BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479772
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22530.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1386 0.0
> AT3G22530.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT4G14830.1);
Has 77 Blast hits to 77 proteins in 12 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:7977604-7978635
REVERSE LENGTH=1032
Length=1032
Score = 1386 bits (750), Expect = 0.0
Identities = 940/1027 (92%), Gaps = 31/1027 (3%)
Strand=Plus/Plus
Query 1 AGAGGGGTATTTTGGTAAATTAAGAAATGCCCTTATCTCATTTCCGATCCT-C--CTTCT 57
||||||||| ||||||||||| ||||||||||||||||||||||||||| | |||||
Sbjct 1 AGAGGGGTAGTTTGGTAAATTTTCAAATGCCCTTATCTCATTTCCGATCCTCCTTCTTCT 60
Query 58 TGGTGCCGCCTTCGCACCCATTCATaaaaaaaGGAAAGACGCAAtcttttcttgtctctt 117
|| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 TGCTACCGCCTTCGCACCCATTCAT-AAAAAAGGAAAGACGCAATCTTTTCTTGTCTCTT 119
Query 118 cca----ttc---t--t-c--ataaagctttcctctttcactttctattctctttAATCC 165
||| ||| | | | |||||||||||||||||||||||||| ||||||||||||
Sbjct 120 CCATTGCTTCAAATCCTCCTAATAAAGCTTTCCTCTTTCACTTTCTAATCTCTTTAATCC 179
Query 166 GTTTAAATCCAATCTCAAAATCCAATATTTCGATTACAAAACTCCAACATTTTGCAGATT 225
|||||||||||||| | |||| | | |||| |||||||||| || |||||||||| ||||
Sbjct 180 GTTTAAATCCAATC-CCAAATAC-AGATTTTGATTACAAAAATCTAACATTTTGCTGATT 237
Query 226 TGTGTTCTAGGGTTCTATCGTTTTTGTTTATGA-TTTGATTCCCATCAAGATTCAATCAG 284
|||||| ||||||||| |||| ||| ||||||| |||||||||| | ||||||||||||
Sbjct 238 TGTGTTTTAGGGTTCTCTCGTGTTT-TTTATGATTTTGATTCCCGTAAAGATTCAATCAC 296
Query 285 TTTTCTCATATCTCTTATTGCTGAATTTGATCCAATCGATCGATAAACCAAACCCAGAAG 344
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TTTTCTCATATCTCTTGTTACTGAATTTGATCCAATCGATCGATAAACCAAACCCAGAAG 356
Query 345 CTATGAGAGTCCACCCAATTCCCAGAAACCTCAACAACACTTTGATCCATCATCA-C--C 401
|||||||||| |||||||||||||||||| |||||||||| |||||||||||||| | |
Sbjct 357 CTATGAGAGTGCACCCAATTCCCAGAAACATCAACAACACATTGATCCATCATCATCATC 416
Query 402 ATAACCCGACCCGAGAACCCGGAAAGAATCTCCGGCGATTGCCACATATCTTCAACCGTG 461
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 417 ATAACCCGACCCGAGAACCCGGAAAGAATCTCCGACGATTACCACATATCTTCAACCGTG 476
Query 462 TTCTGGAGCTGCCATTGAGGTCAGAGGCAGATGTAACAGTGGAAGAGAGACACGACTGTT 521
|||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 477 TTCTGGAGCTACCATTGAGGTCAGAAGCAGATGTAGCAGTGGAAGAGAGACACGACTGTT 536
Query 522 TTCGATTCGTGGCGGAGACGGTAGGTCTTTGTGACGGTGATGGAGAAATGAGGGCTTATA 581
||||||| |||||||||||||||||||| ||| |||| ||||||||||||||||||||||
Sbjct 537 TTCGATTTGTGGCGGAGACGGTAGGTCTCTGTAACGGCGATGGAGAAATGAGGGCTTATA 596
Query 582 TGGTTGAGATTCATCCGGGTATAACCAAGATCGTTGTTAGGACAAATGGGTCGTCTTCTC 641
|||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||
Sbjct 597 TGGTTGAGATTCATCCTGGTATAACCAAGATCGTTGTGAGGACAAATGGGTCTTCTTCTC 656
Query 642 TTGGTTTGTCTTTAGACGAGTTAGAGCTTGACGTGTGGCGTTTTAGGCTACCGGAATCTA 701
||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
Sbjct 657 TTGGTTTGTCTTTAGACGAATTAGAGCTTGACGTGTGGCGTTTTAGGTTACCGGAATCAA 716
Query 702 CTAGGCCTGAGCTTGTTACTGTGGCTTGTGTTGATGGAGATTTGATTGTTACTGTGCCTA 761
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 717 CTAGGCCTGAGCTTGTTACTGTTGCTTGTGTTGATGGTGATTTGATTGTTACTGTGCCTA 776
Query 762 AGAATGCTGAAGAAGAAGATGATGATGATGGTGGTGGTGATTTTGGACAAGGTATGGGTA 821
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 777 AGAATGCTGAAGAAGAAGATGATGATGGTGGTGGTGGTGATTTTGGACAAGGTATTGGTA 836
Query 822 GTGGAAGGCTAGTGCTTGTTCAGTGAATCAA-GTTATGTTCTTTATGTAATGATGGAGA- 879
|||||||||| |||||||||||||||||||| || |||| || ||||||| ||| |||
Sbjct 837 GTGGAAGGCTTGTGCTTGTTCAGTGAATCAAAGTAATGTCCTCTATGTAAC-ATG-AGAA 894
Query 880 GAAGACAAAACTCTAATCTTCCTCGTTTCGTTGATATTGTGTAGCCTTCTGTTTTTCTTG 939
|||||| || ||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 895 GAAGACTAATCTCTAATCTTCTTCGTTTCGTTGATATTGTGTAGCCTTCTGTTTTTGTTG 954
Query 940 TTGGCAATAAAAGAAA-GATTGAATCTTTGATC-TCTC--ATTTTGTAAGATCAAGAAGG 995
|||||||||||||||| ||||||||||||||| |||| ||||||||||||||| ||||
Sbjct 955 TTGGCAATAAAAGAAAAGATTGAATCTTTGATGATCTCTTATTTTGTAAGATCAACAAGG 1014
Query 996 GTTATTT 1002
||| |||
Sbjct 1015 GTTGTTT 1021
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49078761619
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5