BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479765
Length=1940
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22470.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2593 0.0
AT1G12300.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1236 0.0
AT1G12775.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 1070 0.0
> AT3G22470.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:7965954-7967990 REVERSE LENGTH=2037
Length=2037
Score = 2593 bits (1404), Expect = 0.0
Identities = 1761/1931 (91%), Gaps = 33/1931 (2%)
Strand=Plus/Plus
Query 22 AAAAGCTTCGAACTTTACTCAGATTATTGATAAAGGTACTTTGAGAATTTCTTTATTACA 81
||||||||||||||||||||||||| |||| |||||||| ||||||||||||
Sbjct 95 AAAAGCTTCGAACTTTACTCAGATTCTTGAGAAAGGTAC---------TTCTTTATTACA 145
Query 82 CTATTCTTGTATCAGCGAAGCGAAAG-TTTCTTATAAAGAGAGATTGAGGAATGGGATTG 140
||||||| |||||| ||||||| ||| ||||||||||||||||||| |||||||||||||
Sbjct 146 CTATTCTAGTATCACCGAAGCG-AAGCTTTCTTATAAAGAGAGATTAAGGAATGGGATTG 204
Query 141 TTGATATTAAGGTTAATGAAGCTATTGATCTCTTCGAATCCATGATTCAATCTCGTCCTT 200
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 205 TTGATATTAAGGTTAATGATGCTATTGATCTCTTCGAATCCATGATTCAATCTCGTCCTT 264
Query 201 TACCAAGTCTC-ATTGATTTCAGTAAATTGTTTAGTGCTGTTGCTAGAAGGAAAGAATAT 259
|||| | || | || ||||||| || ||||| ||||||||||||||||| |||| | |||
Sbjct 265 TACCTACTC-CAATCGATTTCAATAGATTGTGTAGTGCTGTTGCTAGAACGAAACAGTAT 323
Query 260 GATTTAGTGTTAGGTTTCTGCAAGGAAATGGATTTGAATGGGATTGAACATAACATGTAT 319
||||||||||||||||||||||||| |||||| |||||||||||||| ||| ||||||||
Sbjct 324 GATTTAGTGTTAGGTTTCTGCAAGGGAATGGAGTTGAATGGGATTGAGCATGACATGTAT 383
Query 320 ACTATGAACATTATGATCAATTGCTTTTGTCGAAAAAGGAAACTTCTTTTCGCTTTTTCG 379
||||||| ||||||||||||||||| |||| |||||| ||||||||||||||| |||||
Sbjct 384 ACTATGACCATTATGATCAATTGCTATTGTAGAAAAAAGAAACTTCTTTTCGCATTTTCT 443
Query 380 GTTGTTGGGAGAGCTCT-GAAATTTGGGTTTGAGCCTAATACGATTACGTTTTCGACTTT 438
||| ||||||||||| | ||| |||||| ||||||| |||| || ||||||||||||||
Sbjct 444 GTTCTTGGGAGAGCT-TGGAAGCTTGGGTATGAGCCTGATACAATCACGTTTTCGACTTT 502
Query 439 GATTAACGGGTTTTGCCTCGAGGGTAGAGTTTCCGAAGCTGTGGCTTTAGTTGATCGGAT 498
| ||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||
Sbjct 503 GGTTAACGGGTTTTGCCTCGAGGGTAGAGTTTCTGAAGCGGTTGCGTTAGTTGATCGGAT 562
Query 499 GGTGGAAATGAAGGAAAGACCGAATGTTGTGACGGTTAACACGT-TGATCAATGGACTTT 557
||||||||||||| |||||||| || |||| || |||| ||| | |||||||||||||||
Sbjct 563 GGTGGAAATGAAGCAAAGACCGGATCTTGTAACCGTTAGCAC-TCTGATCAATGGACTTT 621
Query 558 GTCTTAAGGGTAGAGTGACTGAAGCTTTGGTTTTGATTGATAGGATGGTTGAATATGGGT 617
|||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
