BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479746 Length=2110 Score E Sequences producing significant alignments: (Bits) Value AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial RN... 3216 0.0 AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA... 1559 0.0 > AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial RNA helicase 2 | chr3:7892537-7895366 FORWARD LENGTH=2176 Length=2176 Score = 3216 bits (1741), Expect = 0.0 Identities = 2015/2141 (94%), Gaps = 44/2141 (2%) Strand=Plus/Plus Query 1 GAACTAAAACCCTTTG-C-T-TTTC-T--TCTCTCTAAATCCCTAATTCTCCAAATTTTG 54 |||||||||||||||| | | |||| | ||||||||||||||||||||||||||||||| Sbjct 2 GAACTAAAACCCTTTGCCTTCTTTCTTCATCTCTCTAAATCCCTAATTCTCCAAATTTTG 61 Query 55 GGGTTTTACATTTTCCCTTATCAAAGA-AACACCTGAATCTGAAAATGATCACTACAGTA 113 |||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 62 GGGTTTTACATTTT-CCTTATC-AAGAGAACACCTGAATCTGAAAATGATCACTACAGTG 119 Query 114 CTACGTCGATCTCTCCTTGATGCGTCGAAGAGGAATCTCTCCGCTTCGTTGACCTCAATC 173 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 CTACGACGATCTCTCCTTGATGCGTCGAAGAGGAATCTCTCCGCTTCGTTGACCTCAATC 179 Query 174 AATGCGGCTCTGTTTCACAACCTTGCTCCAGCCGCCGCTAGAGTCTCCGATCTAG-CTGT 232 ||| | | ||||||||||||||| || ||||||||| ||||||||||||| |||| || | Sbjct 180 AATACTGTTCTGTTTCACAACCTGGCCCCAGCCGCCACTAGAGTCTCCGACCTAGCCT-T 238 Query 233 AATCGGATCTTCCGATGTC-AAGCCTGGGTTTTTATCTGGTGTTAAAGCG-AGGGAGTTT 290 ||| ||||||||||||||| ||| |||||||| | ||||||| ||||| | ||| || Sbjct 239 AATTGGATCTTCCGATGTCAAAG-CTGGGTTTCCGTTTGGTGTTGAAGCGAAAGGA-ATT 296 Query 291 CATTTTGAATCTGGGCCTTTGGAGTTTAGAGCTTCGATGGTTTCTTC-TGCTGGGTTTGC 349 |||||| |||||||||| ||||| |||||||||||||||||||| || ||||| ||||| Sbjct 297 CATTTTCAATCTGGGCCGTTGGATTTTAGAGCTTCGATGGTTTC-TCAAGCTGGATTTGC 355 Query 350 TATATCTGAGAGTAGCGAGAGAAGGGTCGGAGATTCGGAGA---------GTGATGGGCT 400 || ||||||||||||||||||||||| || |||||||||| |||||||||| Sbjct 356 GATCTCTGAGAGTAGCGAGAGAAGGGTTGGTGATTCGGAGAGTGTTGGTGGTGATGGGCT 415 Query 401 TGCGATATCTGAGCTTGGAATATCTCCGGAGATTGTTAAAGCTTTGAGTAGTAAGGGTAT 460 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 416 TGCGATATCTGAGCTTGGGATATCTCCGGAGATTGTTAAAGCTTTGAGTAGTAAGGGTAT 475 Query 461 TGAGAAACTCTTTCCTATTCAGAAAGCTGTGTTGGAGCCAGCTATGGAGGGTCGAGATAT 520 ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| Sbjct 476 TGAGAAACTCTTTCCTATTCAGAAAGCTGTGCTGGAGCCAGCGATGGAGGGTCGAGATAT 535 Query 521 GATTGGTCGTGCTAGGACTGGAACGGGAAAGACACTTGCTTTTGGGATTCCAATCATTGA 580 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 