BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479750
Length=5418
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22380.2 | Symbols: TIC | time for coffee | chr3:7912905-791... 7387 0.0
> AT3G22380.2 | Symbols: TIC | time for coffee | chr3:7912905-7919510
FORWARD LENGTH=5487
Length=5487
Score = 7387 bits (4000), Expect = 0.0
Identities = 4662/4972 (94%), Gaps = 84/4972 (2%)
Strand=Plus/Plus
Query 1 GGAGGGCCAAGATTTTGTCTTGCTGGTATATAGTTG-ATCATGACCGTTGGATGAATTCA 59
||||||||||||||||||| |||||||||||| | ||| ||||||||||||| |||||
Sbjct 1 GGAGGGCCAAGATTTTGTCACGCTGGTATATAG-CGTATCGTGACCGTTGGATGTATTCA 59
Query 60 CACCGACGGTGAAGATTGAGAAAATGTTTTACGGCAGGAGATATGAGCCGTGGATTTATT 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CACCGACGGTGAAGATTGAGAAAATGTTTTACGGCAGGAGATATGAGCCGTGGATTTATT 119
Query 120 CGCTACTCTGCTTTTATGAGGAGCACAAATAAAGGAGATAATGGGAAGCAAGTagagaga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CGCTACTCTGCTTTTATGAGGAGCACAAATAAAGGAGATAATGGGAAGCAAGTAGAGAGA 179
Query 180 tagagga-a-agag--agataaagagagag-aaaaggggttgcgattttgggagaagaga 234
||||||| | |||| ||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 180 TAGAGGAGAGAGAGTTTGATAAAGAGAGAGAAAAAGGGGTTGCGA-TTTGGGAGAAGAGA 238
Query 235 aa-agag-gaagaagcatt--------ag-agaagacgatggatagaaatagagaagcta 283
|| |||| | ||||||||| || |||||| |||||||||||||||||||||||
Sbjct 239 AATAGAGAGGAGAAGCATTAGAGAAGAAGAAGAAGAAGATGGATAGAAATAGAGAAGCTA 298
Query 284 gaagagTACCTATGGCGGCTGCCGGAAATGGTCTTTCACGGCGGAGACATAGAGCCGGAA 343
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 299 GAAGAGTACCTATGGCGGCTGCCGGAAATGGTCTTTCCCGGCGGAGACATAGAGCCGGAA 358
Query 344 GTTTCAGAGATTCACCAGAGGAGGAAGGTCCGGTGGAGTTACCGGAGGCGGCGAGGTTGA 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GTTTCAGAGATTCACCAGAGGAGGAAGGTCCGGTGGAGTTACCGGAGGCGGCGAGGTTGA 418
Query 404 GAGATCGAGGAGGGAGTAATAAGAAGGATCGAGATCGGGAACGTGATagagacagagaga 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GAGATCGAGGAGGGAGTAATAAGAAGGATCGAGATCGGGAACGTGATAGAGACAGAGAGA 478
Query 464 gggaaagagaaagagatagggagagagaTCGGTTAAATAGCCGGAGTAAACGGAGAAGAG 523
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 479 GGGAAAGAGAAAGAGATAGGGAGAGAGATCGGTTAAATAGCCGGAGTAAACGGCGGAGAG 538
Query 524 GAGAACGATTAATGATGGTTCACGGTAATTTAGACGACGGTGGTGACGATAGCTCTGAAG 583
||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||
Sbjct 539 GAGAACGCTTAATGATGGTTCACGGTAATCTAGACGACGGTGGCGACGATAGCTCGGAAG 598
Query 584 AGAGTGTTAACGACGATGAAGAATATGACGACGGAGGAGCTGTAGGACCACCGTCTTCGT 643