Sbjct 622 GTCTAAAGGGTAGAGTGTCTGAAGCTTTGGTTTTGATTGATAGGATGGTTGAGTATGGTT 681
Query 618 GTGAAGCTAATGAGATTACTTATGGACCGGTTTTCAATAGAATGTGTAAGTCAGGGAACA 677
| || || ||||| ||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 682 TTCAACCTGATGAGGTTACTTATGGACCGGTTTTGAATAGACTGTGTAAGTCAGGGAACT 741
Query 678 CTGCTTTGGCTTTGGATTTGCTTAGAAAGATGGAAGAAAGAAGTATCAAAGCTAGTGTAG 737
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
Sbjct 742 CTGCTTTGGCTTTGGATTTGTTTAGAAAGATGGAAGAAAGAAATATCAAAGCTAGTGTTG 801
Query 738 TTCAGTATAGTATTGTTATTGATAGTCTTTGTAAAGATGGGAACCTCGATGATGCGCTTA 797
|||||||||||||||||||||||||||||||||||||||||| | | || ||||||||||
Sbjct 802 TTCAGTATAGTATTGTTATTGATAGTCTTTGTAAAGATGGGAGCTTTGACGATGCGCTTA 861
Query 798 GTCTTTTTAATGAGATGGAGATGAAAGGGATCAAAGCAGATGTTGTTGCCTACAGTTCTA 857
| ||||| ||||||||||||||||||||||| ||||| ||||||||| | || ||||||
Sbjct 862 GCCTTTTCAATGAGATGGAGATGAAAGGGATTAAAGCTGATGTTGTTACGTATAGTTCTC 921
Query 858 TTATAGGAGGTCTTTGTAACGACGGTAGATGGGATGATGGTGCAAAGATGTTGAGGGAGA 917
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 922 TTATAGGAGGTCTTTGTAACGACGGTAAATGGGATGATGGTGCAAAGATGTTGAGGGAGA 981
Query 918 TGATCGGAAGGAATATTA-TCCCTAATGTTGTCACATTTAGTGCTTTGATTGATGTTTTT 976
|||| ||||||||||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct 982 TGATTGGAAGGAATATCATTCCC-GATGTTGTCACATTTAGTGCTTTGATTGATGTTTTT 1040
Query 977 GTGAAAGAGGGGAAGCTTTTAGAGGCTAAGGAGTTGTACAATGAAATGGTCGCACGAGGT 1036
|||||||||||||||||| |||||||||| |||||||||||||| ||| || || |||||
Sbjct 1041 GTGAAAGAGGGGAAGCTTCTAGAGGCTAAAGAGTTGTACAATGAGATGATCACAAGAGGT 1100
Query 1037 ATCGCTCCTGACACCATTACATATAGTTCCTTGATTGATGGGTTTTGCAAGGAGAATCGG 1096
|| |||||||||||||||||||||| ||| || |||||||||||||| ||||||||| |
Sbjct 1101 ATAGCTCCTGACACCATTACATATAATTCATTAATTGATGGGTTTTGTAAGGAGAAT-TG 1159
Query 1097 C-TAGGCGAGGCTAATCAGATGTTGGATCTGATGGTTAGC-AAGGGACGTGAACCTAATA 1154
| || ||||||||||||||||| ||||||||||||||| ||||| | |||||| | |
Sbjct 1160 CTTACATGAGGCTAATCAGATGTTTGATCTGATGGTTAGCAAAGGG-TGCGAACCTGACA 1218
Query 1155 TCGTGACTTATAGTATTCTCATAAATAGTTACTGCAAAGCTAAGAGAGTTGATAATGGTA 1214
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1219 TCGTGACTTATAGTATTCTCATAAATAGCTACTGCAAAGCTAAGAGAGTTGATGATGGTA 1278
Query 1215 TGAGAC-TTTTCTGTGAGATTTCTTCGAAAGGATTGGTTGCTGATACAGTCACTTATAAC 1273
|||||| ||||| ||||||||||||||||||||||| || || ||||| |||||||||||
Sbjct 1279 TGAGACTTTTTC-GTGAGATTTCTTCGAAAGGATTGATTCCTAATACAATCACTTATAAC 1337
Query 1274 ACTCTTGTCCAAGGGTTTTGTCAATCGGGAAAACTTAATGTTGCTAAAGAACTATTCCAA 1333
|||||||||| ||||||||||||||||||||||||||| | || |||||||| ||||||
Sbjct 1338 ACTCTTGTCCTAGGGTTTTGTCAATCGGGAAAACTTAACGCCGCCAAAGAACTCTTCCAA 1397
