BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479746
Length=2110
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial RN... 3216 0.0
AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA... 1559 0.0
> AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial
RNA helicase 2 | chr3:7892537-7895366 FORWARD LENGTH=2176
Length=2176
Score = 3216 bits (1741), Expect = 0.0
Identities = 2015/2141 (94%), Gaps = 44/2141 (2%)
Strand=Plus/Plus
Query 1 GAACTAAAACCCTTTG-C-T-TTTC-T--TCTCTCTAAATCCCTAATTCTCCAAATTTTG 54
|||||||||||||||| | | |||| | |||||||||||||||||||||||||||||||
Sbjct 2 GAACTAAAACCCTTTGCCTTCTTTCTTCATCTCTCTAAATCCCTAATTCTCCAAATTTTG 61
Query 55 GGGTTTTACATTTTCCCTTATCAAAGA-AACACCTGAATCTGAAAATGATCACTACAGTA 113
|||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 62 GGGTTTTACATTTT-CCTTATC-AAGAGAACACCTGAATCTGAAAATGATCACTACAGTG 119
Query 114 CTACGTCGATCTCTCCTTGATGCGTCGAAGAGGAATCTCTCCGCTTCGTTGACCTCAATC 173
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTACGACGATCTCTCCTTGATGCGTCGAAGAGGAATCTCTCCGCTTCGTTGACCTCAATC 179
Query 174 AATGCGGCTCTGTTTCACAACCTTGCTCCAGCCGCCGCTAGAGTCTCCGATCTAG-CTGT 232
||| | | ||||||||||||||| || ||||||||| ||||||||||||| |||| || |
Sbjct 180 AATACTGTTCTGTTTCACAACCTGGCCCCAGCCGCCACTAGAGTCTCCGACCTAGCCT-T 238
Query 233 AATCGGATCTTCCGATGTC-AAGCCTGGGTTTTTATCTGGTGTTAAAGCG-AGGGAGTTT 290
||| ||||||||||||||| ||| |||||||| | ||||||| ||||| | ||| ||
Sbjct 239 AATTGGATCTTCCGATGTCAAAG-CTGGGTTTCCGTTTGGTGTTGAAGCGAAAGGA-ATT 296
Query 291 CATTTTGAATCTGGGCCTTTGGAGTTTAGAGCTTCGATGGTTTCTTC-TGCTGGGTTTGC 349
|||||| |||||||||| ||||| |||||||||||||||||||| || ||||| |||||
Sbjct 297 CATTTTCAATCTGGGCCGTTGGATTTTAGAGCTTCGATGGTTTC-TCAAGCTGGATTTGC 355
Query 350 TATATCTGAGAGTAGCGAGAGAAGGGTCGGAGATTCGGAGA---------GTGATGGGCT 400
|| ||||||||||||||||||||||| || |||||||||| ||||||||||
Sbjct 356 GATCTCTGAGAGTAGCGAGAGAAGGGTTGGTGATTCGGAGAGTGTTGGTGGTGATGGGCT 415
Query 401 TGCGATATCTGAGCTTGGAATATCTCCGGAGATTGTTAAAGCTTTGAGTAGTAAGGGTAT 460
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TGCGATATCTGAGCTTGGGATATCTCCGGAGATTGTTAAAGCTTTGAGTAGTAAGGGTAT 475
Query 461 TGAGAAACTCTTTCCTATTCAGAAAGCTGTGTTGGAGCCAGCTATGGAGGGTCGAGATAT 520
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 476 TGAGAAACTCTTTCCTATTCAGAAAGCTGTGCTGGAGCCAGCGATGGAGGGTCGAGATAT 535
Query 521 GATTGGTCGTGCTAGGACTGGAACGGGAAAGACACTTGCTTTTGGGATTCCAATCATTGA 580
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 536 GATTGGTCGTGCTAGGACTGGAACGGGAAAGACACTTGCTTTTGGGATTCCTATCATTGA 595
