BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479767
Length=588
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22480.2 | Symbols: PDF2 | prefoldin 2 | chr3:7968177-796962... 898 0.0
AT3G22492.1 | Symbols: | pseudogene of prefoldin-related KE2 f... 309 2e-83
> AT3G22480.2 | Symbols: PDF2 | prefoldin 2 | chr3:7968177-7969629
FORWARD LENGTH=602
Length=602
Score = 898 bits (486), Expect = 0.0
Identities = 558/592 (94%), Gaps = 7/592 (1%)
Strand=Plus/Plus
Query 1 TCTTCCTCGTGTGTGGATTCGTTTCTAAAAGATCGAAGCAATGGCCAGCAAATCTGGAAG 60
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 13 TCTTCCTCGTGTGTGGATTCGTTTCTGAAAGATCGAAGTAATGGCCAGCAAATCTGGAAG 72
Query 61 CGGTGGTCTAAGAGAACCGCCGAATGAGCAAGCTGTTTTGAACATGTATGAAGCCAAGAG 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 73 CGGTGGCCTAAGAGAACCGCCGAATGAGCAAGCTGTTTTGAACATGTATGAAGGCAAGAG 132
Query 121 ATCAGAGCTTAGCCAAATCTACTCCAACATAACTGAACTCGAGATGCAAGTGAGCGAACA 180
||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 133 ATCAGAGCTAAGCCAAATCTACTCCAACATAACCGACCTCGAGATGCAAGTGAGCGAACA 192
Query 181 TTCTCTGGTCATTAACGCCATTCAGCCTCTTGACCAATCGAGGAAATGCTTTCGCATGAT 240
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 193 TTCTCTGGTCATTAACGCCATTCAGCCTCTCGACCAATCGAGGAAATGCTTCCGCATGAT 252
Query 241 AGGAGGCGTTCTTGTCGAGAGAACCATCAAAGAGGTACTCCCAGCTGTCCAACGTAACAA 300
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 253 AGGAGGCGTTCTTGTCGAAAGAACCATCAAAGAGGTACTACCAGCTGTCCAACGTAACAA 312
Query 301 GGAAGGGCTTGAAGAGGTTGTGAGGAAGCTATACGAGACATTGGAGAAGAAGAAGAAAGA 360
||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 313 GGACGGACTTGAAGAGGTTGTGAGGAAGCTATACGAGACATTGGAGAAAAAGAAGAAAGA 372
Query 361 TCTTACAGAGTTTGAAGCTATGTATAAGATCAGGATAAGGAAACAAGACGATAACAAGGA 420
|||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||
Sbjct 373 TCTTACAGAGTTTGAAGCTAAGTATAAGATCAGGATAACGAAACAAGAAGATAACAAGGA 432
Query 421 AGAAGGGAACAAGAAGGAAGGTAATGCTCAAGGTGTTCTTGTCGGAGCTGCCAGTTCGAG 480
|| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 433 AGGAGGTAACAAGAAGGAAGGTAATGCTCAAGGTGTTCTTGTTGGAGCTGCCAGTTCAAG 492
Query 481 CCAGTAAAACTCTGTTATT-GGC-GTTTTGTTTTACTGTTGTATCTCTTTTTTGGATCGT 538
||||||||||||| | ||| ||| |||| ||||||||||||||||||||||||||||| |
Sbjct 493 CCAGTAAAACTCTAT-ATTTGGCAGTTT-GTTTTACTGTTGTATCTCTTTTTTGGATC-T 549
Query 539 T-TGGTTAAAAGCCGTGACCTTTTCTGGGAAAA-TCAAGATGTTTTGAATGT 588
| |||||||||||||| | |||| |||| |||| |||| |||||||||||||
Sbjct 550 TATGGTTAAAAGCCGTAAACTTTGCTGGAAAAAATCAACATGTTTTGAATGT 601
> AT3G22492.1 | Symbols: | pseudogene of prefoldin-related KE2
family protein | chr3:7971071-7971575 FORWARD LENGTH=428
Length=428
Score = 309 bits (167), Expect = 2e-83
Identities = 275/324 (85%), Gaps = 20/324 (6%)
Strand=Plus/Plus
Query 149 ATAACTGAACTCGAGATGCAAGTGAGCGAACATTCTCTGGTCATTAACGCCATTCAGCCT 208
||||||||||||||| |||||||||||||| | ||||||||||| ||||||||| | |||
Sbjct 46 ATAACTGAACTCGAGGTGCAAGTGAGCGAATACTCTCTGGTCATCAACGCCATTAAACCT 105
Query 209 CTT-GACCAATCGAGGAAATGCTTTC-GCATGATAGGAGGCGT--TC-TT-GTCGAGAGA 262
|| ||||||||||||||||| | | |||||| ||||||| | | || |||||||||
Sbjct 106 -TTCAACCAATCGAGGAAATGC-TCCTGCATGAGAGGAGGC-TAGGCGTTGGTCGAGAGA 162
Query 263 ACCATCAAAGAGGTACTCCCAGC-TGTCCAACGTA-ACAAGGAAGGGCTTGAAGAGGTTG 320
||| ||| ||| ||||||||| | ||| ||||| | | ||||||||| | |||||| |||
Sbjct 163 ACCGTCAGAGACGTACTCCCA-CATGTGCAACGCATA-AAGGAAGGGATCGAAGAGTTTG 220
Query 321 TGAGGAAGC--TATA--CGAGACATTGGAGAAGAAGAAGAAAGATCTTACAGAGTTTGAA 376
||| ||||| |||| |||||||||||| |||||||||||||||| |||||| | ||||
Sbjct 221 TGAAGAAGCTATATATCCGAGACATTGGACAAGAAGAAGAAAGATCGTACAGAATCTGAA 280
Query 377 GCTATGTATAA-GATCAGGATAAGGAAACAAGACGATAACAAGGAAGAAGGG-AACAAGA 434
|||| |||||| |||||||||||||| || || ||||||||||||| |||| || ||||
Sbjct 281 GCTAAGTATAACCATCAGGATAAGGAAGCAGGATGATAACAAGGAAG-AGGGTAATAAGA 339
Query 435 AGGAAGGTAATGCTCAAGGTGTTC 458
||||||||||||||||||||||||
Sbjct 340 AGGAAGGTAATGCTCAAGGTGTTC 363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28281824761
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5