Query 1334 GAGATGGTTTCTCGTGGTGTGCCACCAAGTGTTGTAACTTATGGCATTTTGCTGGATGGT 1393
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1398 GAGATGGTTTCTCGTGGTGTGCCACCAAGTGTTGTAACTTATGGTATTTTGCTGGATGGT 1457
Query 1394 TTGTGTGACAATGGAGAACTACAA-AAAGCATTGGAGATATTTGAAAAAATGCAGAAGAG 1452
|||||||||||||| |||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 1458 TTGTGTGACAATGGTGAACTA-AATAAAGCATTGGAGATATTTGAGAAAATGCAGAAGAG 1516
Query 1453 TAGGATGATC-CTTGGTATTGGCATCTATAATATCATCATTCACGGGATGTGCAATGCTA 1511
|||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1517 TAGGATGA-CTCTTGGTATTGGTATCTATAATATCATCATTCACGGGATGTGCAATGCTA 1575
Query 1512 GTAAGGTCGATGATGCGTGGAGTTTGTTCTGTAGCCTCTCTGTCAAAGGAGTGAAACCTG 1571
|||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1576 GTAAGGTCGATGATGCTTGGAGTTTATTCTGTAGCCTCTCTGACAAAGGAGTGAAACCTG 1635
Query 1572 ATGTCTTGACATACAATGTAATGATTGGAGGACTATGTAAGAAAGGCTCGTTGTCTGAAG 1631
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1636 ATGTCGTGACATACAATGTAATGATTGGAGGACTATGTAAGAAAGGCTCGTTGTCTGAAG 1695
Query 1632 CCGATATGCTGTTTAGGAAAATGAAGGAGGATGGGTGTGCTCCG-AGTGATTGTACGTAC 1690
|||||||||||||||| ||||||||||||||||||||| ||||| | ||||| |||||||
Sbjct 1696 CCGATATGCTGTTTAGAAAAATGAAGGAGGATGGGTGTACTCCGGA-TGATTTTACGTAC 1754
Query 1691 AATATACTTATCAGGGCACATCTCGGAGGTAGTGGAGTAATCTCTTCAGTTGAACTCATC 1750
|| || ||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1755 AACATTCTTATCAGGGCACATCTTGGAGGTAGTGGTCTAATCTCTTCAGTTGAACTCATA 1814
Query 1751 GAAGAAATGAAGATGCGTGGGTTCGCTGCAGATGCTTCCACTATAAAGATGGTTGTTGTT 1810
|||||||||||| || |||||||| |||||||| ||||||| |||||||||||| ||| |
Sbjct 1815 GAAGAAATGAAGGTGTGTGGGTTCTCTGCAGATTCTTCCACCATAAAGATGGTTATTGAT 1874
Query 1811 ATGTTATCAGATGGTAGATTGGATAAAACCTTTTTGGATATGCTTTCTTGATTGTCTAAT 1870
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1875 ATGTTATCAGATCGTAGATTGGATAAAAGCTTTTTGGATATGCTTTCTTGATTGTCTAAT 1934
Query 1871 CTGAAATACAAGAGATAAATCCAATATTTTTGTTTGTAATTCCAAATCAACTAAA-TATT 1929
|||| ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||
Sbjct 1935 CTGATCTACAAGAGATAAAGAAAATATTTTTGTTTGTAATTCCAAATCA-CTAAAATATT 1993
Query 1930 GTACCAAGCTT 1940
|||||||||||
Sbjct 1994 GTACCAAGCTT 2004
> AT1G12300.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:4183066-4186124 REVERSE LENGTH=3059
Length=3059
Score = 1236 bits (669), Expect = 0.0
Identities = 1461/1835 (80%), Gaps = 87/1835 (5%)
Strand=Plus/Plus
Query 110 TCTTATAAAGAGAGATTGAGGAA-TGGGATTGTTGATATTAAGGTTA-ATGAAGCTATTG 167
||||||| ||||||||||| ||| |||| |||| |||||||||| | |||| |||||||
Sbjct 211 TCTTATAGAGAGAGATTGA-GAAGTGGGCTTGTCGATATTAAGG-CAGATGATGCTATTG 268
