 1911
|| | | | || || | |||||||||||||||||||||||||||||||||||
Sbjct 1838 CAGGAG-GAT-TT--GGTTCAGACCGTTCTTCTCAGTCAAGTGGAAGGAGCAGCTTTGGT 1893
Query 1912 GGGTTTGGATCAAACGATGGTAAAAGATCTTACTGAGAGAAGTGTTGGGTGGGTTTAGAC 1971
||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 1894 GGGTTTGGATCAAACGATGGTAAAAGATCTTACTGAGAGAAGTGTTGTGTTGGTTTTGAC 1953
Query 1972 CCGACCC-GACAATAATGGAGTTGACTTAGGAGAGAACTCGGTATCTCTGAGTTGAGTAG 2030
||||| | | |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1954 CCGACTCAG-CAATAATGGAGTTGACTTAGGAGAGAACTCGGTATCTC-GAGTTGAGTAG 2011
Query 2031 TTTTAACAAGGAGTCGAGCTATATATAAAATCTGTAGCTGCTTCTTGTCTCATAAACAAA 2090
||| | ||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||
Sbjct 2012 TTT-A-CAAGGAGTCGAGCTATATATAAATTCTGTAGCTACTTCTTGTCTCATAAACCAA 2069
Query 2091 CATAAGTTATATCATTATTTCATATCCTCTAATTCATTTTTATTTCTCAATTTGAGTGAA 2150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2070 CATAAGTTATATCATTATTTCATATCCTCTAATTCATTTTTATTTCTCAATTTGAGTGAA 2129
Query 2151 ATGTGTT 2157
|||||||
Sbjct 2130 ATGTGTT 2136
> AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial
RNA helicase 2 | chr3:7892537-7895366 FORWARD LENGTH=2176
Length=2176
Score = 1613 bits (873), Expect = 0.0
Identities = 1099/1210 (91%), Gaps = 8/1210 (1%)
Strand=Plus/Plus
Query 444 TGGTGGTGATGGGCTTGCGATATCTGAGCTTGGAATATCTCCGGAGATTGTTAAAGCTTT 503
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 401 TGGTGGTGATGGGCTTGCGATATCTGAGCTTGGGATATCTCCGGAGATTGTTAAAGCTTT 460
Query 504 GAAG-GGTAGGGGTATTGAGAAACTCTTTCCTATTCAGAAAGCTGTGTTGGAGCCAGCGA 562
| || ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 461 G-AGTAGTAAGGGTATTGAGAAACTCTTTCCTATTCAGAAAGCTGTGCTGGAGCCAGCGA 519
Query 563 TGCAAGGTCGTGATATGATTGGTCGTGCAAGGACTGGAACAGGAAAGACTCTTGCTTTTG 622
|| | ||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 520 TGGAGGGTCGAGATATGATTGGTCGTGCTAGGACTGGAACGGGAAAGACACTTGCTTTTG 579
Query 623 GGATTCCTGTCATTGACAAAATCATCAAATTCAACGCTAAACATGGACGTGGGAAGAATC 682
|||||||| ||||||||||||||||||||| |||||||||||||||||| |||| |||||
Sbjct 580 GGATTCCTATCATTGACAAAATCATCAAATACAACGCTAAACATGGACGAGGGAGGAATC 639
Query 683 CTCAGTGCTTGGTTTTGGCACCGACGAGGGAACTTGCTCGTCAGGTTGAGAAGGAGTTTA 742
| | || ||||||||||||||||| || || |||||||| |||||||||||||||||||
Sbjct 640 CGCTTTGTTTGGTTTTGGCACCGACAAGAGAGCTTGCTCGCCAGGTTGAGAAGGAGTTTA 699
Query 743 GGGAATCTGCTCCAAGTTTGGATACTATTTGTCTCTATGGAGGTACACCGATTGGGCAGC 802
|||| |||||||| || ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 700 GGGAGTCTGCTCCGAGCTTGGATACTATTTGTCTTTATGGAGGTACACCGATTGGACAGC 759
Query 803 AAATGAGGGAGCTTAACTATGGTATTGATGTGGCGGTTGGAACTCCAGGTCGTATCATTG 862
|||||||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 760 AAATGAGGCAGCTTGACTATGGTGTTGATGTGGCGGTTGGAACTCCAGGTCGTGTCATTG 819
Query 863 ATCTTATGAAAAGAGGAGCTTTGAATCTATCAGAGGTTCAGTTTGTGGTTCTGGATGAAG 922
|||| ||||| |||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 820 ATCTGATGAAGAGAGGAGCTTTGAATCTATCGGAAGTTCAGTTTGTGGTTCTGGATGAAG 879
Query 923 CTGATCAGATGCTTCAAGTTGGATTTGCGGAAGATGTCGAAATAATATTGCAGAAGTTGC 982
|||||||||||||||||||||||||||| || ||||| |||||||||||| | |||||||
