BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479783 Length=2712 Score E Sequences producing significant alignments: (Bits) Value AT3G22690.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein o... 4041 0.0 AT1G05870.1 | Symbols: | Protein of unknown function (DUF1685)... 235 2e-60 AT1G33350.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 76.8 1e-12 > AT3G22690.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 49784 Blast hits to 14716 proteins in 280 species: Archae - 2; Bacteria - 10; Metazoa - 107; Fungi - 167; Plants - 48594; Viruses - 0; Other Eukaryotes - 904 (source: NCBI BLink). | chr3:8021229-8024534 REVERSE LENGTH=2935 Length=2935 Score = 4041 bits (2188), Expect = 0.0 Identities = 2548/2723 (94%), Gaps = 19/2723 (1%) Strand=Plus/Plus Query 1 ATGGCGATGTTGGGGAATTTTCTTCATTTCTCTCCAATGGTGTTAG---CCATTTCGACT 57 |||||||||||||| ||| |||||||| |||||||||||||||||| ||| ||||| Sbjct 1 ATGGCGATGTTGGGTAATGTTCTTCATCTCTCTCCAATGGTGTTAGCCACCACGACGACT 60 Query 58 TCGAAACCATCTCTTCCAAACCAGAGCAAGCGTACCAAAGCCACAACATCGTCGTTAAAG 117 ||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||| Sbjct 61 ACGAAACCATCTCTTCTAAACCAGAGCAAGTGTACCAAAGCCACGCCATCGTCGTTAAAG 120 Query 118 AATTGTAAAACCATTGACGAACTCAAAATGTTTCATCTTTCGCTCACAAAGCAAGGCCTT 177 ||||| |||||||| |||||||||||||||||||||| ||||||||| |||||||| ||| Sbjct 121 AATTGCAAAACCATAGACGAACTCAAAATGTTTCATCGTTCGCTCACGAAGCAAGGACTT 180 Query 178 GATGATGATGTCTCCGCTATAACTAAGCTTGTAGCACGAAGTTGTGAATTGGGTACACGT 237 ||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 181 GATAATGATGTCTCCACTATAACTAAGCTTGTAGCACGGAGTTGTGAATTGGGTACTCGT 240 Query 238 GAAAGTTTAAGTTTTGCTAAAGAAGTGTTTGAGAATGGTGAATCGTATGGAACTTGTTTC 297 |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 241 GAAAGTTTGAGCTTTGCTAAAGAAGTGTTTGAGAACAGTGAATCGTATGGAACTTGTTTC 300 Query 298 ATGTACAATTCTTTGATTCGAGGATATGCATCTTCTGGGTTATGTAAAGAAGCTATCTTG 357 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||| Sbjct 301 ATGTACAATTCTTTGATTCGAGGATATGCATCTTCTGGGTTATGCAACGAAGCTATATTG 360 Query 358 TTATTTATTCGAATGATGAATTCTGGGATTTCTCCAGATAAGTACACGTTTCCTTTTGGA 417 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TTATTTCTTCGAATGATGAATTCTGGGATTTCTCCAGATAAGTACACGTTTCCTTTTGGA 420 Query 418 TTGAGTGTGTGTGCGAAGAGCAGAGATAAAGGTAACGGGATTCAGATTCATGGGTTGATT 477 ||||||| ||||||||| ||||||| |||||||| |||||||||||||||||||||||| Sbjct 421 TTGAGTGCGTGTGCGAAAAGCAGAGCGAAAGGTAATGGGATTCAGATTCATGGGTTGATT 480 Query 478 ATTAAGATGGATTATGCGAAGGATTTGTTTGTGCAGAACTCGTTGGTTCATTTTTATGCA 537 | ||||||| ||||||||| ||||||||||||||||||||| ||||||||||||| || Sbjct 481 GTGAAGATGGGTTATGCGAAAGATTTGTTTGTGCAGAACTCGCTGGTTCATTTTTACGCC 540 Query 538 GAGTGTGGAGAGCTTCATTGTGCACGTAAGGTGTTTGATGAAATGTCTGAGAGAAATGTT 597 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GAGTGTGGAGAGCTTGATAGTGCACGTAAGGTGTTTGATGAAATGTCTGAGAGAAATGTT 600 Query 598 GTTTCTTGGACGAGTATGATTTGTGGGTATGCGAGGCGGGAGTTTGCGAAAGACGCTGTT 657 |||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||| Sbjct 