Query 168 ATCTCTT-CGAATCCATGATTCAATCTCGTCCT-TTACCAAGTCTCATTGATTTCAGTAA 225
|||| || || | ||||||||| ||||||||| || || | | | || ||||||||||
Sbjct 269 ATCTGTTCCG-AGACATGATTCACTCTCGTCCTCTT-CCCACTGTTATAGATTTCAGTAG 326
Query 226 ATTGTTTAGTGCTGTTGCTAGAAGGAAAGAATATGAT-TTAGTGTTAGGTTTCTGCAAGG 284
|||||||||||| |||| | || |||| | |||||| || ||||||| | ||||||||
Sbjct 327 ATTGTTTAGTGCCATTGCCAAAACGAAACAGTATGATCTT-GTGTTAGCTCTCTGCAAGC 385
Query 285 AAATGGATTTGAATGGG-ATTGAACATAACATGTATACTATGAACATTATGATCAATTGC 343
||||||| || || ||| || | |||||| | || ||| ||| |||||||| ||||||
Sbjct 386 AAATGGAATT-AAAGGGAATCGCGCATAACCTCTACACTCTGAGTATTATGATTAATTGC 444
Query 344 TTTTGTCGAAAAAGGAAACTTCT-TTTCGCTTTTTCGGTTGTTGGGAGAGCTC-TGAAAT 401
||||||||| | |||| ||| ||| |||||||| | | | |||| || || | |||
Sbjct 445 TTTTGTCGATGTCGTAAAC-TCTGTTTGGCTTTTTCTGCTATGGGGA-AGATCATTAAAC 502
Query 402 TTGGGTTTGAGCCTAATACGATTACGTTTTCGACTTTGATTAACGGGTTTTGCCTCGAGG 461
|||||| ||||||||| || || || ||||| ||||| || ||||| || || |||||||
Sbjct 503 TTGGGTATGAGCCTAACACTATCACATTTTCAACTTTAATCAACGGATTATGTCTCGAGG 562
Query 462 GTAGAGTTTCCGAAGCTGTGGCTTTAGTTGATCGGATGGTGGAAATGAAGGA-A-AGA-C 518
||||||||||||||||| ||| ||||||||||| ||||| |||||| ||| | | | |
Sbjct 563 GTAGAGTTTCCGAAGCTCTGGAATTAGTTGATCGAATGGTTGAAATG--GGACATAAACC 620
Query 519 CGAATGTTGTGACGGTTAACACGT-TGATCAATGGACTTTGTCTTAAG-GGTAGAGTGAC 576
|| || | | || ||||||| | || ||||||||||||||| | || |||| || | |
Sbjct 621 CG-ATCTCATAACTATTAACAC-TCTGGTCAATGGACTTTGTC-TCAGCGGTAAAGAGGC 677
Query 577 TGAAGCTTTGGTTTTGATTGATAGGATGGTTGAATATGGGTGTGAAGCTAATG-AGATTA 635
|||||| || ||||||| |||| ||||| |||||||| ||| || | |||| || |||
Sbjct 678 TGAAGCAATGCTTTTGATAGATAAAATGGTGGAATATGGCTGTCAACCCAATGCAG-TTA 736
Query 636 CTTATGGACCGGTTTTCAATAG-AATGTGTAAGTCAGG-GAACACTG-CTTTGGCTTTGG 692
| || ||||||||||| ||| | |||||||||||| || || |||| | || || |||
Sbjct 737 CCTACGGACCGGTTTTAAAT-GTAATGTGTAAGTCCGGCCAA-ACTGCCCTT-GCCATGG 793
Query 693 ATTTGCTTAGAAAGATGGAAGAAAGAAGTATCAAAGCTAG-TGTAGTTC-AGTATAGTAT 750
| ||||| ||||||||||||||||||| |||| ||||| | || || || | || |||||
Sbjct 794 AGTTGCTCAGAAAGATGGAAGAAAGAAATATC-AAGCTCGATGCAG-TCAAATACAGTAT 851
Query 751 TGTTATTGATAGTCTTTGTAAAGATGGGAACCTCGATGATGCGCTT-AGTCTTTTTAATG 809
| |||||| ||||||| ||| | |||| |||||| |||| || | ||||| ||||
Sbjct 852 CATCATTGATGGTCTTTGCAAACACGGGAGCCTCGACAATGC-ATTCAACCTTTTCAATG 910
Query 810 AGATGGAGATGAAAGGGATCA-AAGCAGATGTTGTTGCCTAC-A-GTTCTATTATAGGAG 866
| ||||| ||||||||||||| || || || || || ||||| | ||| | || || |
Sbjct 911 AAATGGAAATGAAAGGGATCACAA-CAAATATTATTACCTACAACATTC--TCATTGGCG 967
Query 867 GTC-TTTGTAACGAC-GGTAGATGGGATGATGGTGCAAAGATGTTGAGGGAGATGATCGG 924