Query 581 CAAAATCATCAAATACAACGCTAAACATGGACGAGGGAGGAATCCGCTTTGCTTGGTTTT 640
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 596 CAAAATCATCAAATACAACGCTAAACATGGACGAGGGAGGAATCCGCTTTGTTTGGTTTT 655
Query 641 GGCACCGACAAGGGAGCTTGCTCGCCAGGTCGAGAAGGAGTTTAGGGAATCTGCTCCGAG 700
|||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 656 GGCACCGACAAGAGAGCTTGCTCGCCAGGTTGAGAAGGAGTTTAGGGAGTCTGCTCCGAG 715
Query 701 CTTGGATACTATTTGTCTTTATGGAGGTACACCGATTGGACAGCAAATGAGGCAGCTTGA 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CTTGGATACTATTTGTCTTTATGGAGGTACACCGATTGGACAGCAAATGAGGCAGCTTGA 775
Query 761 CTATGGTGTTGATGTGGCGGTTGGAACTCCTGGTCGTGTTATTGATCTGATGAAAAGGGG 820
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| || ||
Sbjct 776 CTATGGTGTTGATGTGGCGGTTGGAACTCCAGGTCGTGTCATTGATCTGATGAAGAGAGG 835
Query 821 AGCTTTGAATCTGTCAGAGGTTCAGTTTGTGGTTCTGGATGAAGCTGATCAGATGCTTCA 880
|||||||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 836 AGCTTTGAATCTATCGGAAGTTCAGTTTGTGGTTCTGGATGAAGCTGATCAGATGCTTCA 895
Query 881 AGTTGGATTTGCCGAGGATGTTGAAATAATATTGGAAAAGTTGCCTGAGAAACGTCAGAG 940
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 AGTTGGATTTGCTGAGGATGTTGAAATAATATTGGAAAAGTTGCCTGAGAAACGTCAGAG 955
Query 941 TATGATGTTTTCTGCTACAATGCCGAGTTGGATCAGATCTCTCACCAAGAAGTACCTGAA 1000
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 956 TATGATGTTTTCTGCAACAATGCCGAGTTGGATCAGATCTCTCACTAAGAAGTACCTGAA 1015
Query 1001 TAATCCTTTGACAATTGATCTTGTTGGAGATTCTGATCAGAAACTCGCAGATGGAATTAC 1060
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1016 TAATCCTTTGACAGTTGATCTTGTTGGAGATTCTGATCAGAAACTAGCAGATGGAATTAC 1075
Query 1061 GACGTATTCTATCATAGCAGATTCTTATGGAAGAGCATCCATTATTGGTCCTCTTGTAAC 1120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 GACATATTCTATCATAGCAGATTCTTATGGAAGAGCATCCATTATTGGTCCTCTTGTAAC 1135
Query 1121 AGAGCATGCTAAAGGAGGAAAATGCATTGTTTTTACACAAACAAAACGAGATGCTGATCG 1180
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 GGAGCATGCCAAAGGAGGAAAATGCATTGTTTTTACACAAACAAAACGAGATGCTGATCG 1195
Query 1181 CCTTTCATATGCATTGGCGAGAAGCTTCAAATGCGAAGCTTTACACGGTGATATATCCCA 1240
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1196 CCTTTCATATGCATTGGCTAGAAGCTTCAAATGTGAAGCTTTACACGGTGATATATCCCA 1255
Query 1241 GAGTCAGAGGGAAAGAACGCTTGCTGGTTTCCGAGATGGGCATTTTAATATTCTTGTTGC 1300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1256 GAGTCAGAGGGAAAGAACGCTTGCTGGTTTCCGAGATGGGCATTTCAATATTCTTGTTGC 1315
Query 1301 AACTGATGTTGCTGCCCGTGGACTTGATGTGCCTAATGTTGATTTGATCATTCACTATGA 1360