||||||| ||||||||||||||||||||||||||| | | |||||||||||| |||||||
Sbjct 599 AGAGTGTCAACGACGATGAAGAATATGACGACGGA-G-G-TGTAGGACCACCTTCTTCGT 655
Query 644 TGAAGATGCTTCCTCCGACGAGTAATAATATCTCCGCCGCATCGTTTTCATCGTCTCTTT 703
|||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |
Sbjct 656 TGAAGATGCTTCCTCCGACGAGCAATAATATCTCAGCTGCATCGTTTTCATCGTCTCTAT 715
Query 704 CAAATCATCACAACGGTGGTAGCGGTAATCT---TCATCACCATCACAACCATC-ATAAT 759
|||||||||||||||| |||||||||||||| ||| |||||||||| ||| | | |||
Sbjct 716 CAAATCATCACAACGGAGGTAGCGGTAATCTCCATCACCACCATCACAGCCA-CAACAAT 774
Query 760 AACCATCAGAGGAAG---AATTTTCCGCCGACGAAAGTTTTCAGATCGTCTCCTTCTCTG 816
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 775 AACCATCAGAGGAAGAATAATTTTCCGCCGACGAAAGTTTTCAGATCGTCTCCTTCTCCG 834
Query 817 GCGCCGGTTTCACCTCTAGTCTCGACGTGGAAAGCCGCTGACGAAATGATCGGTGTTTCG 876
|||||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 835 GCGCCGGTATCACCTCTTGTCTCGACGTGGAAAGCCGCCGACGAGATGATCGGTGTTTCG 894
Query 877 GTTCCTAGAAAAGCTCGGTCAGCTTGTACGAAGAGACCTCATGAATCATGGTCATCAAGT 936
||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct 895 GTTCCTAGAAAAGCTCGGTCAGCGTGTACGAAGAGACCTCATGAATCATGGGCGTCAAGT 954
Query 937 ACTACCGGAGGTGGTGTTTTTGCTTCCGGTGAACAAATCCACCGCCAAATATCATCAACG 996
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 955 ACTACCGGAGGTGGTGTTTTTGCTTCCGGTGAACAAATCCATCGGCAAATATCATCAACG 1014
Query 997 TCTCCAGCTAATAGAGTTAGTCCTGCTTCAATTCTAGCATCTCCGTCTCCTCCAGCTCCT 1056
||||||||||||||||||||||| ||||| ||| ||||||||||||||||||| ||||||
Sbjct 1015 TCTCCAGCTAATAGAGTTAGTCCGGCTTCGATTTTAGCATCTCCGTCTCCTCCTGCTCCT 1074
Query 1057 ACATCTCCTTCTTCATCAAGCATTTCAGTCCGGAAAAAATTGTCGTCGGGAACAAAACAG 1116
|| ||||||||||||||||||||||| ||| ||||||||||| ||||||| || ||||||
Sbjct 1075 ACGTCTCCTTCTTCATCAAGCATTTCCGTCAGGAAAAAATTGCCGTCGGGGACGAAACAG 1134
Query 1117 AAGACGTTACCGCCGAAATCATCATCGTGTAAGTTATCATCGTCGGTGGCTGTACAAGAC 1176
||| ||||||||||||| ||||||||| |||||||||||||| | |||||||||||||||
Sbjct 1135 AAGCCGTTACCGCCGAAGTCATCATCGAGTAAGTTATCATCGCCAGTGGCTGTACAAGAC 1194
Query 1177 GAGATCGAGATCGAGATTGCAGAAGTGTTGTACGGTATGATGAGGATGCCTTTAGCTACC 1236
|||||||||||||||||||||||||||||||| ||||||||||||||||| || | ||
Sbjct 1195 GAGATCGAGATCGAGATTGCAGAAGTGTTGTATGGTATGATGAGGATGCC-TT--CCACA 1251
Query 1237 TCAAAACAAGAATCCGCCGGTAACGATATGACGGAGGCAGCGAAATCAACAGTAGAAGTC 1296
|||||||||||| | |||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1252 TCAAAACAAGAAGCAGCCGGTAACGATTTGACGGAGGCAGCGAAATCAACTGTAGAAGTC 1311