601 GTTTCTTGGACGAGTATGATTTGTGGTTACGCGAGGCGGGATTTTGCTAAAGACGCTGTT 660 Query 658 GATTTGTTTTTCCGGATGGTGAGAGACGAAGAGGTGACTCCTAATTCGGTCACAATGGTG 717 ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 661 GATTTGTTTTTTCGGATGGTGAGAGATGAAGAGGTGACTCCTAATTCGGTTACAATGGTG 720 Query 718 TGTGTCATATCGGCTTGTGCTAAGCTAGAGGATCTTGAAACGGGTGAGAAGGTTTATGCT 777 ||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 721 TGTGTGATATCGGCTTGTGCTAAGCTAGAGGATCTTGAGACGGGCGAGAAGGTTTATGCT 780 Query 778 TTAATCCGTGATTCTGGGATTGAAGTTAACGACCTTATGATTAGTGCACTGGTCGATATG 837 || |||||| ||||||| ||||||||||| || |||||| ||||||||||||| |||||| Sbjct 781 TTTATCCGTAATTCTGGTATTGAAGTTAATGATCTTATGGTTAGTGCACTGGTTGATATG 840 Query 838 TACATGAAATGCAATGCCATTGATATAGCAAAACGGCTTTTTGATGAGTATGGTGCTAGT 897 |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| Sbjct 841 TACATGAAATGCAATGCCATTGATGTAGCAAAACGGCTTTTTGATGAATATGGTGCTAGT 900 Query 898 AATTTGAATTTGTGCAATGCAATGGCATCAAATTATGTGCGGCAAGGATTAACGAAGGAG 957 |||||| ||||||||||||||||||||||||||||||| |||||||| ||||||| |||| Sbjct 901 AATTTGGATTTGTGCAATGCAATGGCATCAAATTATGTACGGCAAGGGTTAACGAGGGAG 960 Query 958 GCTCTAGGTGTCTTGAATCTAATGATGGACTCTGGTATTAGACCTGATAGGATTTCGATG 1017 ||| ||||||| || ||||| ||||||||||||||| ||||||||||||||||||||||| Sbjct 961 GCTTTAGGTGTTTTTAATCTGATGATGGACTCTGGTGTTAGACCTGATAGGATTTCGATG 1020 Query 1018 TTGAGTGCGATTTCATCTTGTTCACAGTTGAGGAATATCTTGTGGGGAAAGAGCTGTCAT 1077 |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 1021 TTGAGTGCGATTTCATCTTGTTCACAATTGAGAAATATCTTGTGGGGAAAGAGCTGTCAT 1080 Query 1078 GGGTATGTACTGAGGAATGGGTTTGA-ATGTTGGGATAATATATGCAATGCGTTGATTGA 1136 ||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 1081 GGGTATGTATTGAGGAATGGGTTTGAGA-GTTGGGATAATATATGCAATGCGTTGATTGA 1139 Query 1137 TATGTACATGAAATGTCATAGGCAAGATACTGCGTTTAGGATCTTTGATCGAATGTCGAA 1196 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1140 TATGTACATGAAATGTCATAGGCAAGATACTGCGTTTAGGATCTTTGATCGGATGTCGAA 1199 Query 1197 TAAGACTGTCGTCACATGGAATTCGATAGTTGCTGGCTATATAAAGAATGGTGAGGTGGA 1256 ||||| || || || ||||| ||||| |||||||||||| || |||||||||||||||| Sbjct 1200 CAAGACAGTGGTGACGTGGAACTCGATTGTTGCTGGCTATGTAGAGAATGGTGAGGTGGA 1259 Query 1257 TGCAGCCTGGGAAACATTT-AACACCATGCCTGAGAAAAACATTGTTTCTTGGAACACGA 1315 ||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| Sbjct 1260 TGCAGCCTGGGAAACATTTGAA-ACCATGCCTGAGAAAAACATTGTTTCTTGGAATACGA 1318 Query 1316 TCATAAGCGCTCTGGTGCAAGAAAATATGTATGAGGAAGCGATTGAAGTTTTCCATTATA 1375 | || |||| ||||||||||| || | ||| |||||||||||||||||||||| || || Sbjct 1319 TTATCAGCGGTCTGGTGCAAGGAAGTTTGTTTGAGGAAGCGATTGAAGTTTTCTGTTCTA 1378 Query 1376 TGCAAAGCCAAGAGGGTGTCAATGCGGATGGTGTGACAATGATGAGTATTGCATCTGCTT 1435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1379 TGCAAAGCCAAGAGGGTGTCAATGCGGATGGTGTGACAATGATGAGTATTGCATCTGCTT 1438 Query 1436 GTGGGCACTTGGGAGCTCTTGATCTAGCAAAATGGATATATTACTACATTGAAAAGAACA 1495 |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 1439 