BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479759
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22425.2 | Symbols: IGPD | imidazoleglycerol-phosphate dehyd... 1428 0.0
AT4G14910.2 | Symbols: HISN5B | HISTIDINE BIOSYNTHESIS 5B | chr... 708 0.0
> AT3G22425.2 | Symbols: IGPD | imidazoleglycerol-phosphate dehydratase
| chr3:7951055-7953223 FORWARD LENGTH=1238
Length=1238
Score = 1428 bits (773), Expect = 0.0
Identities = 957/1043 (92%), Gaps = 23/1043 (2%)
Strand=Plus/Plus
Query 1 AGGAGAATCAAAGCGTCGTCAGTCTTCTTCCTTCCGCTGCCAACAAAATGGAGCTGTCGT 60
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 11 AGGAGAATCAAAGCGTCGTC--TCTTGTTCCTTCCGCTGCCAACAAAATGGAGCTGTCGT 68
Query 61 CTGCATCCGCCATATTTGGCCACTCCTCCTCCGCCGCTCAGCTTCTCAGACCTAAGCTCG 120
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 CTGCGTCCGCCATATTAAGCCACTCCTCCTCCGCCGCTCAGCTTCTCAGACCTAAGCTCG 128
Query 121 GGTTTATAGATTTACTTCCTCGTCGAGCAATAATCGTGTC-T-T-CTGCTTC-T--ATTC 174
||||||| ||||| |||||||||||||| || ||||| || | | || |||| | |||
Sbjct 129 GGTTTATTGATTTGCTTCCTCGTCGAGCGATGATCGTTTCTTCTCCTTCTTCTTCGCTTC 188
Query 175 CTCGATTTTTGCGGATGGAATCTCAATCTC-CCATT--AAAAACGTTTCTCAGGCTACTT 231
|||||||||||||||||||||||||||||| | || || | | |||| ||| ||
Sbjct 189 CTCGATTTTTGCGGATGGAATCTCAATCTCAGC-TTCGCCAATC-TATCTCTTGCT-CTG 245
Query 232 CTGCTTCTTCTTCCTCTATCGAATTAGCTCGAATTGGAGAAGTAAAGAGAGTAACAAAGG 291
|| |||||||||| ||||| | ||||| | ||||||||||||||||||||||||||||||
Sbjct 246 CTTCTTCTTCTTCTTCTATGGCATTAGGTAGAATTGGAGAAGTAAAGAGAGTAACAAAGG 305
Query 292 AAACGAATGTTTCAGTGAAGATTAATTTGGATGGTACTGGAGTTGCAGATAGTTCTACTG 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 306 AAACGAATGTTTCAGTGAAGATTAATTTGGATGGTACTGGAGTTGCAGATAGTTCTAGTG 365
Query 352 GAATTCCTTTTCTTGACCATATGTTAGATCAACTTGCTTCACATGGCTTGTTTGATGTGC 411
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 366 GAATTCCTTTCCTTGACCATATGTTAGATCAACTTGCTTCGCATGGCTTGTTTGATGTGC 425
Query 412 ACGTTAGAGCTACTGGTGATGTTCACATTGATGATCATCACACTAATGAAGATATAGCTC 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 ACGTTAGAGCTACTGGTGATGTTCACATTGATGATCATCACACTAATGAAGATATAGCTC 485
Query 472 TTGCCATTGGAACAGCTCTTTTAAAGGCCCTTGGTGAGCGTAAAGGGATTAACCGGTTTG 531
||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 486 TTGCCATTGGAACTGCTCTATTAAAGGCTCTTGGTGAGCGTAAAGGGATTAACCGGTTTG 545
Query 532 GTGACTTCACAGCTCCTTTAGATGAAGCGCTTATACATGTTTCCTTGGACTTGTCTGGTC 591
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 GTGACTTCACAGCTCCTCTAGATGAAGCGCTTATACATGTTTCCTTGGACTTGTCTGGTC 605
Query 592 GACCATATCTTGGTTACAACTTGGAGATTCCAACCCAGAGAGTTGGAACTTATGACACTC 651
|||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||
Sbjct 606 GACCATATCTTGGTTACAACTTGGAGATACCAACTCAGAGAGTTGGAACATATGATACTC 665
Query 652 AGTTGGTGGAGCACTTCTTCCAGTCGTTGGTGAATACTTCTGGTATGACACTTCACATCC 711
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 666 AGTTGGTGGAGCACTTTTTCCAGTCGTTGGTGAATACTTCTGGTATGACTCTTCACATCC 725
Query 712 GGCAGCTTGCTGGTGAAAACTCTCATCACATAATAGAGGCGACCTTTAAGGCCTTTGCCA 771
||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 726 GGCAGCTCGCTGGTGAAAACTCTCATCACATAATAGAGGCGACGTTTAAGGCGTTTGCCA 785
Query 772 GGGCTCTACGACAAGCAACAGAGGA-TGATCCACGTCGTGGTGGGACGATACCAAGTTCA 830
| ||||||||||||||||||||| | ||||||||| ||||||||||| ||||||||||||