536 GATTGGTCGTGCTAGGACTGGAACGGGAAAGACACTTGCTTTTGGGATTCCTATCATTGA 595 Query 581 CAAAATCATCAAATACAACGCTAAACATGGACGAGGGAGGAATCCGCTTTGCTTGGTTTT 640 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 596 CAAAATCATCAAATACAACGCTAAACATGGACGAGGGAGGAATCCGCTTTGTTTGGTTTT 655 Query 641 GGCACCGACAAGGGAGCTTGCTCGCCAGGTCGAGAAGGAGTTTAGGGAATCTGCTCCGAG 700 |||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 656 GGCACCGACAAGAGAGCTTGCTCGCCAGGTTGAGAAGGAGTTTAGGGAGTCTGCTCCGAG 715 Query 701 CTTGGATACTATTTGTCTTTATGGAGGTACACCGATTGGACAGCAAATGAGGCAGCTTGA 760 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 716 CTTGGATACTATTTGTCTTTATGGAGGTACACCGATTGGACAGCAAATGAGGCAGCTTGA 775 Query 761 CTATGGTGTTGATGTGGCGGTTGGAACTCCTGGTCGTGTTATTGATCTGATGAAAAGGGG 820 |||||||||||||||||||||||||||||| |||||||| |||||||||||||| || || Sbjct 776 CTATGGTGTTGATGTGGCGGTTGGAACTCCAGGTCGTGTCATTGATCTGATGAAGAGAGG 835 Query 821 AGCTTTGAATCTGTCAGAGGTTCAGTTTGTGGTTCTGGATGAAGCTGATCAGATGCTTCA 880 |||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| Sbjct 836 AGCTTTGAATCTATCGGAAGTTCAGTTTGTGGTTCTGGATGAAGCTGATCAGATGCTTCA 895 Query 881 AGTTGGATTTGCCGAGGATGTTGAAATAATATTGGAAAAGTTGCCTGAGAAACGTCAGAG 940 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 896 AGTTGGATTTGCTGAGGATGTTGAAATAATATTGGAAAAGTTGCCTGAGAAACGTCAGAG 955 Query 941 TATGATGTTTTCTGCTACAATGCCGAGTTGGATCAGATCTCTCACCAAGAAGTACCTGAA 1000 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 956 TATGATGTTTTCTGCAACAATGCCGAGTTGGATCAGATCTCTCACTAAGAAGTACCTGAA 1015 Query 1001 TAATCCTTTGACAATTGATCTTGTTGGAGATTCTGATCAGAAACTCGCAGATGGAATTAC 1060 ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1016 TAATCCTTTGACAGTTGATCTTGTTGGAGATTCTGATCAGAAACTAGCAGATGGAATTAC 1075 Query 1061 GACGTATTCTATCATAGCAGATTCTTATGGAAGAGCATCCATTATTGGTCCTCTTGTAAC 1120 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1076 GACATATTCTATCATAGCAGATTCTTATGGAAGAGCATCCATTATTGGTCCTCTTGTAAC 1135 Query 1121 AGAGCATGCTAAAGGAGGAAAATGCATTGTTTTTACACAAACAAAACGAGATGCTGATCG 1180 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1136 GGAGCATGCCAAAGGAGGAAAATGCATTGTTTTTACACAAACAAAACGAGATGCTGATCG 1195 Query 1181 CCTTTCATATGCATTGGCGAGAAGCTTCAAATGCGAAGCTTTACACGGTGATATATCCCA 1240 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 1196 CCTTTCATATGCATTGGCTAGAAGCTTCAAATGTGAAGCTTTACACGGTGATATATCCCA 1255 Query 1241 GAGTCAGAGGGAAAGAACGCTTGCTGGTTTCCGAGATGGGCATTTTAATATTCTTGTTGC 1300 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1256 GAGTCAGAGGGAAAGAACGCTTGCTGGTTTCCGAGATGGGCATTTCAATATTCTTGTTGC 