| | ||||||| | | |||||||||||||||||||| ||| | |||||||| ||||||
Sbjct 968 G-CTTTTGTAATG-CTGGTAGATGGGATGATGGTGCCAAGTTATTGAGGGATATGATC-A 1024
Query 925 A-AGGAATATTATCCCTAATGTTGTCACATTTAGTGCTTTGATTGAT-GTTTTTGTGAAA 982
| ||||| || | ||| || ||||||||||| |||| |||||||||| | ||||||||||
Sbjct 1025 AGAGGAAAATCAACCCCAACGTTGTCACATTCAGTGTTTTGATTGATAG-TTTTGTGAAA 1083
Query 983 GAGGGGAAGCTTTTAGAGG-CTAAGGAGTTGTACAATGAAATGGTCGCA-CGAGGTATCG 1040
||||| |||||| ||||| | || || || |||| || ||| | || ||||| || |
Sbjct 1084 GAGGGAAAGCTTCGAGAGGCCGAA-GAACTGCACAAGGAGATGAT-ACATCGAGGCATAG 1141
Query 1041 CTCCTGACACCATTACATATAGTTCCTTGATTGATGGGTTTTGCAAGGAGAATCGGCTAG 1100
||||||| || || ||||| | ||| ||||| |||||||||||||||||||| | ||||
Sbjct 1142 CTCCTGATACTATCACATACACTTCTTTGATAGATGGGTTTTGCAAGGAGAACCACCTAG 1201
Query 1101 GCGAGGCTAATCAGATGTTGGATCTGATGGTTAGCAAGGGACGTGAACCTAATATC-GTG 1159
|||| || |||||| ||||||||||||||||||| ||| | || ||||||||| | |
Sbjct 1202 ATAAGGCCAACCAGATGGTGGATCTGATGGTTAGCAAAGGATGCGATCCTAATATCAG-G 1260
Query 1160 AC-TTATAGTATTCTCATAAATAGTTACTGCAAAGCTAAGAGAGTTGATAATGGTAT-GA 1217
|| || || ||| ||||||||| | || || || ||||| || |||| ||||| | ||
Sbjct 1261 ACGTT-TAATATCCTCATAAATGGATATTGTAAGGCTAATCGAATTGACGATGGTTTGGA 1319
Query 1218 GACTTTTCTGTGAGATTTCTTCGAAAGGATTGGTTGCTGATACAGTCACTTATAACACTC 1277
||| ||| | | || |||| || |||| ||||||| |||||||| |||||||||||||
Sbjct 1320 -ACTCTTCCGCAAAATGTCTTTGAGAGGAGTGGTTGCAGATACAGTTACTTATAACACTC 1378
Query 1278 TTGTCCAAGGGTTTTGTCAATCGGGAAAACTTAATGTTGCTAAAGAACTATTCCAAGAGA 1337
|| ||||||| |||||| ||| |||||||||||||||||| |||||||| ||||||||||
Sbjct 1379 TTATCCAAGGATTTTGTGAATTGGGAAAACTTAATGTTGCCAAAGAACTCTTCCAAGAGA 1438
Query 1338 TGGTTTCTCGTGGTGTGCCACC-AAGTGTTGTAACTTATGGCATTTTGCTGGATGGTTTG 1396
||||||||||| || || || || | |||| || || |||||||||||||| |||
Sbjct 1439 TGGTTTCTCGTAAAGTTCCTCCTAA-TATTGTGACCTACAAAATTTTGCTGGATGGGTTG 1497
Query 1397 TGTGACAATGGAGAACT-ACAAAAAGCATTGGAGATATTTGAAAAAAT-GCAGAAGAGTA 1454
||||||||||| ||| | | ||||||| ||||| |||||||||||||| | |||||||||
Sbjct 1498 TGTGACAATGGGGAA-TCAGAAAAAGCGTTGGAAATATTTGAAAAAATAG-AGAAGAGTA 1555
Query 1455 GGAT-GATCCTTGGTATTGGCATCTATAATATCATCATTCACGGGATGTGCAATGCTAGT 1513
||| || |||| |||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1556 AGATGGA-GCTTGATATTGGTATCTATAACATCATCATTCACGGGATGTGCAATGCTAGT 1614
Query 1514 AAGGTCGATGATGCGTGG-AGTTTGTTCTGTAGCCTCTCTGTCAAAGGAGTGAAACCTGA 1572
||||| |||||||| ||| | ||| |||||||||||| | ||||||||||||| || |
Sbjct 1615 AAGGTGGATGATGCTTGGGA-TTTATTCTGTAGCCTCCCCCTCAAAGGAGTGAAGCCCGG 1673
Query 1573 TGTCTTGACATACAATGTAATGATTGGAGGACTATGTAAGAAAGGCTCGTTGTCTGAAGC 1632
|||| ||||||||| |||||||||| ||||| |||||||||||| | |||||||||||
