BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479753
Length=1468
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22410.1 | Symbols: | Sec14p-like phosphatidylinositol tran... 2194 0.0
> AT3G22410.1 | Symbols: | Sec14p-like phosphatidylinositol transfer
family protein | chr3:7933167-7935808 REVERSE LENGTH=1508
Length=1508
Score = 2194 bits (1188), Expect = 0.0
Identities = 1383/1475 (94%), Gaps = 21/1475 (1%)
Strand=Plus/Plus
Query 1 CAAACACACAAATACAATCATTGTCCCAGCTTCTTTCTCTCCCAAAAAATCCAATATTCt 60
||||||| ||||||||||||||||| ||||||||||||||||||||| |||| | | |||
Sbjct 1 CAAACACGCAAATACAATCATTGTCGCAGCTTCTTTCTCTCCCAAAACATCC-A-A-TCT 57
Query 61 tttttttttCC-TTCTTCATCACCATCCTCTGTTTCTTCGTTCTTTTAAAACAAAGCAGA 119
||||||||||| ||| || ||| |||||||||||||||||||||| |||| |||| ||||
Sbjct 58 TTTTTTTTTCCTTTC-TCTTCATCATCCTCTGTTTCTTCGTTCTTATAAACCAAAACAGA 116
Query 120 GAGATTTTAGAGATCTTCAT-CAAGAAAATGGGAAAGAAAGACGAGAAAGTCGAAGCTGT 178
||||||| |||||||||||| || |||||||| |||||||| |||||||||||||||||
Sbjct 117 GAGATTTAAGAGATCTTCATAAAAAAAAATGGGGAAGAAAGATGAGAAAGTCGAAGCTGT 176
Query 179 TCTTCGTTTGGTCAAGAAACAATCTCCACTCACTTTTAAACAAGAGAAGTTCTGTAACAG 238
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 TCTTCGCTTGGTCAAGAAACAATCTCCACTCACTTTTAAACAAGAGAAGTTCTGTAACAG 236
Query 239 AGAGTGTGTTGAGAGATTCTTGAAGGTTAAAGGAGATAATGTGAAAAAAGCTGCGAAACA 298
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 237 AGAGTGTGTTGAGAGATTCTTGAAGGTGAAAGGAGATAATGTGAAAAAAGCAGCGAAACA 296
Query 299 ACTCATTTCATGTCTTTCTTGGAGACAAAGCTTCGATATTGAGCGATTAGGAGCAGAGGA 358
||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 297 ACTCAGTTCATGTCTTTCTTGGAGACAAAATTTCGATATTGAGCGATTGGGAGCAGAGGA 356
Query 359 GTTCTCGACGGAGCTTAGCGATGGTGTAGCTTACATCTCCGGTCACGACGGAGAATCAAG 418
|||||||||||| |||||||| |||||||||||||||||||| |||||| ||||||||||
Sbjct 357 GTTCTCGACGGAACTTAGCGACGGTGTAGCTTACATCTCCGGCCACGACAGAGAATCAAG 416
Query 419 ACCTGTTATTATTTTCCGTTTTAAGCATGATTATCAGAAGCTGCGTACCCAAAAACAATT 478
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 417 ACCCGTTATTATTTTCCGTTTTAAGCATGATTATCAGAAGCTGCATACCCAAAAACAATT 476
Query 479 TACGCGTTTGGTGGCGTTCACGATTGAGACTGCGATTTCAAGCATGTCCAGAAACGCGGA 538
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 477 TACGCGTTTGGTAGCGTTCACGATTGAGACTGCGATTTCAAGCATGTCCAGAAACACGGA 536
Query 539 ACAGAGCTTTGTTCTTCTCTTCGATGCAAGCTTTTTCAGATCATCCTCTGCATTTGTGAA 598
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 537 ACAGAGCTTTGTTCTTCTCTTTGATGCAAGCTTTTTCAGATCATCCTCTGCATTTGCGAA 596
Query 599 TTTGCTTTTGGCGACCCTAAAAATCATCGCAGATAATTACCCATGCCGACTTGACAAAGC 658
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 597 TTTGCTTTTGGCGACCCTAAAAATCATCGCAGATAATTACCCATGCCGACTTTACAAAGC 656
Query 659 CTTTATCATCGACCCTCCCTCTTATTTCTCTTACCTTTGGAAGGGTGTTCGTCCTTTTGT 718