GTGGGCACTTGGGAGCTCTTGATCTAGCTAAATGGATATATTACTACATTGAGAAGAACG 1498 Query 1496 GAATTCAGCTTGATGTCAGACTTGGTACAACCTTAGTAGATATGTTTTCTAGGTGTGGGG 1555 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1499 GAATTCAGCTTGATGTCAGACTTGGTACAACCTTAGTAGATATGTTTTCTAGGTGTGGGG 1558 Query 1556 ATCCTGAAAGCGCAATGTCGATTTTCAATAGTTTGACAAACAGAGATGTCTCAGCTTGGA 1615 |||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 1559 ATCCTGAAAGTGCTATGTCAATTTTTAATAGTTTGACAAACAGAGATGTCTCAGCTTGGA 1618 Query 1616 CAGCGGCTATAGGAGCAATGGCTATGGCAGGAAACGCTGAGCGAGCAATTGAGCTTTTCA 1675 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1619 CAGCGGCTATAGGAGCAATGGCTATGGCAGGAAACGCTGAGCGAGCAATTGAGCTTTTCG 1678 Query 1676 ATGAGATGATTGAACAAGGCTTGAAACCAGATGGGGTTGTGTTTGTTGGAGCATTGACAG 1735 |||| |||||||||||||| ||||||||||||||||||| ||||||||||||| |||||| Sbjct 1679 ATGATATGATTGAACAAGGGTTGAAACCAGATGGGGTTGCGTTTGTTGGAGCACTGACAG 1738 Query 1736 CTTGCAGCCATGGTGGATTGGTCCAACAGGGTAAGGAAATCTTCAATTCAATGGAGAAGC 1795 |||||||||||||||||||||||||||||||||||||||| ||| |||| ||| ||| | Sbjct 1739 CTTGCAGCCATGGTGGATTGGTCCAACAGGGTAAGGAAATTTTCTATTCGATGTTGAAAC 1798 Query 1796 TTCACGGAGTTTCTCCAGAAGATGTGCACTATGGATGCATGGTTGATCTGCTAGGTCGAG 1855 |||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 1799 TTCATGGAGTTTCTCCAGAAGATGTGCACTATGGATGTATGGTTGATCTGCTTGGTCGAG 1858 Query 1856 CAGGATTGTTAGAGGAAGCTCTGCAACTCATAAAGGACATGCCTACGGAGCCAAACGATG 1915 |||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||| Sbjct 1859 CAGGATTGTTAGAGGAAGCTGTGCAACTCATTGAGGACATGCCTATGGAGCCAAACGATG 1918 Query 1916 TGATTTGGAATTCTCTTTTAGCTGCTTGTCGTGTTCAGGGAAATGTGGAGATGGCAGCTT 1975 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1919 TGATTTGGAACTCTCTTTTAGCTGCTTGTCGTGTTCAGGGAAATGTGGAGATGGCAGCTT 1978 Query 1976 TTGCAGCTGAGAAGGTACAAGTCTTAGCTCCAGAGAGAACTGGGAGCTATGTTCTTCTGT 2035 |||||| |||||| |||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 1979 ATGCAGCCGAGAAGATACAAGTCTTGGCTCCAGAGAGAACTGGGAGTTATGTTCTTCTGT 2038 Query 2036 CAAATGTTTATGCATCAGCTGGAAGATGGAACGACATGGCTAGAGTGAGACTGAGTATGA 2095 |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 2039 CAAATGTTTATGCATCAGCTGGAAGATGGAACGACATGGCGAAAGTGAGACTGAGTATGA 2098 Query 2096 AGGAGAAAGGATTACGTAAACCGCCAGGGACTAGTGT-AATACAGATTCGAGGTAAGACC 2154 |||||||||| |||||||||||||||||||||||| | |||||||||||||||||| ||| Sbjct 2099 AGGAGAAAGGGTTACGTAAACCGCCAGGGACTAGT-TCAATACAGATTCGAGGTAAAACC 2157 Query 2155 CATGAGTTCACATCAGGGGATGAGTCACACCCTGAAATGCCAAAAATAGAAGCAATGCTC 2214 |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 2158 CATGAGTTCACATCAGGGGACGAGTCACACCCTGAAATGCCAAACATAGAAGCAATGCTA 2217 Query 2215 GATGAACTTAGTCAAAGAGCCACTCACTTAGGCCATGTACCAGATCTTAGTAATGTTCTG 2274 |||||| ||||||||||||| | |||||||||||||||||| ||||||||||||||||| Sbjct 2218 GATGAAGTTAGTCAAAGAGCGAGTCACTTAGGCCATGTACCTGATCTTAGTAATGTTCTT 2277 Query 2275 ATGGATGTAGATGA-ACAAGAGAAGATCTTTATGCTTAGTC-GACATAGCGAGAAACTTG 2332 |||||||| ||||| | |||||||||||||||||||||| | |||| ||||||||||||| Sbjct 2278 ATGGATGTTGATGAGA-AAGAGAAGATCTTTATGCTTAG-CAGACACAGCGAGAAACTTG 