1315 Query 1301 AACTGATGTTGCTGCCCGTGGACTTGATGTGCCTAATGTTGATTTGATCATTCACTATGA 1360 ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 1316 GACTGATGTTGCTGCCCGTGGACTTGATGTACCTAATGTCGATTTGATCATTCACTATGA 1375 Query 1361 GCTTCCTAATAACACGGAGACATTTGTTCATCGAACCGGGCGAACGGGTCGTGCTGGAAA 1420 ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 1376 GCTTCCTAATAACACGGAGACATTTGTCCATCGAACCGGGCGAACGGGTCGGGCTGGAAA 1435 Query 1421 GAAAGGAAGTGCTATTCTCATCTACAGTCAAGATCAATCCAGGGCTGTAAAAATAATTGA 1480 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1436 GAAAGGAAGTGCTATTCTGATCTACAGTCAAGATCAATCCAGGGCTGTAAAAATAATTGA 1495 Query 1481 GAGAGAAGTTGGGAGCCGATTCACCGAGCTCCCTAGCATTGCTGTGGAACGTGGAAGCGC 1540 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1496 GAGAGAAGTTGGGAGCCGATTCACTGAGCTCCCTAGCATTGCTGTGGAACGTGGAAGCGC 1555 Query 1541 AAGCATGTTTGAAGGAATAGGTTCTCGATCCGGTGGGTCCTTTGGAGGAGGCATGAGGGA 1600 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1556 AAGCATGTTTGAAGGAATAGGTTCTCGATCCGGTGGTTCCTTTGGAGGAGGCATGAGGGA 1615 Query 1601 TCGCGGTTCAAGCTTTGGTGGTCGTTCAGGCGGCGGC--T-ATGGTGGCAGCAGTGGTGG 1657 ||| ||||||||||||||||||||||||||||| || | ||||||||||||||||||| Sbjct 1616 TCGTGGTTCAAGCTTTGGTGGTCGTTCAGGCGGTGGTGGTTATGGTGGCAGCAGTGGTGG 1675 Query 1658 CTATGGTGGTGGCCGTTCAGGCGGATCAAGCAACCGTTATTCTGGTGATTCTGACCGTTC 1717 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1676 TTATGGTGGTGGGCGTTCAGGCGGATCAAGCAACCGTTATTCTGGTGATTCTGACCGTTC 1735 Query 1718 TGGTTTCGGGAGCTTCGGTATGCGTTCTCCTGAAGGATATGGTTCAGATCGTTCTTCTCA 1777 |||||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct 1736 TGGTTTTGGGAGCTTCGGTATGCGTTCTCCTGAGGGATATGGTTCGGATCGTTCATCTCA 1795 Query 1778 GTCAGGTGGAAGGAGCAGTTTTGGTGGTGGTCGTTCAGGCGGATCATCAAACAACCGTTC 1837 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 1796 GTCAGGTGGAAGGAGCAGCTTTGGTGGTGGTCGTTCAGGCGGATCATCAAACAATCGTTC 1855 Query 1838 CTCTGGTTTTGGTGACTTTGGCTCTGACCGTTCTTCTCAGTCAGGCGGAAGGAGCAGCTT 1897 ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1856 CTCTGGTTTCGGGGACTTTGGCTCTGACCGTTCTTCTCAGTCAGGCGGAAGGAGCAGCTT 1915 Query 1898 TGGTGGGTTTGGCTCAAACGATGGGAAAAGATCGTACTGAGA-A-GTGTTTTT--ACCCG 1953 |||||||||||| ||||| |||||||||||||| |||||||| | |||||||| | ||| Sbjct 1916 TGGTGGGTTTGGATCAAATGATGGGAAAAGATCTTACTGAGAGAAGTGTTTTTGGAGCCG 1975 Query 1954 AACCGGCAATAATTGGTTTGACCTTAGGAGGAGG-A---TTCGGTGAGTGGCTCGAGTAG 2009 | ||||||||||||||||||||| |||||||||| | |||||||| ||||||||| Sbjct 1976 AGCCGGCAATAATTGGTTTGACCCTAGGAGGAGGGAGGATTCGGTGA----CTCGAGTAG 2031 Query 2010 