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 657 CTTTATCATCGACCCTCCCTCTTTTTTCTCTTACCTTTGGAAGGGTGTTCGTCCTTTTGT 716
Query 719 GGAGCTCTCAACGGTCACGATGATAGTGTCGTCTCTAGACTTCGACGAAAGGCTAGATAT 778
|||||||||||||| |||||||||| ||||||||||||||| ||||||| |||||||||
Sbjct 717 GGAGCTCTCAACGGCCACGATGATACTGTCGTCTCTAGACTACGACGAACCGCTAGATAT 776
Query 779 CAGCCACGTGTCGTCAAATCCTCGATCAGCATCTTTAAGATTCGACGCATCGTCGATTAA 838
|| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 777 CACCCACGTGTCATCAAATCCTCGATCAACATCTTTAAGATTCGACGCATCGTCGATTAA 836
Query 839 ATCAACGGCCACGATTGGTTCAGCTTCTTCAAGATTCGCTTTCACCGTCTCTCAAAACTC 898
|||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 837 ATCAACGGCCTCGATTGGTTCAGCTTCTTCAAGATTCGCTTTCACAGTCTCTCAGAACTC 896
Query 899 CTTGAAGCCGTGGTATCTTTCATTCACCGACACGTCACCTTATAACCCCGCCGTCTCCTC 958
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 897 GTTGAAGCCGTGGTATCTTTCCTTCACCGACACGTCACCTTATAACCCCGCCGTCTCATC 956
Query 959 ATCCACCGCCGCTCAAGTTTCTCCTCTCAGCGCACGGTCGCTATATTTCGCGTCTCCGGC 1018
||| |||| |||| |||||||||||||| ||||||||| || ||||||||||||||
Sbjct 957 CTCCGCCGCTGCTCCTGTTTCTCCTCTCAGTGCACGGTCGTTACCCTTCGCGTCTCCGGC 1016
Query 1019 GGCGCGTGGTTTCAAAGAAGCGAAACCAGCTGCATGCAGAAAGAGTTTGTTTCCATCTAC 1078
|| ||||||||||||||| ||||||||||| ||||||||||||||| |||||||||| ||
Sbjct 1017 GGTGCGTGGTTTCAAAGACGCGAAACCAGCCGCATGCAGAAAGAGTCTGTTTCCATCGAC 1076
Query 1079 GCCGTTGCCGGAGAAGACAAAGGCGGTTTCGTACCGGAAAACTCCACGTCCTTCGTTCTT 1138
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1077 GCCGTTGCCGGAGAAGACAAAGACGGTTTCGTATCGGAAAACTCCACGTCCTTCGTTCTT 1136
Query 1139 TCAGTCGCCGGCGATGTTCTTTCG-CAGGGAGAATAATGTCGGTGGAGGAGGCGAGAAGT 1197
|||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||
Sbjct 1137 TCAGTCGCCGGCGATGTTCTTTCGTC-GGGAGAACAATGTCGGTGGAGGAGGCGAGAAGT 1195
Query 1198 CACGTGAAGCGTTTGTACCGTATCTGAAGTTTTACCGGAGACCGTACGATGAGACTGCGT 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 CACGTGAAGCGTTTGTACCGTATCTGAAGTTTTACCGGAGACCGTACGATGAGACTGCGT 1255
Query 1258 ATAGGTCTAAGCTGCGTGGTCCAGGTGGATTTGTGTCGGTCGTGTCTTCGCACAGGAGAT 1317
||||||||||| | ||||||||| |||||||| |||||||||||||||| ||||| ||||
Sbjct 1256 ATAGGTCTAAGTTACGTGGTCCACGTGGATTTCTGTCGGTCGTGTCTTCTCACAGAAGAT 1315
Query 1318 CTCGCCACGTGTCTTTATCTCAACGGTTCTGATTTAA-AAGACGAGATTTGGGGAACGAG 1376
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1316 CTCGCCACGTGTCTTTATCTCAACGGTTCTGATTTAACAA-ACGAGATTTGGGGAACGAG 1374
Query 1377 TA--TATAATTAGAAGATAATCAATCAATCACATTGATCTGTTCCAAATACTCTTTTT-C 1433
|| ||||||||||||||||||| || | | |||||||||||||||| |||||| |
Sbjct 1375 TACATATAATTAGAAGATAATCA--CA-T----T-GATCTGTTCCAAATACGCTTTTTTC 1426
Query 1434 TAGACTTGCATGTCTATTACGGTGATATTAGGCTA 1468
|||||||||||||||||||||||||||||||||||
Sbjct 1427 TAGACTTGCATGTCTATTACGGTGATATTAGGCTA 1461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72389185890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5