BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479760
Length=1164
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22430.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Domain of... 1133 0.0
> AT3G22430.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Domain
of unknown function XS (InterPro:IPR005380); BEST Arabidopsis
thaliana protein match is: XS domain-containing protein /
XS zinc finger domain-containing protein-related (TAIR:AT5G23570.1);
Has 565 Blast hits to 510 proteins in 121 species:
Archae - 2; Bacteria - 90; Metazoa - 191; Fungi - 32; Plants
- 51; Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink).
| chr3:7953260-7957884 FORWARD LENGTH=2007
Length=2007
Score = 1133 bits (613), Expect = 0.0
Identities = 885/1007 (88%), Gaps = 55/1007 (5%)
Strand=Plus/Plus
Query 33 AAAACCTTCCCTTTACGATTTTTCCATAGCAGACACAG----AT--TC--C---TT-CTC 80
||||||||||||||||||||| |||||||||||||||| || || | || |||
Sbjct 82 AAAACCTTCCCTTTACGATTTCTCCATAGCAGACACAGATTCATACTCTGCGAATTGCTC 141
Query 81 AAGGTAGAAGAAGCAGATTCACGATCCCAAAACCCC----AA-GGCCATTGAAGATGGTC 135
|||||||||||||||||||||||||||||| |||| || |||||||||||||||||
Sbjct 142 AAGGTAGAAGAAGCAGATTCACGATCCCAATTCCCCTATTAACGGCCATTGAAGATGGTC 201
Query 136 GGGAACAACAACAACAACGCCAAGTCATCGACGAACAAGCCTCCGGCAACTTCCGCT-CC 194
||| | |||||||||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct 202 GGG---AGCAACAACAACGCCAAGTCATCGACGAACAAGCCTCCAGCAACTTCC-ATCCC 257
Query 195 CACCGCTGCAGCTTCCTCTTCACAGAACCATAAATCTCATTG-GAATTCGACTAACAACG 253
||||||||||||||| |||||||||||||||||| ||| || |||||| ||||||||||
Sbjct 258 CACCGCTGCAGCTTCATCTTCACAGAACCATAAACCTC-GTGTGAATTCAACTAACAACG 316
Query 254 ATGGTGGAACCAGT---AAC-AC--CAAC-A-AA-AAAGAAAGCAAGCC---GACGACAG 301
||||||||| |||| ||| || |||| | || |||||||||||||| || || ||
Sbjct 317 ATGGTGGAATCAGTAACAACAACAACAACAACAAGAAAGAAAGCAAGCCGATGATGATAG 376
Query 302 GTGGCCAGAAAATCGCCGATAAGAAACTTCCGAAGCCTAATTTTTCTCCTAAACTAGCTC 361
||| |||||||| |||||||||||||| | |||||||||| |||||||| |||||||
Sbjct 377 GTGTCCAGAAAACCGCCGATAAGAAACCACTGAAGCCTAATCCATCTCCTAAGCTAGCTC 436
Query 362 CGATTCCGAAACAATCCAATCCTAATCATCCAAATCCAACAGCTCCATCATCTTCACGGC 421
|||| ||||||||||| ||||| ||||||| ||||| ||| | ||||||||||||||| |
Sbjct 437 CGATCCCGAAACAATCTAATCCGAATCATCAAAATCAAACGGGTCCATCATCTTCACGAC 496
Query 422 CAATGGCTCCGTTTCCTTTCCCTGATTCATCTGCGGCGCTAGGTCCTCCTCCTCCCCCGA 481
|||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||
Sbjct 497 CAATGGCTCCGTTTCCTTTCCCTGATTCATCTCCCGCGCTAGGTCCTCCTCCTCAACCGA 556
Query 482 CGTATGGATTTCATATGCTT-GAGCGGCGCACAATTGTTCTCGCTGATGGTAGTGTTCGT 540
| |||||||| |||||| || ||||| ||||||||||||||||||||||||||||| |||
Sbjct 557 CTTATGGATTCCATATG-TTAGAGCGTCGCACAATTGTTCTCGCTGATGGTAGTGTCCGT 615
Query 541 TCCTACTTCGCTCTTCCTCCTAATTACCA-GGATTTTCCTCCTCAGAGTCGACTAGGTGG 599
|||||||||||||||||||||||||| || |||||||||||||||||||||| ||| |||
Sbjct 616 TCCTACTTCGCTCTTCCTCCTAATTA-CATGGATTTTCCTCCTCAGAGTCGATTAGCTGG 674
Query 600 ACCGGAATTTGGTAGATTTCCTCCCTTTTACCCGGAAGAGTTTCGAGATCAGCGGATGAA 659
||||| |||||| ||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 675 ACCGGTATTTGGGAGATTCCCTCCTTTTTACCCGGAAGAGTTTCGAGATCAGCGGATGAA 734
Query 660 ACGGAAATATCCAGGTGAAGAAGAGATTGATAGGAGAGACGAGAGAGCTGAGATGCTGAG 719
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 735 ACGGAAGTATCCAGGTGAAGAAGAGATTGATAGGAGAGATGAGAGAGCTGAGATGATGAG 794
Query 720 ACAAAGACAGCACTTTATGCAGTATGCGAATCCTAATGATCAATCACTTATGGCTGGTAC 779
||| |||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 795 ACAGAGACAGCAGTTTATGCAGTATGCGAATCCTAATGATCACTCATTTATGGCTGGTAC 854
Query 780 GAGTAGTAGTCCGTTTCTTAGGGATGTTGGAGAAGATGGTAGAGCAGCTAAGCATATGCG 839
|||||| | | | ||||||||| |||| |||||| |||||||||||| |
Sbjct 855 GAGTAG--G---G------A----TGTTGGAGAGGATGTTAGAGCTGCTAAGCATATGAG 899
Query 840 GATAGGATCAAGTAGGCATGACAATGGAGGTCTATTGATTGACCAGGTTGCACTAAAGAA 899
| ||||||||||||||||||||||||||||| | | ||||||||||||| ||||||||
Sbjct 900 GGTAGGATCAAGTAGGCATGACAATGGAGGTTTCCAGGTTGACCAGGTTGCTCTAAAGAA 959
Query 900 ATCGTTTTTGAGTTTTGTTAAGCGAGTTTTCGAGGACCCGACAGAGAAGAAGAACTACTT 959
|||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 960 ATCGTTTTTGGGTTTTGTTAAGCGAGTTTTCGAGGATCCGATGGAGAAGAAGAACTACTT 1019
Query 960 GGAGAACGGGAGGAAAGGGCGGCTTCAGTGTCTCGTTTGTGGCAGGT 1006
|||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1020 GGAGAACGGGAGAAAAGGGCGGCTTCAGTGTCTCGTTTGTGGCAGGT 1066
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57128220210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5