ATTAGTTACTACGGCGGATACGAAGGAGTCAAGTTATATATATAAAAATCTGTAGCTATG 2069 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2032 ATTAGTTACTACGGCGGATACGAAGGAGTCAAGTTATATATATAAA--TCTGTAGCTATG 2089 Query 2070 TAAAACAAACACATACTTTTTGAAGTTATGTTATCATTATT 2110 ||||||||||| ||||||| |||||||||||||||| ||| Sbjct 2090 TAAAACAAACATATACTTTC-GAAGTTATGTTATCATCATT 2129 > AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA helicase 1 | chr3:7887286-7890019 FORWARD LENGTH=2142 Length=2142 Score = 1559 bits (844), Expect = 0.0 Identities = 1090/1209 (90%), Gaps = 16/1209 (1%) Strand=Plus/Plus Query 391 GTGATGGGCTTGCGATATCTGAGCTTGGAATATCTCCGGAGATTGTTAAAGCTTTG-AGT 449 ||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||| || Sbjct 434 GTGATGGGCTTGCGATAGCTGATCTTGGTATATCTCCGGAGATTGTTAAAGCTTTGAAG- 492 Query 450 AGTAAGGGTATTGAGAAACTCTTTCCTATTCAGAAAGCTGTGTTGGAGCCAGCTATGGAG 509 ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 493 GGTAGGGGTATTGAGAAACTCTTTCCTATTCAGAAAGCTGTGTTGGAGCCAGCGATGGAG 552 Query 510 GGTCGAGATATGATTGGTCGTGCTAGGACTGGAACGGGAAAGACACTTGCTTTTGGGATT 569 ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 553 GGTCGTGATATGATTGGCCGTGCAAGGACTGGAACGGGAAAGACACTTGCTTTTGGGATT 612 Query 570 CCAATCATTGACAAAATCATCAAATACAACGCTAAACATGGACGAGGGAGGAATCCGCTT 629 || || ||||||||||||||||||| ||||||||||||||| || |||| |||||| | Sbjct 613 CCTATTATTGACAAAATCATCAAATTCAACGCTAAACATGGTCGTGGGAAGAATCCTCAG 672 Query 630 TGCTTGGTTTTGGCACCGACAAGGGAGCTTGCTCGCCAGGTCGAGAAGGAGTTTAGGGAA 689 |||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| |||||| Sbjct 673 TGCTTGGTTTTGGCACCGACGAGGGAGCTTGCTCGTCAGGTTGAGAAAGAGTTCAGGGAA 732 Query 690 TCTGCTCCGAGCTTGGATACTATTTGTCTTTATGGAGGTACACCGATTGGACAGCAAATG 749 |||||||| || ||||||||||||||||| |||||||||||||| || || || |||||| Sbjct 733 TCTGCTCCAAGTTTGGATACTATTTGTCTCTATGGAGGTACACCAATCGGGCAACAAATG 792 Query 750 AGGCAGCTTGA-CTATGGTGTTGATGTGGCGGTTGGAACTCCTGGTCGTGTTATTGATCT 808 ||| |||| || ||||||| ||||||||||||||||||||||||||||| | |||||||| Sbjct 793 AGGGAGCT-GAACTATGGTATTGATGTGGCGGTTGGAACTCCTGGTCGTATCATTGATCT 851 Query 809 GATGAAAAGGGGAGCTTTGAATCTGTCAGAGGTTCAGTTTGTGGTTCTGGATGAAGCTGA 868 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 852 GATGAAAAGGGGAGCTTTGAATCTATCAGAGGTTCAGTTTGTGGTTCTTGATGAAGCTGA 911 Query 869 TCAGATGCTTCAAGTTGGATTTGCCGAGGATGTTGAAATAATATTGGAAAAGTTGCCTGA 928 |||||||||||||||||||||||| || |||||||||||||||||| | |||||||| | Sbjct 912 TCAGATGCTTCAAGTTGGATTTGCGGAAGATGTTGAAATAATATTGCAGAAGTTGCCAGC 971 Query 929 