Sbjct 1674 TGTCAAAACATACAATATAATGATTGGGGGACTGTGTAAGAAAGGCCCATTGTCTGAAGC 1733
Query 1633 CGATA-TGCTGTTTAGGAAAATG-AAGGAGGATGGGTGTGCTCC-GAGTGATTGTACGTA 1689
|| | || ||||||| |||||| ||| |||||||| ||| || || || ||| || ||
Sbjct 1734 GGA-ACTGTTGTTTAGAAAAATGGAAG-AGGATGGGCATGCGCCAGA-TGGTTGGACATA 1790
Query 1690 CAATATACTTATCAGGGCACATCTCGGAGGTAGTGGA-GTAATCTCTTCAGTTGAACTCA 1748
||| ||||| |||||||||||||| |||| | ||| | | || | |||||| |||| |
Sbjct 1791 CAACATACTCATCAGGGCACATCTTGGAGATGGTG-ATGCAACCAAATCAGTTAAACTTA 1849
Query 1749 TCGAAGAAATGAAGATGCGTGGGTTCGCTGCAGATGCTTCCACTATAAAGATGGTTGTTG 1808
| |||||| |||||| | | |||||| | | |||||||||||||||||||||||| | |
Sbjct 1850 TTGAAGAACTGAAGAGGTGCGGGTTCTCAGTTGATGCTTCCACTATAAAGATGGTTATCG 1909
Query 1809 TTATGTTATCAGATGGTAGATTGGATAAAACCTTTTTGGATATGCTTTCTT-GATTGTCT 1867
||||||||| |||||||||||| | |||| |||||||||||||||||||| || ||| |
Sbjct 1910 ATATGTTATCGGATGGTAGATTGAAGAAAAGCTTTTTGGATATGCTTTCTTAGAATGTTT 1969
Query 1868 AATCTGAAAT-A-CAAGAGATAAATCCAA-TATTT 1899
|||| || | | | ||||||||| | || |||||
Sbjct 1970 GATCTTAA-TCAACCAGAGATAAAGCTAACTATTT 2003
> AT1G12775.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:4353906-4355929 FORWARD LENGTH=2024
Length=2024
Score = 1070 bits (579), Expect = 0.0
Identities = 1410/1800 (78%), Gaps = 102/1800 (6%)
Strand=Plus/Plus
Query 110 TCTTATAAAGAGAGATTGAGGAATGGGATTGTTGATATTAAGGTTA-ATGAAGCTATTGA 168
||||||| ||| | |||||| | |||| |||| | |||||||| | |||| ||| ||||
Sbjct 163 TCTTATAGAGACAAATTGAGCAGTGGGCTTGTCGGTATTAAGG-CAGATGATGCTGTTGA 221
Query 169 TCTCTT-CGAATCCATGATTCAATCTCGTCCT-TTACCAAGTCTCATTGATTTCAGTAAA 226
||| || || | ||||||||| ||||||||| || || | | | || ||||||| || |
Sbjct 222 TCTGTTCCG-AGACATGATTCAGTCTCGTCCTCTT-CCCACTGTTATAGATTTCAATAGA 279
Query 227 TTGTTTAGTGCTGTTGCTAGAAGGAAAGAATATGATTTAGTGTTAGGTTTCTGCAAGGAA 286
||||||||||| |||| | || |||| | ||||| ||||||||| | |||||||| ||
Sbjct 280 TTGTTTAGTGCCATTGCCAAAACGAAACAGTATGAGCTAGTGTTAGCTCTCTGCAAGCAA 339
Query 287 ATGGATTTGAATGGG-ATTGAACATAACATGTATACTATGAACATTATGATCAATTGCTT 345
||||| | ||| ||| |||| ||||| ||| || ||| ||| |||||||||||||| ||
Sbjct 340 ATGGAATCGAA-GGGAATTGCACATAGCATCTACACTTTGAGTATTATGATCAATTG-TT 397
Query 346 T-TGTCGAAAAAGGAAAC-TTCTTTTCGCTTTTTCGGTTGTTGGGAGAGCTC-TGAAATT 402
| ||||| | |||| ||| || ||||||||| | | |||| || || ||||| |
Sbjct 398 TCTGTCGCTGTCGTAAACTTTC-TTACGCTTTTTCTACTATGGGGA-AGATCATGAAACT 455
Query 403 TGGGTTTGAGCCTAATACGA-TTA-CGTTT-TCGACTTTGA-TTAACGGGTTTTGCCTCG 458
||||| ||||||| |||| | | | | ||| | ||| | | | || || || || ||||
Sbjct 456 TGGGTATGAGCCTGATAC-AGTCATC-TTTAAC-ACTCT-ACTCAATGGCTTATGTCTCG 511
