BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg479754

Length=372
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G22415.1 | Symbols:  | unknown protein; Has 35333 Blast hits...   579    8e-165


> AT3G22415.1 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:7941014-7941564 
FORWARD LENGTH=382
Length=382

 Score =  579 bits (313),  Expect = 8e-165
 Identities = 355/375 (95%), Gaps = 4/375 (1%)
 Strand=Plus/Plus

Query  1    ATTTGCAAGAGCTAAGGCATTGTATAAGAAATGGGGTGGCTCCATTCCTTCTTCTCTCCT  60
            ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct  1    ATTTGCAAGAGCTAAGGCATTGTATAAGAAATGGGATGGCTCCATTCTTTCTTCTCTCCT  60

Query  61   TTGAAGAAACTATGGTTTAGCGTCAATTCTGCTCAAAAGAAGAGAAGAGGGATATACATA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TTGAAGAAACTATGGTTTAGCGTCAATTCTGCTCAAAAGAAGAGAAGAGGGATATACATA  120

Query  121  TTATATGAGGACGTCAAGTCATGTCCATACGAAGATGTGCAAGTTTTGTGGTCTATACTC  180
            ||||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||||| 
Sbjct  121  TTATACGAGGACGTGAAGTCATGCCCATACGAAGATGTGCATGTTTTGTGGTCTATACTT  180

Query  181  GTGGAGTCTCACCCACATACTTTGCAACTCAAACAATGATAAATCCATTTCATTACTCTC  240
            ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct  181  GTGGAGTCTCACCCACACACTTTGCAAATCAAACAATGATAAATCCATTTCATTACTCTC  240

Query  241  TTTTTGGTTCAGAGAGTTCATACTTCGAATGATCATGCTCGAGGTCGAAACGAAGAAGA-  299
            |||||||||||||| ||||||||  |||||| |||||||||||||| |||||||||||| 
Sbjct  241  TTTTTGGTTCAGAGGGTTCATACACCGAATGTTCATGCTCGAGGTCAAAACGAAGAAGAT  300

Query  300  AATTTCTTAATGGCATGATTCATATATCTGTTTTCTCTCCTCACTTAATGTACATATAAT  359
            |||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct  301  AATT-CTTAATGGCATGATTCATATATCTGTTTTCTCTCCTCACGTACTGTACATATAAT  359

Query  360  ATAAA--CACAGAGA  372
            |||||  ||||||||
Sbjct  360  ATAAATACACAGAGA  374



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17493176652


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5