Query 1297 AAATCTAGAGTATCTTCACCGATCTCAAATCCTCAGACTCTTCCTCAATCCTCCATCACA 1356
|||||| |||| |||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1312 AAATCTCGAGTCTCTTCACCGATCTCAAATCCTCAGACTCTTCCTCAATCATCTATCACA 1371
Query 1357 CTAGCTACAAATTCTAGCTCTTCTAATGTTTCAGCCATTGCTCCTAAAAGAAAGAAGCCA 1416
|||||| ||||||||||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct 1372 CTAGCTGCAAATTCTAGCTCCTCTAATGTTTCAGCCATCGCTCCTAAGAGAAAGAAGCCG 1431
Query 1417 AGACATGTCAAATACGAAGATGATAACAGTTCTCGCATCACTACAATCAAATCCGAAGCC 1476
||||||||||| |||||||| ||||||||||| ||| |||||||||||||||||||||||
Sbjct 1432 AGACATGTCAAGTACGAAGACGATAACAGTTCACGCGTCACTACAATCAAATCCGAAGCC 1491
Query 1477 GAAGCTCCTTCAAAAAATCAAGTTCCGTTTGGTGATCAGCTAAAGAGCTCAGGATCCGGC 1536
|||||||||||||||| |||||||||||| || |||| |||||||||||||||||||||
Sbjct 1492 GAAGCTCCTTCAAAAAGTCAAGTTCCGTTCAGTAATCAACTAAAGAGCTCAGGATCCGGC 1551
Query 1537 GAAGGAAACAGCTCTGTATTGGATTCGATCATTCCACAGACGAGAGAAAGTAACGCTTCG 1596
|||||||||||||| ||||||||||| ||||| |||| |||||||||||| |||||||||
Sbjct 1552 GAAGGAAACAGCTCCGTATTGGATTCTATCATACCACTGACGAGAGAAAGCAACGCTTCG 1611
Query 1597 TTAGATTCGAGATCAGCTGAGAAAAAAGAGAACAATCTGTCGAAAGATGAAACGATATTG 1656
||||| | || | ||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 1612 TTAGA-T-----TC-G--GAGAAAAAAGAGAACAATCTGTCAAAAGACGAAACAATATTG 1662
Query 1657 CCGAAAGTGGAATCTTCTTCAGGATTTAGATCCGATGGTGATGGAGCTAAATTGAGTTCG 1716
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1663 CCGAAAGTGGAATCTTCTTCAGGATTTAGATCCGATGGTGAAGGAGCTAAATCGAGTTCG 1722
Query 1717 CCGGAAAAAGCGAAGTTTGAGATAGATCTGATGGCGCCACCGCCGGTGAGATCATCGTCG 1776
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1723 CCGGAAAAAGAGAAGTTTGAGATAGATCTGATGGCGCCACCGCCGGTGAGATCGTCGTCG 1782
Query 1777 GAGAGAGGCGGAGAGATGATGGAATGTGTGGCAGCAGAAGCTAAACCTAAAGTCACGGAA 1836
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1783 GAGAGAGGCGGAGAGATGATGGAATGTGTGGCGGCAGAAGCTAAACCTAAAGTCACGGAA 1842
Query 1837 GTGGAAACGGAAGCAAAGCCTCTGCTCAAGGAAGATAGAGGTGAAGCGGCGATTCATGAT 1896
|||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||
Sbjct 1843 GTGGAAACGGAAGCAAAGCCTCTGCTTAAGGAAGATAGAAGTGATCCGGCGATTCATGAT 1902
Query 1897 TCTCAGGAGAAGAAGAGACCTAGAACGG-TGGTAGAAGCTGAACACCATAAGTATGAGAG 1955
||||||||||||||||||||||||| || || | ||||||||||||||||||| ||||||
Sbjct 1903 TCTCAGGAGAAGAAGAGACCTAGAATGGTTGCT-GAAGCTGAACACCATAAGTTTGAGAG 1961
Query 1956 GAATTGTGAACTTAAACTCGACTTGGATAAATCTGATCATGTTGGTTTAGTAAACAAGCA 2015