Query 459 AGGGTAGAGTTTCCGAAGCTGTGGCTTTAGTTGATCGGATGGTGGAAATGAAGGA-A-AG 516
|| |||||||||| |||||| ||| ||||||||||| ||||| |||||| ||| | |
Sbjct 512 AGTGTAGAGTTTCTGAAGCTCTGGAATTAGTTGATCGAATGGTAGAAATG--GGACATAA 569
Query 517 ACCGAATGTTGTGACGGTTAACACGT-TGATCAATGGACTTTGTCTTAAGGGTAGAGTGA 575
||| | | | | ||| ||||||| | || ||||||| |||||||| || |||| |||
Sbjct 570 ACCCACTCTCATAACGCTTAACAC-TCTGGTCAATGGCCTTTGTCTCAACGGTAAAGTCT 628
Query 576 CTGAAGCTTTGGTTTTGATTGATAGGATGGTTGAATA-TGGGTGTGAAGCTAATG-AGAT 633
|||| ||| |||||||||||||| | ||||||| | | ||| | | || | |||| || |
Sbjct 629 CTGATGCTGTGGTTTTGATTGATCGAATGGTTG-AGACTGGCTTTCAACCCAATGAAG-T 686
Query 634 TACTTATGGACCGGTTTTCAATAG-AATGTGTAAGTCAGG-GAACACTG-CTTTGGCTTT 690
||||||||||||||||| ||| | |||||||||||| || || |||| | || || |
Sbjct 687 AACTTATGGACCGGTTTTAAAT-GTAATGTGTAAGTCCGGCCAA-ACTGCCCTT-GCCAT 743
Query 691 GGATTTGCTTAGAAAGATGGAAGAAAGAAGTATCAAAGCTAG-TGTAGTTC-AGTATAGT 748
||| ||||| ||||||||||||||||||| |||| ||||| | || || || | || |||
Sbjct 744 GGAGTTGCTCAGAAAGATGGAAGAAAGAAATATC-AAGCTCGATGCAG-TCAAATACAGT 801
Query 749 ATTGTTATTGATAGTCTTTGTAAAGATGGGAACCTCGATGATGCGCTT-AGTCTTTTTAA 807
|| | |||||| ||||||| |||||||||| |||||| |||| || | ||||| ||
Sbjct 802 ATCATCATTGATGGTCTTTGCAAAGATGGGAGCCTCGACAATGC-ATTCAACCTTTTCAA 860
Query 808 TGAGATGGAGATGAAAGGGATCAAAGCAGATGTTGTTGCCTACAGTTCTATTATAGGAGG 867
||| ||||| || |||||| ||||||| ||| || || |||||| || | || |||||
Sbjct 861 TGAAATGGAAATCAAAGGGTTCAAAGCTGATATTATTACCTACAACACTCTCATTGGAGG 920
Query 868 TC-TTTGTAACGAC-GGTAGATGGGATGATGGTGCAAAGATGTTGAGGGAGATGATCGGA 925
| ||||||| | | |||||||||||||||||||| ||| | |||||||| |||||| |
Sbjct 921 -CTTTTGTAATG-CTGGTAGATGGGATGATGGTGCCAAGTTATTGAGGGATATGATC-AA 977
Query 926 -AGGAATATTATCCCTAATGTTGTCACATTTAGTGCTTTGATTGAT-GTTTTTGTGAAAG 983
||||| || | ||| || ||||||||||| |||| |||||||||| | |||||||||||
Sbjct 978 GAGGAAAATCAGCCCCAACGTTGTCACATTCAGTGTTTTGATTGATAG-TTTTGTGAAAG 1036
Query 984 AGGGGAAGCTTTTAGAGGCTAAGGAGTTG-TACAATGAAATGGTCGC-ACGAGGTATCGC 1041
|||| || || |||||| | | || | ||| || ||| | || ||||||||| ||
Sbjct 1037 AGGGAAAACTACGAGAGGCCGATCAACTGCT-CAAGGAGATGAT-GCAACGAGGTATAGC 1094
Query 1042 TCCTGACACCATTACATATAGTTCCTTGATTGATGGGTTTTGCAAGGAGAATCGGCTAG- 1100
|||| | || |||||||||| ||||||||| |||||||||||||||||||| || ||||
Sbjct 1095 TCCTAATACTATTACATATAATTCCTTGATAGATGGGTTTTGCAAGGAGAACCGCCTAGA 1154
Query 1101 GCGAGGCTAAT-CAGATGTTGGATCTGATGGTTAGCAAGGGACGTGAACCTAATATCGTG 1159
| ||||| || |||||| ||||||||||| ||||||||||| | || ||| ||||| ||
Sbjct 1155 G-GAGGC-CATCCAGATGGTGGATCTGATGATTAGCAAGGGATGCGATCCTGATATCATG 1212
Query 1160 AC-TTATAGTATTCTCATAAATAGTTACTGCAAAGCTAA--GAGAGTTGATAATGGTAT- 1215
