BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479770
Length=662
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22510.1 | Symbols: | Pre-rRNA-processing protein TSR2, con... 867 0.0
> AT3G22510.1 | Symbols: | Pre-rRNA-processing protein TSR2, conserved
region | chr3:7973429-7974292 FORWARD LENGTH=695
Length=695
Score = 867 bits (469), Expect = 0.0
Identities = 620/688 (90%), Gaps = 30/688 (4%)
Strand=Plus/Plus
Query 1 CTCTGTGTTCCCATACACAAAATCTTCCAGCTTCTG-TTCTCCGTTTTGTTTAACGGAGT 59
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 11 CTCTGTGTTCCCATACACAAAATCTTCCAGCTTCTGTTTCTCCGTTTTGTTCAACGGAGT 70
Query 60 TACAAGGCGGAAGAACCCGCTTT--CTTCGGCCGGAAAGACCAAAGATATGGGAACCGGT 117
||||| ||||||||| | |||| |||||||| |||||||||||||||||||||| |||
Sbjct 71 TACAAAGCGGAAGAA--C-CTTTGCCTTCGGCCTGAAAGACCAAAGATATGGGAACTGGT 127
Query 118 GGAATAACGTTCAACGCTCACGTGGTCTC-CGACACATGGCATCACAAGCACGTGCCTTC 176
|||||||||| |||||||||||||||||| | ||| ||||||||||||||||||||| |
Sbjct 128 GGAATAACGTCCAACGCTCACGTGGTCTCTC-CCACGTGGCATCACAAGCACGTGCCTCC 186
Query 177 TGTGGCCGACGACTCTGTTCTTCAGAGAGACATCAGAGAGCTTCTTTCGCGTTGGGGCGG 236
| ||| ||||||||||||||||| ||||||||| ||||||||||||| || ||||||||
Sbjct 187 TATGGATGACGACTCTGTTCTTCAAAGAGACATCGGAGAGCTTCTTTCACGGTGGGGCGG 246
Query 237 GCTTCAAATGGCCGTGAAGAACCAATGGGGAGGCCATGATTCTCTCAAGAAATCTCAAGA 296
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 247 GCTTCAAATGGCCGTAAAGAACCAGTGGGGAGGCCATGATTCTCTCAAGAAATCTCAAGA 306
Query 297 GCTAGCTCACCATCTATTTCATCTCTTCTCTCAATCAAACGTGATTACGGTGGAAGAAAT 356
|||||||||| |||| ||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 307 GCTAGCTCACAATCTTTTTCATCTCATCTCTCAATCAAATGTGATTACGGTGGAAGAAAT 366
Query 357 AGAGAATTTGCTACATGAAAGCTTGCTTCTCTCTTTCAACACAGAGATCGAAGATGGCAG 416
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 367 AGAGAATTTGCTACATGAAAGCTTGCTTCTTTCTTTCAACACAGAGATTGAAGATGGCAG 426
Query 417 CATTGAAGAGGTAGCTGAACAATTGATGATACTCCATGAAGAACATTTGCGTGGGAGTCA 476
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 427 CATTGAAGAGGTAGCTGAACAATTGATGATACTCCATGAAGAACATTTACGTGGGACTCT 486
Query 477 TTAAGCAGTAGCTTGAACGATTTATTTCATTTTTGGTGTATAATTAGATCAATGT--GA- 533
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 487 TTAAGCAGTAGCTTGAACGATTTATATCATTTTTGGTGTATAATTAGATCAATGTAAGAT 546
Query 534 A-AA----TTG------GG-TGGAGAAGAAA-TGTTATTCATCAGTCATCATAGAATATA 580
| || ||| || |||| || ||| | ||||||||||| |||||||||||||
Sbjct 547 ACAAAGAATTGAAAATTGGGTGGACAACAAAATATTATTCATCAGAAATCATAGAATATA 606
Query 581 TGAAT-C--A--AAGATCTATGTTTATTTGATGTAATCATTT-GTATTTGTGATTAACAG 634
|||| | | || ||||||||||||||||||||||||||| ||| ||||||| |||||
Sbjct 607 GGAATACGTATCAAAATCTATGTTTATTTGATGTAATCATTTTGTAGTTGTGATGAACAG 666
Query 635 TTTTTCCTAATGTAATCTCATATTAACC 662
|||||||||||||||| ||| |||||||
Sbjct 667 TTTTTCCTAATGTAATTTCAAATTAACC 694
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31999151639
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5