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1316 GACTGATGTTGCTGCCCGTGGACTTGATGTACCTAATGTCGATTTGATCATTCACTATGA 1375
Query 1361 GCTTCCTAATAACACGGAGACATTTGTTCATCGAACCGGGCGAACGGGTCGTGCTGGAAA 1420
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1376 GCTTCCTAATAACACGGAGACATTTGTCCATCGAACCGGGCGAACGGGTCGGGCTGGAAA 1435
Query 1421 GAAAGGAAGTGCTATTCTCATCTACAGTCAAGATCAATCCAGGGCTGTAAAAATAATTGA 1480
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 GAAAGGAAGTGCTATTCTGATCTACAGTCAAGATCAATCCAGGGCTGTAAAAATAATTGA 1495
Query 1481 GAGAGAAGTTGGGAGCCGATTCACCGAGCTCCCTAGCATTGCTGTGGAACGTGGAAGCGC 1540
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1496 GAGAGAAGTTGGGAGCCGATTCACTGAGCTCCCTAGCATTGCTGTGGAACGTGGAAGCGC 1555
Query 1541 AAGCATGTTTGAAGGAATAGGTTCTCGATCCGGTGGGTCCTTTGGAGGAGGCATGAGGGA 1600
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1556 AAGCATGTTTGAAGGAATAGGTTCTCGATCCGGTGGTTCCTTTGGAGGAGGCATGAGGGA 1615
Query 1601 TCGCGGTTCAAGCTTTGGTGGTCGTTCAGGCGGCGGC--T-ATGGTGGCAGCAGTGGTGG 1657
||| ||||||||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct 1616 TCGTGGTTCAAGCTTTGGTGGTCGTTCAGGCGGTGGTGGTTATGGTGGCAGCAGTGGTGG 1675
Query 1658 CTATGGTGGTGGCCGTTCAGGCGGATCAAGCAACCGTTATTCTGGTGATTCTGACCGTTC 1717
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 TTATGGTGGTGGGCGTTCAGGCGGATCAAGCAACCGTTATTCTGGTGATTCTGACCGTTC 1735
Query 1718 TGGTTTCGGGAGCTTCGGTATGCGTTCTCCTGAAGGATATGGTTCAGATCGTTCTTCTCA 1777
|||||| |||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 1736 TGGTTTTGGGAGCTTCGGTATGCGTTCTCCTGAGGGATATGGTTCGGATCGTTCATCTCA 1795
Query 1778 GTCAGGTGGAAGGAGCAGTTTTGGTGGTGGTCGTTCAGGCGGATCATCAAACAACCGTTC 1837
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1796 GTCAGGTGGAAGGAGCAGCTTTGGTGGTGGTCGTTCAGGCGGATCATCAAACAATCGTTC 1855
Query 1838 CTCTGGTTTTGGTGACTTTGGCTCTGACCGTTCTTCTCAGTCAGGCGGAAGGAGCAGCTT 1897
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1856 CTCTGGTTTCGGGGACTTTGGCTCTGACCGTTCTTCTCAGTCAGGCGGAAGGAGCAGCTT 1915
Query 1898 TGGTGGGTTTGGCTCAAACGATGGGAAAAGATCGTACTGAGA-A-GTGTTTTT--ACCCG 1953
|||||||||||| ||||| |||||||||||||| |||||||| | |||||||| | |||
Sbjct 1916 TGGTGGGTTTGGATCAAATGATGGGAAAAGATCTTACTGAGAGAAGTGTTTTTGGAGCCG 1975
Query 1954 AACCGGCAATAATTGGTTTGACCTTAGGAGGAGG-A---TTCGGTGAGTGGCTCGAGTAG 2009
| ||||||||||||||||||||| |||||||||| | |||||||| |||||||||
Sbjct 1976 AGCCGGCAATAATTGGTTTGACCCTAGGAGGAGGGAGGATTCGGTGA----CTCGAGTAG 2031
Query 2010 ATTAGTTACTACGGCGGATACGAAGGAGTCAAGTTATATATATAAAAATCTGTAGCTATG 2069