Sbjct 786 GAGCTCTACGACAAGCAACAGAG-ACTGATCCACGCCGTGGTGGGACAATACCAAGTTCA 844
Query 831 AAAGGAGTCTTGTCACGATCTTGAGAGCTCAGCAAACACACAAGACAGTTCCCAAATTCA 890
||||||||||| ||||| |||||| |||| | |||||||||||||||||||||| |||||
Sbjct 845 AAAGGAGTCTTATCACGGTCTTGAAAGCTAATCAAACACACAAGACAGTTCCCAGATTCA 904
Query 891 CACTTCATTGTCGAGTTCCTGAACCATCGTCGATTTTCTTATGTTGCCAAATGCCAAGCC 950
|||||||| ||||||||| ||| |||||||| ||| ||||||| | ||||||||||||||
Sbjct 905 CACTTCATCGTCGAGTTCATGAGCCATCGTCAATTCTCTTATGGTACCAAATGCCAAGCC 964
Query 951 TGTTGGATCTTACTGTTAC-TT---TG-CAGAATCGCAAAGAGCAAAATGTGAAAATAGA 1005
||||||||||| ||||| | || | ||||| | ||||||||||||||||||||||||
Sbjct 965 TGTTGGATCTTGCTGTTCCATTCCATTACAGAAGCACAAAGAGCAAAATGTGAAAATAGA 1024
Query 1006 GT-GAAGATCACACAGTTCAGAA 1027
| || |||||||||||||||||
Sbjct 1025 TTAGA-GATCACACAGTTCAGAA 1046
> AT4G14910.2 | Symbols: HISN5B | HISTIDINE BIOSYNTHESIS 5B | chr4:8528167-8530114
REVERSE LENGTH=1276
Length=1276
Score = 708 bits (383), Expect = 0.0
Identities = 517/582 (89%), Gaps = 8/582 (1%)
Strand=Plus/Plus
Query 249 ATCGAATTAGCTCGAATTGGAGAAGTAAAGAGAGTAACAAAGGAAACGAATGTTTCAGTG 308
||||||| ||||||||| || ||||| ||||||| |||||||||||| ||||| ||||||
Sbjct 223 ATCGAATCAGCTCGAATAGGTGAAGTGAAGAGAGAAACAAAGGAAACAAATGTATCAGTG 282
Query 309 AAGATTAATTTGGATGGTAC-TGGAGTTGCAGATAGTTCTACTGGAATTCCTTTTCTTGA 367
|||||||||||||||||| | ||||||| ||||||| || |||||||| ||||| |||||
Sbjct 283 AAGATTAATTTGGATGGT-CATGGAGTTTCAGATAGCTCCACTGGAATCCCTTTCCTTGA 341
Query 368 CCATATGTTAGATCAACTTGCTTCACATGGCTTGTTTGATGTGCACGTTAGAGCTACTGG 427
||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 342 TCATATGTTAGATCAACTTGCTTCACATGGCTTGTTCGATGTACACGTAAGAGCTACTGG 401
Query 428 TGATGTTCACATTGATGATCATCACACTAATGAAGATATAGCTCTTGCCATTGGAACAGC 487
|||| |||||||||||||||||| |||||||||||| | ||||||||||||||||| ||
Sbjct 402 TGATACTCACATTGATGATCATCATACTAATGAAGATGTTGCTCTTGCCATTGGAACTGC 461
Query 488 TCTT-TTAAAGGCCCTTGGTGAGCGTAAAGGGATTAACCGGTTTGGTGACTTCACAGCTC 546
| || |||||||| ||||| || || ||||||||||| || ||||| || || |||||||
Sbjct 462 T-TTGTTAAAGGCACTTGGGGAACGGAAAGGGATTAATCGTTTTGGCGATTTTACAGCTC 520
Query 547 CT-TTAGATGAAGCGCTTATACATGTTTCCTTGGA-CTTGTCTGGTCGACCATATCTTGG 604
|| || |||||||| || |||||||||||| |||| || |||||| |||||||||||||
Sbjct 521 CTCTT-GATGAAGCACTCATACATGTTTCCCTGGATCTA-TCTGGTAGACCATATCTTGG 578
Query 605 TTACAACTTGGAGATTCCAACCCAGAGAGTTGGAACTTATGACACTCAGTTGGTGGAGCA 664
|||||||| ||||||||||| |||||||| ||||| || ||||||||||||||||| ||
Sbjct 579 ATACAACTTAGAGATTCCAACGCAGAGAGTAGGAACATACGACACTCAGTTGGTGGAACA 638
Query 665 CTTCTTCCAGTCGTTGGTGAATACTTCTGGTATGACACTTCACATCCGGCAGCTTGCTGG 724
|||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 639 CTTCTTCCAGTCATTGGTGAATACTTCTGGTATGACTCTTCACATCCGACAGCTTGCTGG 698
Query 725 TGAAAACTCTCATCACATAATAGAGGCGACCTTTAAGGCCTTTGCCAGGGCTCTACGACA 784
| ||||||| |||||||||||||| |||||||||||||||||||| || ||||| |||||
Sbjct 699 TAAAAACTCGCATCACATAATAGAAGCGACCTTTAAGGCCTTTGCAAGAGCTCTCCGACA 758
Query 785 AGCAACAGAGGATGATCCACGTCGTGGTGGGACGATACCAAG 826
|||||||||| ||||||||| || |||||||| ||||||||
Sbjct 759 AGCAACAGAGTCTGATCCACGCCGCGGTGGGACAATACCAAG 800
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51490000675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5