BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479780
Length=1130
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22660.1 | Symbols: | rRNA processing protein-related | chr... 1668 0.0
> AT3G22660.1 | Symbols: | rRNA processing protein-related | chr3:8016051-8017508
REVERSE LENGTH=1180
Length=1180
Score = 1668 bits (903), Expect = 0.0
Identities = 1068/1145 (93%), Gaps = 22/1145 (2%)
Strand=Plus/Plus
Query 1 GTttcttcttcttcttcttTGCGCCGGC-GTTTCACTA-------TCTCTCTCT--AAAA 50
||||||||||||||||| |||||||||| | ||||||| ||||||||| ||||
Sbjct 9 GTTTCTTCTTCTTCTTCCTTGCGCCGGCGGGTTCACTATCTCTCTTCTCTCTCTCAAAAA 68
Query 51 CCCTTTC-CAAGCAAAAGCTTCTTCAATCTTCTTCGTAGTTAACAATGTCGTTGGAAGAG 109
||| | | |||||| |||||||||||||||||| |||| | ||||||||| |||||||||
Sbjct 69 CCC-TACTCAAGCACAAGCTTCTTCAATCTTCTCCGTAATCAACAATGTCATTGGAAGAG 127
Query 110 GATATAGTATCAGATGATGAGATGAACATGATTGATGAGGATAG-TGCTACTGACTCTGA 168
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||
Sbjct 128 GATATAGTATCAGATGATGAGATGAACATGATTGATGAGGAT-GATGCTACTGACTCCGA 186
Query 169 AGCGGAATCGCTTTCGGATTCGGATACAGAGAACGAGATAACGGAGAAATTGGCTGAGCC 228
|||||| || ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 187 AGCGGAGTCTCTTTCGGATTCGGATACAGAGAACGAGATCACCGAGAAATTGGCTGAGCC 246
Query 229 TACGAAGACTGCTG-TATACAACAGAGATGGGTTGCTTGATAAACTTCAAGATATAAGCT 287
|||||||||||| | |||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 247 TACGAAGACTGC-GATATACAACAGAGATGGGTTGCTTGATAAGCTTCAAGATATTAGCT 305
Query 288 GGCCTGAAGATGTTGATTGGACTCATAAGCTAACTGTTGAGATTGATCAGGGACAAGCTG 347
||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||
Sbjct 306 GGCCTGAAGATGTTGATTGGACTCATAAGCTTACTGTTGAGATTGACCAGGGAGGAGCTG 365
Query 348 TGGATGTGAACGATGACCTTGCGAGGGAGATGGCGTTCTATACTCAAGCTCTTGAAGGGA 407
||||||| ||||||||||||||||| |||| ||||||||| |||||||| ||||||||||
Sbjct 366 TGGATGTAAACGATGACCTTGCGAGAGAGACGGCGTTCTACACTCAAGCGCTTGAAGGGA 425
Query 408 CGAGAGAAGCGTTTGGGAAACTCAATGAAATGGGTGTGAATTTCCTCAGGCCGGCGAATT 467
| |||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||
Sbjct 426 CAAGAGAAGCGTTTGGTAAACTCAATGAAATGGGTGTGAATTTTCTCAGGCCTGCGAATT 485
Query 468 ACTATGCTGAGATGGTGAAATCGGATATTCATATGGAGAAAGTGAAGTCTCGGCTTTTGC 527
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 486 ACTATGCGGAGATGGTGAAATCGGATGTTCATATGGAGAAAGTGAAGTCTCGGCTTTTGC 545
Query 528 ATGAGAAGAAACAGATTGAGGAGTCTGAAGAGAGGAGGAAGGCTAGGGATAATAAGAGAA 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 ATGAGAAGAAACAGATTGAGGAGTCTGAAGAGAGGAGGAAGGCTAGGGATAATAAGAGAA 605
Query 588 TGGCTAAGGAAGTACAGTCTCAGAAGATGAAGGAACGTGCGAAGCAGAAGAAGGATGATA 647
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 606 TGGCTAAGGAAGTACAGTCTCAGAAGATGAAGGAACGTGCGAAGGAGAAGAAGGATAACA 665
Query 648 TTGAGTCTGTGAAGAAGTGGAGGAAACAGAGGCAGCAGAGTGGGTTTAGTGATGAAGCGG 707
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 666 TTGAGTCTGTGAAGAAGTGGAGGAAACAGAGGCAGCAGAGTGGGTTTAGTGATAAAGCTG 725
Query 708 GTGAGCCTGAACTTGATTTTGAAAGCGGAAAGAGTTTCCAGAGAGGAGGAGGTAAGAAAA 767
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 726 GTGAGCCTGAACTTGATTTCGAAAGTGGAAAGAGTTTCCAGAGAGGAGGAGGTAAGAAAA 785
Query 768 GACCAGGTGTTTCTCCCGGGGATCGATCAGGAGGCAAAGGAAGGCCTACTTCGAGGATGA 827
|||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 786 GACCAGGTGTGTCTCCCGGAGATCGATCAGGAGGTAAAGGAAGGCCTACTTCGAGGATGG 845
Query 828 GCAACAAGAAGAGGGAGTTTCGGGATTCCAAGTTTGGTCATGGTGGTAGGAAGGGTTTGA 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 GCAACAAGAAGAGGGAGTTTCGGGATTCCAAGTTTGGTCATGGTGGTAGGAAGGGTTTGA 905
Query 888 GCAAGCAGAACACAGCAGAGACAACAAATGATTTCAGGGGCGGATTTC-GTGGTGGAAGA 946
|||||||||||||||||||||| ||||| ||||||| ||||| |||| ||||||||| |
Sbjct 906 GCAAGCAGAACACAGCAGAGACGACAAACGATTTCAAAGGCGG-TTTCCGTGGTGGAAAA 964
Query 947 GCCGGCGGAAACAACAAGAGGCAGAAGAGGTAAAAGGTTTGATTATCTAAACCCACTTCA 1006
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 GCTAGCGGAAACAA---GAGGCAGAAGAGGTAAAAGGTTTGATTATCTAAACCCACTTCA 1021
Query 1007 AAACTACTATAAACTATTTGTCTTCTGGGttttttt-AAGAACATGTATTTTGTTTTGGG 1065
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1022 AAACTACTATAAACTATTTGTCTTCTTTGTTTTTTTTAAGAACATGTATTTTGTTTTGGA 1081
Query 1066 AACCCTGTAGAAAGGGTTTTAGAACCATTACAATTTTGTACTAGTGATTACTTGAATTAA 1125
|||||||| | |||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1082 AACCCTGTGGTAAGGGTCTTAGAACCAATACAATTTTGTACTAGTGATTACTTGAATTAA 1141
Query 1126 CAAAG 1130
|||||
Sbjct 1142 CAAAG 1146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55421401680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5