BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479763
Length=936
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22450.1 | Symbols: | Ribosomal L18p/L5e family protein | c... 1347 0.0
> AT3G22450.1 | Symbols: | Ribosomal L18p/L5e family protein |
chr3:7962443-7963378 FORWARD LENGTH=936
Length=936
Score = 1347 bits (729), Expect = 0.0
Identities = 869/938 (93%), Gaps = 4/938 (0%)
Strand=Plus/Plus
Query 1 ATGGCTTTGATGGTTTTAAGGAGAAAGTGTATCCGTATGCCGGATATCACCTCTGTTTTT 60
||||||||||||||||| || ||||||||| ||||| |||| ||| | | ||| ||||||
Sbjct 1 ATGGCTTTGATGGTTTTGAGAAGAAAGTGTCTCCGTTTGCCAGATTTTATCTCCGTTTTT 60
Query 61 CGACCTGCACGGAATTGTTTCTCCTCGAGATTTTCCAACAGTGAAAGTGG-AAAGGATAC 119
|||||||||| | ||| |||||||||||||||||||||||||||||||| ||| | |||
Sbjct 61 CGACCTGCACCGCGTTGCTTCTCCTCGAGATTTTCCAACAGTGAAAGTGGTAAA-GTTAC 119
Query 120 AGTGGCTGGTTTGAGTGGTTGTGGTATAGAAACTGTGGATGATGATGCTTGGCATGTCTC 179
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 120 AGTGACTGGTTTGAGTGGTTGTGGTATAGAAACTGTGGATGATGATGTTTGGCATGTTTC 179
Query 180 ATCATCTTTATCTCAAGCTTGGAGACAGTTCCAAGCAGACACTGCAAAAAACTCTCCCGT 239
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATCATCTTTATCCCAAGCTTGGAGACAGTTCCAAGCAGACACTGCAAAAAACTCTCCCGT 239
Query 240 TACAATACAAGGAGTAAGAGAAACAATGCTCGATGATGAAGATCCTGATCATGATGAAAT 299
||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 240 TACAATACAAGGAGTAAGAGAAACAATACTCGATGATGAAGATCCCGATCACGATGAAAT 299
Query 300 CGATAATATGAGAATTCGCGGTGATCTTTTCTACAAGCTTGATCGAGGGTCAAAAGAATT 359
|||||| ||||||||||||||||||||||||| |||||| |||||||| |||||||||||
Sbjct 300 CGATAACATGAGAATTCGCGGTGATCTTTTCTTCAAGCTCGATCGAGGTTCAAAAGAATT 359
Query 360 CGAGGAATACAACTACGACTTCCACCGCaagaatcaacacaagaacgttaagagag-agc 418
||||||||||||||| ||||||||||||||||||||||||||||||| ||| | || |||
Sbjct 360 CGAGGAATACAACTATGACTTCCACCGCAAGAATCAACACAAGAACGCTAAAA-AGGAGC 418
Query 419 aaaaccaagaagaagaaacaacgatgaagaagaataataagaaggaagttcgtgaggaat 478
||||||||||||||||||||| ||| |||||| |||| ||||||||||||||||| ||||
Sbjct 419 AAAACCAAGAAGAAGAAACAAAGATAAAGAAGGATAACAAGAAGGAAGTTCGTGACGAAT 478
Query 479 acaagaagagaaACGACTCTTTTACCGGTGAAACAGATCATCCTAATGCAGCTGTGAGGA 538
||||||||||||| |||||||| || ||||| || ||||||||||||| |||||||| ||
Sbjct 479 ACAAGAAGAGAAATGACTCTTTCACAGGTGAGACGGATCATCCTAATGAAGCTGTGAAGA 538
Query 539 AGAGAGAAAGAACGTTTACGTTTAACCAACTCACGGCGCCTTTTCACTACCCGTTTTGCT 598
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 539 AGAGAGAAAGAACATTTACGTTTAACCAACTCACGGCGCCATTTCACTACCCGTTTTGCT 598
Query 599 TAGACATATACATCTCGAAGGAGTCTGTTCGAGCATGTGTGATCCACAGGGTGACTAGTA 658
||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 599 TAGACATATACATCTCGAAAGAGTCTGTACGAGCATGTGTGATTCACAGGGTGACTAGTA 658
Query 659 AAGTTGTCACTGTAGCTCATTCCATTTCGAAAGACATGAAATTCGATCTTGGTTCGACTA 718
| ||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||| |
Sbjct 659 AGGTTGTAACTGTGGCTCATTCGATTTCAAAAGACATGAAATTCGATCTTGGTTCGAGAA 718
Query 719 GAAACGCTACAGCTTGCGCTGCGGTTGGGGCAGTCCTTGCTCAAAGATGTTTGGAGGATG 778
|||||| | ||||||||||||||||||||||||| |||||||||||| ||||||| ||||
Sbjct 719 GAAACGTTGCAGCTTGCGCTGCGGTTGGGGCAGTTCTTGCTCAAAGAAGTTTGGAAGATG 778
Query 779 ATATACATGACGTTATATACACTCCTAGGAAAGGAGATAAAATCGAAGGTAAGCTTCAGG 838
| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 779 ACATACATGATGTTATATACACTCCTAGGAAAGGAGATAAAATTGAAGGTAAGCTTCAGG 838
Query 839 TTGTGCTTCAAGCTCTTATTGATAATGGTGTTAATGTTAAAGTGAAGCTAAAGCAAAGGA 898
| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 839 TCGTGCTTCAAGCTCTTATTGACAATGGTGTTAATGTTAAAGTGAAGCTTAAGCAGAGGA 898
Query 899 AACTCAAGAAGAAGACTAGTCATCTAATGATGGCCTAG 936
|||| |||||||||||||||||||||||||||||||||
Sbjct 899 AACTTAAGAAGAAGACTAGTCATCTAATGATGGCCTAG 936
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45763307917
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5