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1962 GAATTGTGAACTCAAACTCGACTTGGATAAATCTGATCATGTGGGTTTAGTAAACAAGCA 2021
Query 2016 TCATGTTCAGAAACAGCCACCGCAACAACAACTATCTGTTCCTGATAAAACAACTCAAGG 2075
|||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 2022 TCATGTTCAGAAACCGCCACCGCAACAGCAACTATCTGTTCCTGATAAAACTGCTCAAGC 2081
Query 2076 TAGCCATTTGCCTCTGCATATGTCTATGCCTGGCTGGCCTGGGGGCCTTCCTACAATGGG 2135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2082 TAGCCATTTGCCTCTGCATATGTCTATGCCTGGCTGGCCTGGGGGCCTTCCTACAATGGG 2141
Query 2136 ATATATGGCACCTACGCAAGGAGTTGTGCCTACGGATGCCAGTTCCTTATCTGCTGCAGC 2195
||| ||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 2142 ATACATGGCACCTACACAAGGAGTTGTGCCTACGGATACCAGTTCCTTATCAGCTGCAGC 2201
Query 2196 AATGCAGCCTCCACCGCATTTACTTTTTAATCAACCGAGGCCTAAGCGATGTGCTACACA 2255
||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 2202 AATGCAGCCTCCACCTCATTTACTTTTTAATCAACCAAGGCCGAAGCGATGTGCTACACA 2261
Query 2256 CTGCTACATTGCTCGGAATATTCAATCTCATCAGCAGTTCACAAAGATGAATCCTTTCTG 2315
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2262 CTGCTACATTGCTCGGAATATTCAATCTCATCAGCAATTCACAAAGATGAATCCTTTCTG 2321
Query 2316 GCCTGCAGCAGCAGGCTCAGCTCCATTGTATGGGACCAAGGCCTGCAATCTCAGTCTCAT 2375
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 2322 GCCTGCAGCAGCAGGCTCAGCTCCAATGTATGGGACCAAGGCCTGCAATCTCAGTCTTAT 2381
Query 2376 GCCTCCCACAGAACTTCAGGGGAGTGTTTTGGGAAGAAGTTCCAACCCTGTTCAAGATAA 2435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2382 GCCTCCCACAGAACTTCAGGGGAGTGTTTTGGGAAGAAGTTCCAACCCTGTTCAAGATAA 2441
Query 2436 GAATTCTCAATCTACGTCCAAAAGCTCAGATACAGCTCAGAGAAATCAATTATTGCTCCA 2495
|||||||||||||||||||||||||||||| |||||||| |||||||||||| |||| ||
Sbjct 2442 GAATTCTCAATCTACGTCCAAAAGCTCAGAGACAGCTCAAAGAAATCAATTAATGCTTCA 2501
Query 2496 ACAAGCTTTGCCTCCAGGAGCTGCTAATAACATCTTGCATGGTCCTACATTCATATTCCC 2555
||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||
Sbjct 2502 ACAAGCTTTGCCTCCAGGAGCAGCTAATAGCATCTTGCATGGTCCGACATTCATATTCCC 2561
Query 2556 CTTGGGCCAACAGCCTCATACAGCCGCTACAATAGCTGCTGCATCTGTCAGACCTCCTAA 2615
|||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||
Sbjct 2562 CTTGGGCCAACAGCCTCACGCTGCCGCTACAATAGCTGCCGCATCTGTCAGACCTCCTAA 2621
Query 2616 TAGTGGCATCACATCTTCTGGACCAACAGCTACTTCTAACTCCATGAATGGTTCTGTATC 2675
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 2622 TAGTGGCATCACATCTTCTGGACCAACAGCTACTTCTACCTCCATGAATGGTTCTGCATC 2681