2335 Query 2333 CAATGGCCTTTGGGCTCATTAGCTCAAACAAAGGAACAACAATCCGAATAGTCAAGAACC 2392 ||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 2336 CAATGGCCTATGGACTCATTAGCTCAAACAAAGGCACAACAATCCGAATAGTCAAGAACC 2395 Query 2393 TAAGAGTATGCTCTTATTGTCATTCATTTGCAAAATTTGCATCCAAAGTATACAACAGAG 2452 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2396 TAAGAGTATGCTCTGATTGTCATTCATTTGCAAAATTTGCATCCAAAGTATACAACAGAG 2455 Query 2453 AAATCATTCTAAGAGACAATAACCGGTTTCATTTCATCCGTCAAGGAAAGTGTTCTTGCA 2512 ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 2456 AAATCATTCTAAGAGACAATAACCGGTTTCATTACATCCGTCAAGGGAAGTGTTCTTGCG 2515 Query 2513 GTGACTTCTGTTTGACGGATGACGATCTCGAAGATCTCAAAGGTTGTTTAGATCTAGGCT 2572 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2516 GTGACTTCTGTTTGACGGATGACGATCTCGAAGTTCTCAAAGGTTGTTTAGATCTAGGCT 2575 Query 2573 TTGGTTTCAGCTATGACGAGATCCCTGAGCTCTGCAACACTTTACCTGCTTTAGAGCTTT 2632 ||||||||| ||| ||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 2576 TTGGTTTCAACTACGACGAGATCCCTGCGCTCTGCAAGACTTTACCTGCTTTAGAGCTTT 2635 Query 2633 GCTATTCAATGAGCCAGAAGT-TCTTAGACGATAAGCATA-ACTGCATAAGTC-AATTGC 2689 |||||||||||||||| || | |||||||||||||||| || ||| | || |||||| Sbjct 2636 GCTATTCAATGAGCCAAAAAAAT-TTAGACGATAAGCATACAC--CATCACTCCAATTGC 2692 Query 2690 CAATTGGAAGATCTCTAGTCCCG 2712 ||||||||||||||||||||||| Sbjct 2693 CAATTGGAAGATCTCTAGTCCCG 2715 > AT1G05870.1 | Symbols: | Protein of unknown function (DUF1685) | chr1:1772211-1773293 REVERSE LENGTH=878 Length=878 Score = 235 bits (127), Expect = 2e-60 Identities = 141/148 (95%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 2522 GTTTGACGGATGACGATCTCGAAGATCTCAAAGGTTGTTTAGATCTAGGCTTTGGTTTCA 2581 |||||||||||||||| ||||||||||| | |||||||||||||||||| |||||||| | Sbjct 313 GTTTGACGGATGACGACCTCGAAGATCTTAGAGGTTGTTTAGATCTAGGGTTTGGTTTTA 372 Query 2582 GCTATGACGAGATCCCTGAGCTCTGCAACACTTTACCTGCTTTAGAGCTTTGCTATTCAA 2641 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 373 GCTACGACGAGATCCCTGAGCTCTGCAACACTTTACCTGCTTTGGAGCTTTGCTATTCAA 432 Query 2642 TGAGCCAGAAGTTCTTAGACGATAAGCA 2669 |||||||||||||||||||||||||||| Sbjct 433 TGAGCCAGAAGTTCTTAGACGATAAGCA 460 Score = 52.8 bits (28), Expect = 2e-05 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 2685 ATTGCCAATTGGAAGATCTCTAGTCCCG 2712 |||||||||||||||||||||||||||| Sbjct 528 ATTGCCAATTGGAAGATCTCTAGTCCCG 555 > AT1G33350.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:12089403-12091687 REVERSE LENGTH=2285 Length=2285 Score = 76.8 bits (41), Expect = 1e-12 Identities = 58/66 (88%), Gaps = 2/66 (3%) Strand=Plus/Plus Query 569 TGTTTGATGAAATGTCTGAGAGAAATGTTGTTTCTTGGAC-GAGTATGATTTGTGGGTAT 627 |||| || |||||||||||||||||||||||||||||||| | |||| ||| ||||||| Sbjct 551 TGTTCGACGAAATGTCTGAGAGAAATGTTGTTTCTTGGACTGC-TATGCTTTCTGGGTAT 609 Query 628 GCGAGG 633 || ||| Sbjct 610 GCTAGG 615 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 134698241955 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5