BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479778
Length=827
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22620.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 1162 0.0
> AT3G22620.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr3:8008534-8009590
FORWARD LENGTH=868
Length=868
Score = 1162 bits (629), Expect = 0.0
Identities = 752/811 (93%), Gaps = 10/811 (1%)
Strand=Plus/Plus
Query 22 acaacaaacaaacaaacCTTAATCTATCCAACAATGTCGAAGATTCTAGT-CGTGGTGGT 80
||||||||||| |||| |||||||||||||||||||||||||||| | | | | |||||
Sbjct 49 ACAACAAACAATCAAAGCTTAATCTATCCAACAATGTCGAAGATTAT-TTCCCTTGTGGT 107
Query 81 GGCGATGATCGCAGTGCTAGCTTTGCCGATTCGCAGTCAACAACAACCGCTTAGCCAATG 140
||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||
Sbjct 108 GGCGATGATCGCAGTGCTAGCTTTGCCGATTCGTGGTCAACAACAACCTCTAAGCCAATG 167
Query 141 TACTCCGTCTATGATGACCACTGTGAGTCCTTGTATGAGCTTCATAACCAACAGTAGCAG 200
|||||| || ||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 168 TACTCCATCAATGATGACCACCGTGAGTCCTTGTATGGGCTTCATAACCAACAGTAGCAG 227
Query 201 CAACGGAACTTCGCCGTCGTCTGATTGTTGCAACTCGCTGAGGTCTTTGACCACCGGAGG 260
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 228 CAATGGAACTTCGCCGTCGTCTGATTGTTGTAACTCGCTGAGGTCTTTGACCACCGGAGG 287
Query 261 GATGGGATGTCTCTGTCTAATTGTCACTGGAACTGTGCCTTTCAATATTCCGATTAACCG 320
||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 288 AATGGGATGTCTTTGTCTAATTGTCACTGGAACTGTTCCTTTCAATATTCCTATTAACCG 347
Query 321 CACAACCGCCGTCTCTCTTCCTCGTGCTTGTAACATGCCTAGAGTCCCTCTTCAATGCCA 380
||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 348 CACAACCGCTGTCTCACTTCCCCGTGCTTGTAACATGCCTAGAGTCCCTCTTCAATGCCA 407
Query 381 AGCCAATATTGCTCCAGCTGCTGCTCCTGGACCTGCTGGTACATTTGGACCGTCGATGTC 440
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 408 AGCCAATATTGCTCCAGCTGCTGCTCCTGGACCTGCTGCTACATTTGGACCATCGATGTC 467
Query 441 TCCAGGTCCAGCGACGAATCCTATAGTCCCAGAGCCAACTGCGTCAGCTCAGACACCACA 500
|||||| |||| |||| |||| || || |||||||||||| || ||||||||||||||||
Sbjct 468 TCCAGGACCAGAGACGGATCCAATTGTTCCAGAGCCAACTCCGGCAGCTCAGACACCACA 527
Query 501 GTCTGATACAACCCGACC-TTTCACACCATCTGCCGATGGTGGAGCTCCAACATCAGACG 559
|||||||||||||||||| ||| |||||||| | ||| ||||||||||||||||||||||
Sbjct 528 GTCTGATACAACCCGACCATTT-ACACCATCCGTCGACGGTGGAGCTCCAACATCAGACG 586
Query 560 ACGGAGGCAGCACCAGTCGACCTTCTGAGACTCCTTCATCTGCCTACGCACTCTCACCAT 619
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 587 ACGGAGGAAGCACCAGTCGACCTTCTGAGACTCCTTCATCCGCCTACGCACTCTCACCAT 646
Query 620 CTCTTTTCTTATTCAGCATCGCCCTCGTAGCTCTCAAATTCTACTAATGATGATTTCTTT 679
||||| |||| |||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 647 CTCTTCTCTTCTTCAGCATCGCCCTCGTAGCTCTCAAATTCTACT---GATGATTCCTTT 703
Query 680 -GTTTCTTTGTATTCCTCATGTGATTTGATTTATGCATTGTTGATTATATAAAGAAACCA 738
||||||||| |||||| |||||||||||||||||||| |||||||||| ||||||||||
Sbjct 704 TGTTTCTTTGCATTCCTTATGTGATTTGATTTATGCATCGTTGATTATAGAAAGAAACCA 763
Query 739 TTTATTTGGTCATTGCTTTGTGGAATAAGCTT--GTGTATATTGTTCTTTGTTTCGAGTG 796
|||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||
Sbjct 764 TTTATTTGGTCATTGCTTTGTGGAATAAGCTTTTGTGTATACTGTTCTCTGTTTCGAGTG 823
Query 797 AGATTTATTTTGTATTGTTAAAGTAATACAT 827
||||||||||||| ||||| |||||||||||
Sbjct 824 AGATTTATTTTGTGTTGTTGAAGTAATACAT 854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40287785894
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5