Query 2676 CGCTACTCCAGCCGGTGCCCCAACAATGAGCTTCAGTTACCCGGCCATGCCGGGAAATGA 2735
||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 2682 AGCTACTCCAGCTGGTGCCCCAACAATGAGCTTCAGTTATCCTGCCATGCCGGGAAATGA 2741
Query 2736 AACGCAGTACCTGGCCATTTTACAGAATAACGGCTATCCATTTCCAGTTCCAGCACATGT 2795
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2742 AACGCAGTACCTGGCCATTTTGCAGAATAACGGCTATCCATTTCCAGTTCCAGCACATGT 2801
Query 2796 TGGGGCACCACCTGCTTATAGAGGAGCTCCTGGGCAGCCGATGCCATTTTTTAATGGTTC 2855
||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2802 TGGTGCACAACCTGCTTATAGAGGTGCTCCTGGGCAGCCGATGCCATTTTTTAATGGTTC 2861
Query 2856 ATTCTATTCCTCCCAAATGATCCAGCCTCCACATCATCAGCCACAGAAGCAGCAACAGCA 2915
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 2862 ATTCTATTCCTCCCAAATGATCCAGCCTCCACATCATCAGCCACAAAAGCAGCATCAGCA 2921
Query 2916 GCAGCAAACTGGTCAAATGCTGCAGAGCCATGCTCCTAACAACCAGAATGGGAGTGTTTC 2975
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 2922 GCAGCTAACTGGTCAAATGCTCCAGAGCCATGCTCCTAACAACCAGAATGGGAGTGCTTC 2981
Query 2976 CACTGGTTCCTCAGCAGCACAAAAGCATCTGCAGAACCAACAGTTGAGGCCACCGATTAA 3035
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2982 CACTGGTTCCTCAGCAGCTCAAAAGCATCTGCAGAACCAACAGTTGAGGCCACCGATTAA 3041
Query 3036 TCATGGGAACTCCCAAGGATTTCCAACTCATAAAGTCCAGTCTCAGCCTTTGAGTTTTCA 3095
|||||||||||| ||||||||||||||||||||||| || || |||||||||| ||||||
Sbjct 3042 TCATGGGAACTCTCAAGGATTTCCAACTCATAAAGTGCAATCGCAGCCTTTGAATTTTCA 3101
Query 3096 GCAGAGGCAGCAACCCAGAGAAAATGCAACTCAACATAGTGAGACTGTAGGGGAAGATAG 3155
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 3102 GCAGAGGCAGCAACCCAGAGAAAATGCTACTCAACATAGTGAGACTGTAGGGGAAGATAG 3161
Query 3156 CCCATCAACTGCTGATAGCCGGGGTTCTCGTTCCAATGTTGCCTATGGCCAGAACTATGG 3215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3162 CCCATCAACTGCTGATAGCCGGGGTTCTCGTTCCAATGTTGCCTATGGCCAGAACTATGG 3221
Query 3216 TATGCAAATGCAACCAACCAACTTGGGTTTGATGAGTTCACCAGCCCCTGGTGGTGGAGT 3275
|||||||||||||||||| |||||||||||||||||||| || |||||||||||||| ||
Sbjct 3222 TATGCAAATGCAACCAACTAACTTGGGTTTGATGAGTTCCCCTGCCCCTGGTGGTGGGGT 3281
Query 3276 GGTTGGATCTTCGAGCAGTCATGGTGAAAAGAAACCACAGCAGCAGGTTTCAAAGGCTGG 3335
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 3282 GGTTGGATCTTCGAGCAGTCATGGTGAAAAGAAATCACAGCAGCAGGTTTCAAAGGCTGG 3341
Query 3336 GGCAGAATCCTTCCAGTCACAGGGTTATGCTATGACTTTTGCGACATTCAATGGGGCTAA 3395
| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 3342 TGTAGAATCCTTCCAGTCACCGGGTTATGCTATGACTTTTGCGACGTTCAATGGGGCTAA 3401