GAAACGTCAGAGTATGATGTTTTCTGCTACAATGCCGAGTTGGATCAGATCTCTCACCAA 988 ||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 972 GAAGCGTCAGAGTATGATGTTTTCTGCAACAATGCCAAGTTGGATCAGATCTCTCACCAA 1031 Query 989 GAAGTACCTGAATAATCCTTTGACAATTGATCTTGTTGGAGATTCTGATCAGAAACTCGC 1048 |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 1032 GAAGTACCTGAACAATCCTTTGACAATTGATCTTGTTGGAGATTCAGATCAGAAACTTGC 1091 Query 1049 AGATGGAATTACGACGTATTCTATCA-TAGCAGATTCTTATGGAAGAGCATCCATTATTG 1107 |||||| ||||| | |||||||||| | |||||||||||||||||||||||||| |||| Sbjct 1092 AGATGGGATTACTATGTATTCTATCGCT-GCAGATTCTTATGGAAGAGCATCCATCATTG 1150 Query 1108 GTCCTCTTGTAACAG-AGCATG-CTAAAGGAGGAAAATGCATTGTTTTTACACAAACAAA 1165 |||||||||||| || | |||| | |||||||||||||||||||| ||||| |||||||| Sbjct 1151 GTCCTCTTGTAA-AGGAACATGGC-AAAGGAGGAAAATGCATTGTCTTTACCCAAACAAA 1208 Query 1166 ACGAGATGCTGATCGCCTTTCATATGCATTGGCGAGAAGCT-TCAAATGCGAAGCTTTAC 1224 ||| ||||| ||||||||| ||| || |||||| | ||||| | ||||| |||||||||| Sbjct 1209 ACGTGATGCAGATCGCCTTGCATTTGGATTGGCAAAAAGCTAT-AAATGTGAAGCTTTAC 1267 Query 1225 ACGGTGATATATCCCAGAG-TCAGAGGGAAAGAACGCTTGCTGGTTTCCGAGATGGGCAT 1283 ||||||| ||||| || || |||||| |||||||| |||||||||||| | |||||| || Sbjct 1268 ACGGTGACATATCTCA-AGCTCAGAGAGAAAGAACACTTGCTGGTTTCAGGGATGGGAAT 1326 Query 1284 TTTAATATTCTTGTTGCAACTGATGTTGCTGCCCGTGGACTTGATGTGCCTAATGTTGAT 1343 || | |||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 1327 TTCAGTATTCTTGTTGCAACTGATGTTGCTGCCCGTGGACTTGATGTACCTAATGTCGAT 1386 Query 1344 TT-GATCATTCACTATGAGCTTCCTAATAACACGGAGACATTTGTTCATCGAACCGGGCG 1402 || | | ||||| |||||||||||||||||||||||||| |||||||| ||||| ||||| Sbjct 1387 TTAG-TAATTCATTATGAGCTTCCTAATAACACGGAGACGTTTGTTCACCGAACGGGGCG 1445 Query 1403 AACGGGTCGTGCTGGAAAGAAAGGAAGTGCTATTCTCATCTACAGTCAAGATCAATCCAG 1462 ||| ||||||||||||||||||||||| || ||||||||| || ||||||||||| |||| Sbjct 1446 AACTGGTCGTGCTGGAAAGAAAGGAAGCGCGATTCTCATCCACGGTCAAGATCAAACCAG 1505 Query 1463 GGCTGTAAAAATAATTGAGAGAGAAGTTGGGAGCCGATTCACCGAGCTCCCTAGCATTGC 1522 |||||| ||||| ||||||| |||||| || ||| |||||| ||||| ||||||||||| Sbjct 1506 GGCTGTTAAAATGATTGAGAAAGAAGTCGGAAGCAGATTCAATGAGCTGCCTAGCATTGC 1565 Query 1523 TGTGGAACGTGGAAGCGCAAGCATGTTTGAAGGAATAGGTTCTCGATCCGGTGGGTCCTT 1582 ||||||| | |||||||||||||||||||||||| ||||| || |||| |||||||| || Sbjct 1566 TGTGGAAAGAGGAAGCGCAAGCATGTTTGAAGGAGTAGGTGCTAGATCTGGTGGGTCGTT 1625 Query 1583 TGGAGGAGG 1591 |||||||| Sbjct 1626 CGGAGGAGG 1634 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 104617935780 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5