BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479775
Length=604
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22560.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) sup... 859 0.0
> AT3G22560.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily
protein | chr3:7998857-7999533 REVERSE LENGTH=677
Length=677
Score = 859 bits (465), Expect = 0.0
Identities = 559/605 (92%), Gaps = 3/605 (0%)
Strand=Plus/Plus
Query 1 TAAAAATAACAAAATTTTGCAAAACCAATGGATTCACCTATAATCTTTCTCCGGCCGTTC 60
||||| |||||||||||| || | | ||||| ||||| | |||||| ||||||||||||
Sbjct 72 TAAAACTAACAAAATTTTACATGATC-ATGGAATCACCAAGAATCTTCCTCCGGCCGTTC 130
Query 61 AATCTCTCCGATGCAGAAGACGTCCTCAAATGGGCCGGTGACGATGACGTGACACGTTAC 120
|||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||
Sbjct 131 AATCTCTCCGATGCAGAAGACGTCTTTAAATGGGCCGGTGACGATGACGTCACACGTTAC 190
Query 121 CTCCGTTGGGACTCCGTTAAAACCTTAGAAGAAGCCAAACAACACATCTTAAACAAGGCT 180
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 191 CTCCGTTGGGACTCCGTTAACTCCTTAGAAGAAGCTAAACAACACATCTTAAACAAGGCT 250
Query 181 ATACCACACCCATGGCGCCGTTCCATCTCTCTCGTCCAACACGGTCGTTCG-TTAGGTTA 239
||||||||||||||||||||||||||||||||| ||||| |||||| |||| || |||||
Sbjct 251 ATACCACACCCATGGCGCCGTTCCATCTCTCTCCTCCAAGACGGTCATTCGATT-GGTTA 309
Query 240 CGTCTCCGTCAATCCAGATTCAGGTGATGGTCGGTGCCGAGCCGACCTTGCATACGCTAT 299
||| |||||||| ||||| || |||||||||||||||||||||||||| ||||||||| |
Sbjct 310 CGTATCCGTCAAGCCAGACTCCGGTGATGGTCGGTGCCGAGCCGACCTCGCATACGCTGT 369
Query 300 AGCTAAAGAGTTTTGGGGGCGAGGGATAGCCACGGCGGCGGTGAGGATGGCGGTGGAACA 359
|||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||
Sbjct 370 CGCTAAAGAGTTTTGGGGGCGGGGGATAGCCACAGCGGCGGTGAGGATGGCGGTTGAACA 429
Query 360 AGCTTTCGAGGATTTTCCGGAGTTGGTGAGGCTACAAGCGGTGGTGGAGGTGGAGAACAA 419
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 430 AGCTTTGGAGGATTTTCCGGAGGTGGTGAGGCTACAAGCGGTGGTGGAGGTGGAGAACAA 489
Query 420 AGCGTCTCAGAGGGTGTTGGAGAAAGCTGGATTTCGAAAAGAGGGTTTGCTTGAGAAGTA 479
|||||| || ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 490 AGCGTCCCAAAGGGTTTTGGAGAAAGCTGGATTTCGAAAAGAGGGTTTACTTGAGAAGTA 549
Query 480 TGGTTTTAGCAAAGGAGTGATCAAAGACATGTTTCTCTATAGTTTTGTTAAAGATGATTG 539
|||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||
Sbjct 550 TGGTTTTAGCAAAGGAGTCATCAGAGACATGTTTCTCTATAGTTACGTTAAAGATGATTG 609
Query 540 TTTTGTGTAATAATTAACGGTAGAAATAATGGAGGAAGTAAGTAAATAATATCCGGTTTT 599
|||||||| ||| ||||||||| ||||||||||| |||||| ||||||||||||||||||
Sbjct 610 TTTTGTGTGATAGTTAACGGTAAAAATAATGGAGAAAGTAACTAAATAATATCCGGTTTT 669
Query 600 TACCG 604
|||||
Sbjct 670 TACCG 674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29085571113
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5