Query 3396 CACTGCTCCTGCCCTAAACATGTCATCAATTGCTCAGAATCACGCTATGTTCCACAGCAT 3455
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3402 CACTGCTCCTACCCTAAACATGTCATCAATTGCTCAGAATCACGCTATGTTCCACAGCAT 3461
Query 3456 GCCCGAAGCAGCGAGGCAAGGTTATCAGATGATGGCAGTTGCTCAAGCAGCTCAACAAAA 3515
|||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 3462 GCCCGAAGCAGCAAGGCAAGGTTATCAGATGATGGC--T-GCTCAAGCAGCTCAACAAAA 3518
Query 3516 AATGAACTACAGTGCTTCAC-ATGAAGATGGAAAATCCGGGTCTATTGGTG---CTGCTA 3571
|||||||||| ||||||||| | |||||||||||||| ||||||||||||| ||||||
Sbjct 3519 AATGAACTACGGTGCTTCACTA-GAAGATGGAAAATCTGGGTCTATTGGTGGTGCTGCTA 3577
Query 3572 CTGCTAACA---CCCCAGAGGAACAAAGGAAGTCAGGAGGAGGAACAACAGGGAAAACGA 3628
||||||| | |||| |||||||||||||||||||||||||| ||| |||||||||||
Sbjct 3578 CTGCTAATAATACCCCTGAGGAACAAAGGAAGTCAGGAGGAGGGGCAATAGGGAAAACGA 3637
Query 3629 GTGGTGGGAATGGTGGGCAGTCTATTGCTTTCTCTAACAAACACGATTTAGCTGATGCAT 3688
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3638 GTGGTGGGAATGGTGGGCAGTCTATTGCTTTCTCTAACAAACAGGATTTAGCTGATGCAT 3697
Query 3689 CTGTTTCTGCTGTCACGAGTGGTAGCATCGTTGATAGCTCATCCCGTTTGCTCAACCTTG 3748
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3698 CTGTTTCTGCTGTCACGAGTGGTAGCATCGTTGATAGCTCATCCCGTTTACTCAACCTTG 3757
Query 3749 GTTCTGCTCTGCCACAGAGTTCGGGTTCTATGCCCCCGTCTCATCATCATcagcaactac 3808
||||||||||||||||||||||||||||| | ||| ||||||||||||| | |||||||
Sbjct 3758 GTTCTGCTCTGCCACAGAGTTCGGGTTCTTTACCCACGTCTCATCATCA--A-CAACTAC 3814
Query 3809 tacagcaacagcagcagcaacagcagcagcaTATGCAACGGAGTCAATCACAGCAACCTT 3868
|||| ||||||||||| | ||||| |||||||||||||||||| ||||||||||
Sbjct 3815 TACAACAACAGCAGCA--A-CAGCA------TATGCAACGGAGTCAATCGCAGCAACCTT 3865
Query 3869 ATACCACCATGTATCTCCAGAAGCAGCAACGGTATGCAACTTCAGTGGCTGCTTCTGCTG 3928
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3866 ATACCACCATGTACCTCCAGAAGCAGCAACGGTATGCAACTTCAGTGGCTGCTTCTGCTG 3925
Query 3929 CTAGAACCAAAGGGCCCGTGGCGAGTAACGGGAGTGGTTTCCCTGATCACAATATCATCA 3988
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||
Sbjct 3926 CCAGAACCAAAGGGCCCGTGGTGAGTAACGGGAGTGGTTTCCCTGATCACAATATGACCA 3985
Query 3989 CATCACCTGCGGCAACCACCAAGTTTGCAAATGCTAATGCTGGGTTCCCTCAAAACCTTG 4048
|||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 3986 CATCACCTGCGGGAACCACCAAGTTTGCAAATGCTAATTCAGGGTTCCCTCAAAACCTTG 4045
Query 4049 TCCAGTCGAGCAGCAATCAGGTTCAGTCTCCTCAGTGGAAAAACAATTCACCCAGGACAA 4108
