BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479745
Length=934
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22320.1 | Symbols: ATRPABC24.3, RPB5A, NRPB5, NRPD5 | Eukar... 1432 0.0
> AT3G22320.1 | Symbols: ATRPABC24.3, RPB5A, NRPB5, NRPD5 | Eukaryotic
rpb5 RNA polymerase subunit family protein | chr3:7890864-7892347
REVERSE LENGTH=942
Length=942
Score = 1432 bits (775), Expect = 0.0
Identities = 893/947 (94%), Gaps = 19/947 (2%)
Strand=Plus/Plus
Query 1 AGAATCGAGAAAAGGGTTCGGAGGT------A-AAAGCTTGAAACGCCGcttcttcttct 53
||||| ||||||||||||| ||||| | |||||||||||||||||||||||||||
Sbjct 1 AGAATTGAGAAAAGGGTTC-GAGGTAAAAGGAGAAAGCTTGAAACGCCGCTTCTTCTTCT 59
Query 54 tcttcgtcttc-ctc-tatctctctgtaaatctcttcttcaaccatctctGTGGATTTGT 111
||||| || | || | |||||||||||||| ||||||||| |||||||||||||||||
Sbjct 60 TCTTCTTCCACTGTCGT-TCTCTCTGTAAATCGCTTCTTCAATCATCTCTGTGGATTTGT 118
Query 112 CTCTATTCAATTAA-TTGGTGAAGAAGATGTTGACGGAAGAAGAAATCAAAAGACTGTAC 170
|||||||| | ||| |||||||||||||||||||||||||| || |||||||| |||||
Sbjct 119 CTCTATTC-A-TAACTTGGTGAAGAAGATGTTGACGGAAGAGGAGCTCAAAAGATTGTAC 176
Query 171 AGAATCCAGAAGACGTTGATGCAGATGTTAAAGGATCGTGGCTATTTTATAGCGGATTCT 230
||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||
Sbjct 177 AGAATCCAGAAGACGTTGATGCAGATGTTAAGGGATCGTGGATATTTTATCGCGGATTCT 236
Query 231 GAACTTACGATGACGAAACAACAGTTTATTAGGAAACATGGTGATAACATGAAAAGAGAG 290
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GAACTTACGATGACTAAACAACAGTTTATTAGGAAACATGGTGATAACATGAAAAGAGAG 296
Query 291 GATTTTGTTACTCTTAAGGTTAAGAGAAATGATAACAGTGATCAGCTCTATATATTCTTC 350
||| ||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||
Sbjct 297 GATCTTGTTACTCTTAAGGCTAAGCGAAATGATAATAGTGATCAGCTCTATATATTCTTC 356
Query 351 CCTGATGAGGCGAAAGTTGGAGTGAAGACGATGAAGATGTACACGAACAGGATGAAATCA 410
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 357 CCTGATGAGGCGAAAGTTGGTGTGAAGACGATGAAAATGTACACGAACAGGATGAAATCA 416
Query 411 GAGAATGT-TTACAGAGCTATTTTGGTTGTGCAACAGAACTTGACCCCTTTTGCTCGAAC 469
|||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 417 GAGAATGTGTT-CAGAGCTATTTTGGTTGTGCAACAGAACTTGACCCCGTTTGCTCGAAC 475
Query 470 TTGCATTAGTGAGATCTCTTCAAAGTTTCATCTGGAAGTTTTCCAGGAGGCGGAAATGCT 529
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 476 TTGCATTAGTGAGATCTCTTCTAAGTTTCATCTGGAAGTTTTCCAGGAGGCGGAAATGCT 535
Query 530 AGTGAACATTAAAGAACATGTTCTTGTTCCTGAGCATCAAGTTCTTACCACTGAAGAGAA 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 AGTGAACATTAAAGAACATGTTCTTGTTCCTGAGCATCAAGTTCTTACCACTGAAGAGAA 595
Query 590 GAAAACTTTACTGGAGAGATACACAGTGAAGGAGACACAGCTTCCAAGGATCCAAGTGAC 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 GAAAACTTTACTGGAGAGATACACAGTGAAGGAGACACAGCTTCCAAGGATCCAAGTGAC 655
Query 650 CGATCCAATCGCAAGATACTTTGGACTAAAACGTGGGCAAGTCGTGAAGATCATTCGTCC 709
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TGATCCAATCGCAAGATACTTTGGACTAAAACGTGGGCAAGTCGTGAAGATCATTCGTCC 715
Query 710 TAGTGAAACTGCTGGTCGTTATGTTACCTATCGTTACGTTGTATAAGCCAAAACAAAAAG 769
|||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||| |
Sbjct 716 GAGTGAAACGGCTGGTCGTTATGTTACCTATCGTTATGTTGTATAAGCCAAAGCAAAAGG 775
Query 770 CTTTTGTGGATTGGATTGCGAATTGAACGCT-AGAGTTGTGAAACATAAGAGTAATGCTT 828
||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 776 CTTTTGTGGATTGTAATGCGAATTGAACGCTGAGAGTTGTGAAACATAAGAGTAATGCTT 835
Query 829 TTGTATTAAACCAAACTGTTTGACTGTGTTTTATTTTTGTTTGTCAGATATGAGAA-TTA 887
||||| |||||||||||| | |||||||||||||||||||||||| |||| ||||| |||
Sbjct 836 TTGTACTAAACCAAACTGAT-GACTGTGTTTTATTTTTGTTTGTCCGATAGGAGAAATTA 894
Query 888 AAGCTTGAAACAACTTATTTGTATTAGTTTTCTATCCAAAAACTTGC 934
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 AAGCTTGAAACAACTTATTTGTATTAGTTTTCTATCCAAAAACTTGC 941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45662839623
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5