BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479747
Length=1241
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22345.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1729 0.0
> AT3G22345.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: F-box family protein with a domain
of unknown function (DUF295) (TAIR:AT3G03730.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
| chr3:7899215-7900514 FORWARD LENGTH=1300
Length=1300
Score = 1729 bits (936), Expect = 0.0
Identities = 1167/1272 (92%), Gaps = 42/1272 (3%)
Strand=Plus/Plus
Query 1 ATGGCAATGGAGCCGAAGAAGAAGAACTTGATTAGTTCCGACAACGATACAGAGTGGTCG 60
||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAACGGCGCCGAAGAAGAAG---TTGATTAGTTCCGACAACGATACAGAGTGGTCG 57
Query 61 CCGGTGCTTGCCCCCGACCTGATTCGATCGATCTTAGAACGCTTGAACTTTGTAGAGTTT 120
||||| |||||||| |||||||||||||||||||| ||||| |||||||||| ||||||
Sbjct 58 CCGGTTCTTGCCCCTGACCTGATTCGATCGATCTTCGAACGTTTGAACTTTGCGGAGTTT 117
Query 121 CATCGAGCCAGGTCCATCTCTTCAGATTGGTATTCCACAGCCGAATTATGCTACAGCCAA 180
|||||||| | ||| || |||| ||||||||||||||| || |||||||||||||| |||
Sbjct 118 CATCGAGCTATGTCAATTTCTTTAGATTGGTATTCCACTGCGGAATTATGCTACAGACAA 177
Query 181 AATCCAACTCCATGGCTCATTCTCTTTTCAAACTATAGCCATATTTCGTGTAAGTTGTTT 240
|| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 178 AACCCAACTCCATGGCTCATTCTCTTTTCAAACTATAGACATATTTCGTGTAGGTTGTTT 237
Query 241 GATCCTCTCCATGACAAAACCTACGTAATAAGAGACCTAGGGTTTGATTTCCATAGGAGT 300
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 238 GATCCTCTTCATGACAAAACCTACGTAATACGAGACCTAGGGTTTGATTTCCATAGGAGT 297
Query 301 CGTTGTTTGGCTACTTCTGGTAGCTGGTTCTTGATGTTAGATCATAGAACCGATTTTTAT 360
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 298 TGTTGTTTGGCTACTTCTGGTAGCTGGTTGTTGATGTTAGATCATAGAACCGATTTTTAT 357
Query 361 CTTTTGAATCTATTTACTCGAGAGAGGATTCGTCTTCCGACTTTGGAAGCAATGGATGGA 420
||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 358 CTTTTGAATCTGTTTACTCGAGAGAGGATTTGTCTTCCGACTTTGGAAGCAATCGATGGA 417
Query 421 CGGCAGATGAAGTTTGAGAGGGTTGGTGAGTCTGATTTCTTGAAGACATTCACTTATCAA 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TGGCAGATGAAGTTTGAGAGGGTTGGTGAGTCTGATTTCTTGAAGACATTCACTTATCGT 477
Query 481 GGAGGCTATGGAAGTTATTCTTCTGGTGAAAGCACCAAAGTTATAATAGAGAATGCGGTT 540
| ||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 478 GAAGGCTATAGAAGTTATTCTTCTGGTCTAAGCACCAAAGTTGTAATAGAGAATGCGGTG 537
Query 541 TTGTGGGTCGATGAAAGAAGCCGAGATTACTTAGTTGTGTGGAGCCTTGAGTGCTTCTTT 600
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 538 TTGTGGGTCGATGAAAGAAGCCGAGATTACTTAGTTGTGTGGAGCATTGAGTGCTTCTTT 597
Query 601 GCATATCATAAGAAAGGAGATAATAACAACAGCTGGAAAGTGTTTCAATTAAAGAAGAAC 660
||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||
Sbjct 598 GCATATCATAAGAAAGGAGATAATAACAAGACCTGGAAAGTGATTCAATTAAAGAAGAAT 657
Query 661 CAAG-GCTGCTCCGATATGGTGTTTAGAGAAAGCAAGCTTTACGTGCTTAGTCCAAGTCT 719
||| | ||||||||||| ||||||||||||||||||||||||||||||| ||||| |||
Sbjct 658 GAAGAG-TGCTCCGATATAGTGTTTAGAGAAAGCAAGCTTTACGTGCTTAATCCAAATCT 716
Query 720 AAACATTACTGTTTTAGATTTCTCTAGTTGTGATTCTCCTAATGAATGTGCAAGTTTCAC 779
||||||||||||||| |||||||||||| | | |||||| ||||||||||||||||||||
Sbjct 717 AAACATTACTGTTTTTGATTTCTCTAGT-G-G-TTCTCCAAATGAATGTGCAAGTTTCAC 773
Query 780 AACTCCGGAT---GGTCTCACATTATTTCCACTATCTTGTTTCGGCCATCTTGTTATAAC 836
| ||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 774 ATCTCAGGATATTGGTCTCACATTATATCCACTATCTTGTTTCGGCCATCTTGTTATAAC 833
Query 837 TTTGTCCGGAGAGGTTTTGATGATCAAA-CCAAGCCGATTTGGGATACCTTTCTTTGATG 895
||||||||||||||||||| |||||||| || |||||| ||||||| || ||||||||
Sbjct 834 TTTGTCCGGAGAGGTTTTGCTGATCAAAACCC-GCCGATATGGGATATATTCCTTTGATG 892
Query 896 TTTACAAGATGGATCCAAAATCATCAAAATGGAGAGAAATATATTCTTTAGGGAACGAAG 955
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 893 TTTACAAGATGGATCCAAAATCATCAAAATGGAGAGAAATTTATTCTTTAGGGAATGAAG 952
Query 956 CA-TTGCTTTTGGATCTAGGTACAACGATCGCAGCCAAAGAT--T-----------C--C 999
|| || |||||||||||||| ||||||||||||||||||||| | | |
Sbjct 953 CAATT-CTTTTGGATCTAGGAACAACGATCGCAGCCAAAGATGGTTTTGGATAAAACAGC 1011
Query 1000 TCATA-----G-A-TA--CAATGGGAGTAGTATATGCAAT-AAAAGCAGTAGTTACGTTT 1049
| ||| | | || ||||||||||||| |||||||| |||| ||||| ||||||||
Sbjct 1012 TTATATTTAAGTAATATACAATGGGAGTAGTTTATGCAATGAAAA-CAGTAATTACGTTT 1070
Query 1050 ACGATTTTCTTAGGAGGTTGGTTGTCCAACG-TTTCAACACCTTGCAGATTTATCGCCAG 1108
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1071 ACGATTTTCTTAGGAGGTTGGTTGTCCAACGGTTTCAACACCTTGCAGATTTATCGCCAG 1130
Query 1109 TGCCTTTCAAGGATTCTCGTTGGTTTTTCCCAACTTTTTGTGGCAAATCGTTGCTCTAAA 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 TGCCTTTCAAGGATTCTCGTTGGTTTTTCCCAACTTTTTGTGGCAAATCGTTGCTCTAAA 1190
Query 1169 GCTATCTAGTTTTGTGTTTTTGGTAAGGATTATTTCTCTTACATTTTGCTACGTTTTATG 1228
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 GCTATCTAGTTTTATGTTTTTGGTAAGGATTATTTCTCTTACATTTTGCTACGTTTTATG 1250
Query 1229 ATTAGGGTATAA 1240
|||||||||||
Sbjct 1251 TTTAGGGTATAA 1262
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60993662175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5