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 4046 TCCAGTCGAGTAGCAATCAGGTTCAGTCTCAGCAGTGGAAAAACAATTCACCCAGGACAA 4105
Query 4109 CAAATACTACCCAAGCTCAGTCTCCTTCGATACTATCGCCATCATCATCAGTTGCTGCTG 4168
||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||
Sbjct 4106 CAAATACTACCCAAGCTCAGTCTCCTTCGATGTTGTCGCCATCAACATCAGTTGCTGCTG 4165
Query 4169 CATCGTCGCTAAGAAATGTCTCGCATAAACAGCAAAGCCGTCCCCAGCAATCGCAGATAT 4228
|||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 4166 CATCTTCGCTAAGAAACATCCCGCATAAACAGCAAAGCCGTCCCCAGCAATCGCAGATAT 4225
Query 4229 CTTTTGCAGCAAACTCGAAACCAATGGCTTCTGGTTCACCAATGCAGCAGGTGCAAGGAG 4288
|||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 4226 CTTTTGCAGCAAACTCAAAACCAATGACTTCTGGTTCACCAATGCAGCAGGTACAAGGAG 4285
Query 4289 GAACCAACCACCAGGCTCCGTCTCCACCAATGTTAGTTGGGTCGCCTTCGACGTCTTCCG 4348
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 4286 GAACCAACCACCAGGCTCCGTCTCCACCAATGTTAGTTGGGTCGCCTTCGACGTCGTCTG 4345
Query 4349 TCTCCAAAAACGCCAGCGGAAGCCCAAGAACAACTGCTTCCGCTTCCTCGGCAGCTAACA 4408
|||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 4346 TCTCCAAAAATGCCAGCGGAAGCCCAAGAACAACTGCTTCTGCTTCCTCGGCGGCAAACA 4405
Query 4409 A-GGCTGGACAAGCTTCCTCTACTACTCACTCATCATCTCAGCCGTCCAAGAACTTACAG 4467
| || ||||||||||||| | |||||||||||| ||||||||||||||||||||||||||
Sbjct 4406 AAGG-TGGACAAGCTTCCACAACTACTCACTCAGCATCTCAGCCGTCCAAGAACTTACAG 4464
Query 4468 TCTGCATCTGTGGCGTCATCTGCTGGTGGAAGGAACAATGGTCCTTCTGTTCTCGGAAAC 4527
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 4465 CCTGCATCTGCGGCGTCATCTGCTGGTGGAAGGAATAATGGTCCTTCTGTTCTCGGAAAC 4524
Query 4528 CCGACCACGAGCTCTGGATCCAAGTCCCAACAACAGCATCAGTTGCCAAAGCATGGGATG 4587
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||
Sbjct 4525 CCGACCACGAGCTCTGGATCCAAGTCGCAACAACAGCAGCAGTTGCCAAAGCATGGGCTG 4584
Query 4588 CAGCCGCAAGCACAGCTTTTCTTCTCTAATCCTTACATGCAAGCTCAACATCAACATCAA 4647
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 4585 CAGCCGCAAGCACAGCTATTCTTCTCTAATCCTTATATGCAAGCTCAACATCAACATCAA 4644
Query 4648 CAGCAACAGATCACTATATCTCCTTCTGGTGGGTATTACATCCAAAGACATCAGCAACAG 4707
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 4645 CAGCAACAGATCACCATATCTCCTTCTGGTGGGTATTACATCCAAAGACACCAGCAACAG 4704
Query 4708 TCAGGTTCAGCACCTGCTGCTGTAGCCACATGTCCTCCAGTCACGGGAGCCGTCAGCGCC 4767
||||||||||||||||||| | | ||| ||| | | |||||| |||| ||||
Sbjct 4705 TCAGGTTCAGCACCTGCTG-T-T--CCA---GTC----A--C--GGGAGCTGTCACCGCC 4749
Query 4768 ACTTCAGATCCAGCGAAAGCCATAGCGGCAGCAGCAGCAGCAAATAACATGAAAGGAGGA 4827