Sbjct 880 CTGATCAGATGCTTCAAGTTGGATTTGCTGAGGATGTTGAAATAATATTGGAAAAGTTGC 939
Query 983 CAGAGAAACGTCAGAGTATGATGTTTTCTGCAACAATGCCGAGTTGGATCAGATCTCTTA 1042
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 940 CTGAGAAACGTCAGAGTATGATGTTTTCTGCAACAATGCCGAGTTGGATCAGATCTCTCA 999
Query 1043 CCAAGAAGTACCTGAACAATCCTTTGACAATTGATCTTGTTGGAGATTCGGATCAGAAAC 1102
| |||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1000 CTAAGAAGTACCTGAATAATCCTTTGACAGTTGATCTTGTTGGAGATTCTGATCAGAAAC 1059
Query 1103 TTGCAGATGGGATTACTATGTATTCTATCGCT-GCAGATTCTTATGGAAGAGCATCCATC 1161
| |||||||| ||||| | ||||||||| | ||||||||||||||||||||||||||
Sbjct 1060 TAGCAGATGGAATTACGACATATTCTATCA-TAGCAGATTCTTATGGAAGAGCATCCATT 1118
Query 1162 ATTGGTCCTCTTGTAAACG-AGCATGGCAAAGGAGGAAAGTGTATTGTCTTTACCCAAAC 1220
|||||||||||||||| || |||||| |||||||||||| || ||||| ||||| |||||
Sbjct 1119 ATTGGTCCTCTTGTAA-CGGAGCATGCCAAAGGAGGAAAATGCATTGTTTTTACACAAAC 1177
Query 1221 AAAACGGGATGCGGATCGCCTTGCATTTGGATTGGCGAAAAGCTTCAAATGTGAAGCTTT 1280
|||||| ||||| ||||||||| ||| || |||||| | |||||||||||||||||||||
Sbjct 1178 AAAACGAGATGCTGATCGCCTTTCATATGCATTGGCTAGAAGCTTCAAATGTGAAGCTTT 1237
Query 1281 ACACGGTGACATATCCCA-AGCTCAGAGAGAAAGAACACTTGCTGGCTTCAGGGATGGGA 1339
||||||||| |||||||| || |||||| |||||||| |||||||| ||| | ||||||
Sbjct 1238 ACACGGTGATATATCCCAGAG-TCAGAGGGAAAGAACGCTTGCTGGTTTCCGAGATGGGC 1296
Query 1340 ATTTCAATATTCTTGTTGCAACTGATGTTGCTGCCCGTGGACTTGATGTACCTAATGTCG 1399
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 ATTTCAATATTCTTGTTGCGACTGATGTTGCTGCCCGTGGACTTGATGTACCTAATGTCG 1356
Query 1400 ATTTGGTAATTCATTATGAGCTTCCTAATAACACTGAGACGTTTGTTCACCGAACGGGGC 1459
||||| | ||||| |||||||||||||||||||| ||||| ||||| || ||||| ||||
Sbjct 1357 ATTTGATCATTCACTATGAGCTTCCTAATAACACGGAGACATTTGTCCATCGAACCGGGC 1416
Query 1460 GAACAGGTCGTGCTGGAAAGAAAGGAAGCGCGATCCTCATCCACGGTCAAGAGCAATCTA 1519
|||| ||||| ||||||||||||||||| || || || ||| || ||||||| ||||| |
Sbjct 1417 GAACGGGTCGGGCTGGAAAGAAAGGAAGTGCTATTCTGATCTACAGTCAAGATCAATCCA 1476
Query 1520 GGGCTGTTAAAATGATTGAGAAAGAAGTTGGAAGCAGATTCAATGAGCTCCCTAGCATTG 1579
||||||| ||||| ||||||| ||||||||| ||| |||||| |||||||||||||||||
Sbjct 1477 GGGCTGTAAAAATAATTGAGAGAGAAGTTGGGAGCCGATTCACTGAGCTCCCTAGCATTG 1536
Query 1580 CGGTGGAACGTGGAAGCGCAAGCATGTTTGAAGGAGTAGGTGCTAGATCTGGTGGGTCCT 1639
| ||||||||||||||||||||||||||||||||| ||||| || |||| ||||| ||||
Sbjct 1537 CTGTGGAACGTGGAAGCGCAAGCATGTTTGAAGGAATAGGTTCTCGATCCGGTGGTTCCT 1596
Query 1640 TTGGAGGAGG 1649
||||||||||
Sbjct 1597 TTGGAGGAGG 1606
Score = 128 bits (69), Expect = 2e-28
Identities = 77/81 (95%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 1877 GTTCTTCTCAGTCAAGTGGAAGGAGCAGCTTTGGTGGGTTTGGATCAAACGATGGTAAAA 1936
|||||||||||||| | |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1885 GTTCTTCTCAGTCAGGCGGAAGGAGCAGCTTTGGTGGGTTTGGATCAAATGATGGGAAAA 1944
Query 1937 GATCTTACTGAGAGAAGTGTT 1957
|||||||||||||||||||||
Sbjct 1945 GATCTTACTGAGAGAAGTGTT 1965
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106977361395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5