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2032 ATTAGTTACTACGGCGGATACGAAGGAGTCAAGTTATATATATAAA--TCTGTAGCTATG 2089
Query 2070 TAAAACAAACACATACTTTTTGAAGTTATGTTATCATTATT 2110
||||||||||| ||||||| |||||||||||||||| |||
Sbjct 2090 TAAAACAAACATATACTTTC-GAAGTTATGTTATCATCATT 2129
> AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA
helicase 1 | chr3:7887286-7890019 FORWARD LENGTH=2142
Length=2142
Score = 1559 bits (844), Expect = 0.0
Identities = 1090/1209 (90%), Gaps = 16/1209 (1%)
Strand=Plus/Plus
Query 391 GTGATGGGCTTGCGATATCTGAGCTTGGAATATCTCCGGAGATTGTTAAAGCTTTG-AGT 449
||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||| ||
Sbjct 434 GTGATGGGCTTGCGATAGCTGATCTTGGTATATCTCCGGAGATTGTTAAAGCTTTGAAG- 492
Query 450 AGTAAGGGTATTGAGAAACTCTTTCCTATTCAGAAAGCTGTGTTGGAGCCAGCTATGGAG 509
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 493 GGTAGGGGTATTGAGAAACTCTTTCCTATTCAGAAAGCTGTGTTGGAGCCAGCGATGGAG 552
Query 510 GGTCGAGATATGATTGGTCGTGCTAGGACTGGAACGGGAAAGACACTTGCTTTTGGGATT 569
||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 553 GGTCGTGATATGATTGGCCGTGCAAGGACTGGAACGGGAAAGACACTTGCTTTTGGGATT 612
Query 570 CCAATCATTGACAAAATCATCAAATACAACGCTAAACATGGACGAGGGAGGAATCCGCTT 629
|| || ||||||||||||||||||| ||||||||||||||| || |||| |||||| |
Sbjct 613 CCTATTATTGACAAAATCATCAAATTCAACGCTAAACATGGTCGTGGGAAGAATCCTCAG 672
Query 630 TGCTTGGTTTTGGCACCGACAAGGGAGCTTGCTCGCCAGGTCGAGAAGGAGTTTAGGGAA 689
|||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| ||||||
Sbjct 673 TGCTTGGTTTTGGCACCGACGAGGGAGCTTGCTCGTCAGGTTGAGAAAGAGTTCAGGGAA 732
Query 690 TCTGCTCCGAGCTTGGATACTATTTGTCTTTATGGAGGTACACCGATTGGACAGCAAATG 749
|||||||| || ||||||||||||||||| |||||||||||||| || || || ||||||
Sbjct 733 TCTGCTCCAAGTTTGGATACTATTTGTCTCTATGGAGGTACACCAATCGGGCAACAAATG 792
Query 750 AGGCAGCTTGA-CTATGGTGTTGATGTGGCGGTTGGAACTCCTGGTCGTGTTATTGATCT 808
||| |||| || ||||||| ||||||||||||||||||||||||||||| | ||||||||
Sbjct 793 AGGGAGCT-GAACTATGGTATTGATGTGGCGGTTGGAACTCCTGGTCGTATCATTGATCT 851
Query 809 GATGAAAAGGGGAGCTTTGAATCTGTCAGAGGTTCAGTTTGTGGTTCTGGATGAAGCTGA 868
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 852 GATGAAAAGGGGAGCTTTGAATCTATCAGAGGTTCAGTTTGTGGTTCTTGATGAAGCTGA 911
Query 869 TCAGATGCTTCAAGTTGGATTTGCCGAGGATGTTGAAATAATATTGGAAAAGTTGCCTGA 928
|||||||||||||||||||||||| || |||||||||||||||||| | |||||||| |
Sbjct 912 TCAGATGCTTCAAGTTGGATTTGCGGAAGATGTTGAAATAATATTGCAGAAGTTGCCAGC 971
Query 929 GAAACGTCAGAGTATGATGTTTTCTGCTACAATGCCGAGTTGGATCAGATCTCTCACCAA 988