|| || || ||| ||||||||| | || || || ||||| | || |||| ||||| |
Sbjct 1213 ACGTT-TAATATCCTCATAAATGGATATTGTAAGGCTAATCG-GA-TTGACGATGGTTTG 1269
Query 1216 GAGACTTTTCTGTGAGATTTCTTC-GAAAGGATTGGTTGCTGATACAGTCACTTATAACA 1274
|| ||| ||| | || || || || || |||| || ||||| ||||||| ||||||||||
Sbjct 1270 GA-ACTCTTCCGCGAAATGTC-TCTGAGAGGAGTGATTGCTAATACAGTTACTTATAACA 1327
Query 1275 CTCTTGTCCAAGGGTTTTGTCAATCGGGAAAACTTAATGTTGCTAAAGAACTATTCCAAG 1334
||||||||||||||||||||||||||||||||||| | ||||| ||| |||| |||||||
Sbjct 1328 CTCTTGTCCAAGGGTTTTGTCAATCGGGAAAACTTGAGGTTGCCAAAAAACTCTTCCAAG 1387
Query 1335 AGATGGTTTCTCGTG-GTGTGCCACCA-AGTGTTGTAACTTATGGCATTTTGCTGGATGG 1392
||||||||||||| | |||| | || | | |||| | || || |||||||||||
Sbjct 1388 AGATGGTTTCTCG-GCGTGTTCGTCCTGA-TATTGTGTCCTACAAAATATTGCTGGATGG 1445
Query 1393 TTTGTGTGACAATGGAGAACTACAAAAAGCATTGGAGATATTTGAAAAAAT-GCAGAAGA 1451
||||||||||||||||||||| | ||||||||||| ||||||| |||||| | ||||||
Sbjct 1446 GTTGTGTGACAATGGAGAACTAGAGAAAGCATTGGAAATATTTGGAAAAATAG-AGAAGA 1504
Query 1452 GTAGGATG-ATCCTTGGTATTGGCATCTATAAT-ATCATCATTCACGGGATGTGCAATGC 1509
||| |||| | | ||| |||||| || |||| | ||||| || || ||||||||||||||
Sbjct 1505 GTAAGATGGAGC-TTGATATTGGTATATATA-TGATCATTATCCATGGGATGTGCAATGC 1562
Query 1510 TAGTAAGGTCGATGATGCGTGG-AGTTTGTTCTGTAGCCTCTCTGTCAAAGGAGTGAAAC 1568
||||||||| |||||||| ||| | ||| |||||||||||| || ||||||||||||| |
Sbjct 1563 TAGTAAGGTGGATGATGCTTGGGA-TTTATTCTGTAGCCTCCCTCTCAAAGGAGTGAAGC 1621
Query 1569 CTGATGTCTTGA-CATACAATGTAATGATTGGAGGACTATGTAAGAAAGGCTCGTTGTCT 1627
||||| || | ||||||| |||||||| || | |||||| ||||| ||| |||||
Sbjct 1622 TTGATG-CTAGGGCATACAACATAATGATTTCAGAATTATGTAGGAAAGACTCACTGTCT 1680
Query 1628 GAAGCCGATATGCTGTTTAGGAAAATGA-AGGAGGATGGGTGTGCTCC-GAGTGA-TTGT 1684
|||| || || ||||| || ||||||| || |||| || |||||| || ||| |||
Sbjct 1681 AAAGCAGACATACTGTTCAGAAAAATGACAG-AGGAAGGACATGCTCCAGA-TGAGTTG- 1737
Query 1685 ACGTACAATATACTTATCAGGGCACATCTCGGAGGT-AGTGGA-GTAATCTCTTCAGTTG 1742
|| ||||| |||||||||||||||||||| || | | | || | | || | | ||| ||
Sbjct 1738 ACATACAACATACTTATCAGGGCACATCTTGGTGATGA-TG-ATGCAACCACAGCAGCTG 1795
Query 1743 AACTCATCGAAGAAATGAAGA-TGCGTGGGTTCGCTGCAGATGCTTCCACTATAAAGATG 1801
|||| || ||||||||||||| | |||||||| | ||||||| ||||||| | ||||||
Sbjct 1796 AACTTATTGAAGAAATGAAGAGTA-GTGGGTTCCCAGCAGATGTTTCCACTGTTAAGATG 1854
Query 1802 GTTGTTGTTATG-TTATC-AGATGGTAGA-TTGGATAAAACCTTTTTGGATATGCTTTCT 1858
||| || |||| || || || |||| || ||||| |||| |||| | ||||||||||||
Sbjct 1855 GTTATTAATATGCTT-TCTAG-TGGT-GAATTGGACAAAAGCTTTCTAGATATGCTTTCT 1911
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96083843130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5