||||||||||||||||||||||||||||| ||| | ||||| |||||||||||||||||
Sbjct 4750 ACTTCAGATCCAGCGAAAGCCATAGCGGCTGCATCTGCAGCGAATAACATGAAAGGAGGT 4809
Query 4828 AGTGGTATGGGTAAAACTCAACAACATCAACTTGGGCCTCCAGGGTTCACGAATGTTCAC 4887
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 4810 GGTGGTATGGGTAAAACTCAACAACATCAGCTTGGGCCTCCAGGGTTCACTAATGTTCAC 4869
Query 4888 GCGGTTCCCTCTGCGGTTCAGGTTAAACCTGTGGATCAGAAGCAACAAGCGG 4939
|| ||| |||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 4870 GCTGTTTCCTCTGCGGTTCAGGTCAAACCCGTGGATCAGAAGCAACAGGCGG 4921
Score = 342 bits (185), Expect = 2e-92
Identities = 328/389 (84%), Gaps = 41/389 (11%)
Strand=Plus/Plus
Query 5017 GCTTGTGCTGGCGAGACGAAAGGACTTT-AAAGAGTCTGATGAAGAAAAGATGCAGACGG 5075
||||||||||||||||||||| |||||| |||||||||||||||| ||||| ||||||||
Sbjct 4921 GCTTGTGCTGGCGAGACGAAATGACTTTAAAAGAGTCTGATGAAG-AAAGAAGCAGACGG 4979
Query 5076 AACAGAACACCTTTAAAAAGGGATGACAAttttttt-GGAGTTGGGGGTGC-TTTTAAAA 5133
||||||||| || |||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 4980 AACAGAACAACTAAAAAAAGGGATGACAATTTTTTTCGGAGTTGGGGGTGCTTTTTAAAA 5039
Query 5134 GCATTGTGTACAATTTAGTGTTTATA-TATTCTGACAGGAGCCTACGGTTTCAATTCCAA 5192
||||||||||||| |||||||||||| ||||||||||||| |||||||| ||||||||||
Sbjct 5040 GCATTGTGTACAA-TTAGTGTTTATATTATTCTGACAGGAACCTACGGTGTCAATTCCAA 5098
Query 5193 AACCCaaaa---aaaaagaa-aaaaggaagaagc-aaaa--t-tta-aa-------aa-- 5234
|| | |||| ||||| || ||||||||||||| |||| | ||| || ||
Sbjct 5099 AA-CTAAAACCCAAAAAAAAGAAAAGGAAGAAGCAAAAACCTCTTAGAAGTTCTCTAATT 5157
Query 5235 T------TTTATTCATTCTTCTTGGGGAGGTTTGAGTTGTTTTGGT-GGTGATGATGTTA 5287
| |||||||||| |||||||||||||||||||| ||| | | |||| ||||||||
Sbjct 5158 TAAAAAATTTATTCATTTTTCTTGGGGAGGTTTGAGTT-TTT-GTTTGGTGGTGATGTTA 5215
Query 5288 TTAGGTAGG-AATCCAAAAGAAAATGGGAGAAGTAAAGAGTCGTAAGGCACA--GCAAGA 5344
|||||| || ||||||||||||||||||||||||||||||| || |||| |||| |
Sbjct 5216 ---GGTAGGGAA-CCAAAAGAAAATGGGAGAAGTAAAGAGTCGTTAGACACACAGCAATA 5271
Query 5345 GCCAACGAATGTACGTTCATAAGTTGGCC 5373
|| | |||| ||||||||||| | |||||
Sbjct 5272 GCGAGCGAACGTACGTTCATATGCTGGCC 5300
Score = 78.7 bits (42), Expect = 6e-13
Identities = 44/45 (98%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 5374 CAGTATGATGAATTTATGATTCGTTCTATTTTGTGTTTATGTTTT 5418
||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 5342 CAGTATGATGAATTTATGATTCGTTCTATTTTGTGTTTAAGTTTT 5386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 270449989713
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5