||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 972 GAAGCGTCAGAGTATGATGTTTTCTGCAACAATGCCAAGTTGGATCAGATCTCTCACCAA 1031
Query 989 GAAGTACCTGAATAATCCTTTGACAATTGATCTTGTTGGAGATTCTGATCAGAAACTCGC 1048
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1032 GAAGTACCTGAACAATCCTTTGACAATTGATCTTGTTGGAGATTCAGATCAGAAACTTGC 1091
Query 1049 AGATGGAATTACGACGTATTCTATCA-TAGCAGATTCTTATGGAAGAGCATCCATTATTG 1107
|||||| ||||| | |||||||||| | |||||||||||||||||||||||||| ||||
Sbjct 1092 AGATGGGATTACTATGTATTCTATCGCT-GCAGATTCTTATGGAAGAGCATCCATCATTG 1150
Query 1108 GTCCTCTTGTAACAG-AGCATG-CTAAAGGAGGAAAATGCATTGTTTTTACACAAACAAA 1165
|||||||||||| || | |||| | |||||||||||||||||||| ||||| ||||||||
Sbjct 1151 GTCCTCTTGTAA-AGGAACATGGC-AAAGGAGGAAAATGCATTGTCTTTACCCAAACAAA 1208
Query 1166 ACGAGATGCTGATCGCCTTTCATATGCATTGGCGAGAAGCT-TCAAATGCGAAGCTTTAC 1224
||| ||||| ||||||||| ||| || |||||| | ||||| | ||||| ||||||||||
Sbjct 1209 ACGTGATGCAGATCGCCTTGCATTTGGATTGGCAAAAAGCTAT-AAATGTGAAGCTTTAC 1267
Query 1225 ACGGTGATATATCCCAGAG-TCAGAGGGAAAGAACGCTTGCTGGTTTCCGAGATGGGCAT 1283
||||||| ||||| || || |||||| |||||||| |||||||||||| | |||||| ||
Sbjct 1268 ACGGTGACATATCTCA-AGCTCAGAGAGAAAGAACACTTGCTGGTTTCAGGGATGGGAAT 1326
Query 1284 TTTAATATTCTTGTTGCAACTGATGTTGCTGCCCGTGGACTTGATGTGCCTAATGTTGAT 1343
|| | |||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1327 TTCAGTATTCTTGTTGCAACTGATGTTGCTGCCCGTGGACTTGATGTACCTAATGTCGAT 1386
Query 1344 TT-GATCATTCACTATGAGCTTCCTAATAACACGGAGACATTTGTTCATCGAACCGGGCG 1402
|| | | ||||| |||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 1387 TTAG-TAATTCATTATGAGCTTCCTAATAACACGGAGACGTTTGTTCACCGAACGGGGCG 1445
Query 1403 AACGGGTCGTGCTGGAAAGAAAGGAAGTGCTATTCTCATCTACAGTCAAGATCAATCCAG 1462
||| ||||||||||||||||||||||| || ||||||||| || ||||||||||| ||||
Sbjct 1446 AACTGGTCGTGCTGGAAAGAAAGGAAGCGCGATTCTCATCCACGGTCAAGATCAAACCAG 1505
Query 1463 GGCTGTAAAAATAATTGAGAGAGAAGTTGGGAGCCGATTCACCGAGCTCCCTAGCATTGC 1522
|||||| ||||| ||||||| |||||| || ||| |||||| ||||| |||||||||||
Sbjct 1506 GGCTGTTAAAATGATTGAGAAAGAAGTCGGAAGCAGATTCAATGAGCTGCCTAGCATTGC 1565
Query 1523 TGTGGAACGTGGAAGCGCAAGCATGTTTGAAGGAATAGGTTCTCGATCCGGTGGGTCCTT 1582
||||||| | |||||||||||||||||||||||| ||||| || |||| |||||||| ||
Sbjct 1566 TGTGGAAAGAGGAAGCGCAAGCATGTTTGAAGGAGTAGGTGCTAGATCTGGTGGGTCGTT 1625
Query 1583 TGGAGGAGG 1591
||||||||
Sbjct 1626 CGGAGGAGG 1634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104617935780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5