BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479783
Length=2712
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22690.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein o... 4041 0.0
AT1G05870.1 | Symbols: | Protein of unknown function (DUF1685)... 235 2e-60
AT1G33350.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 76.8 1e-12
> AT3G22690.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein
of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide
repeat (InterPro:IPR002885); BEST Arabidopsis thaliana
protein match is: Tetratricopeptide repeat (TPR)-like superfamily
protein (TAIR:AT2G29760.1); Has 49784 Blast hits to
14716 proteins in 280 species: Archae - 2; Bacteria - 10;
Metazoa - 107; Fungi - 167; Plants - 48594; Viruses - 0; Other
Eukaryotes - 904 (source: NCBI BLink). | chr3:8021229-8024534
REVERSE LENGTH=2935
Length=2935
Score = 4041 bits (2188), Expect = 0.0
Identities = 2548/2723 (94%), Gaps = 19/2723 (1%)
Strand=Plus/Plus
Query 1 ATGGCGATGTTGGGGAATTTTCTTCATTTCTCTCCAATGGTGTTAG---CCATTTCGACT 57
|||||||||||||| ||| |||||||| |||||||||||||||||| ||| |||||
Sbjct 1 ATGGCGATGTTGGGTAATGTTCTTCATCTCTCTCCAATGGTGTTAGCCACCACGACGACT 60
Query 58 TCGAAACCATCTCTTCCAAACCAGAGCAAGCGTACCAAAGCCACAACATCGTCGTTAAAG 117
||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 61 ACGAAACCATCTCTTCTAAACCAGAGCAAGTGTACCAAAGCCACGCCATCGTCGTTAAAG 120
Query 118 AATTGTAAAACCATTGACGAACTCAAAATGTTTCATCTTTCGCTCACAAAGCAAGGCCTT 177
||||| |||||||| |||||||||||||||||||||| ||||||||| |||||||| |||
Sbjct 121 AATTGCAAAACCATAGACGAACTCAAAATGTTTCATCGTTCGCTCACGAAGCAAGGACTT 180
Query 178 GATGATGATGTCTCCGCTATAACTAAGCTTGTAGCACGAAGTTGTGAATTGGGTACACGT 237
||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 181 GATAATGATGTCTCCACTATAACTAAGCTTGTAGCACGGAGTTGTGAATTGGGTACTCGT 240
Query 238 GAAAGTTTAAGTTTTGCTAAAGAAGTGTTTGAGAATGGTGAATCGTATGGAACTTGTTTC 297
|||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 GAAAGTTTGAGCTTTGCTAAAGAAGTGTTTGAGAACAGTGAATCGTATGGAACTTGTTTC 300
Query 298 ATGTACAATTCTTTGATTCGAGGATATGCATCTTCTGGGTTATGTAAAGAAGCTATCTTG 357
|||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct 301 ATGTACAATTCTTTGATTCGAGGATATGCATCTTCTGGGTTATGCAACGAAGCTATATTG 360
Query 358 TTATTTATTCGAATGATGAATTCTGGGATTTCTCCAGATAAGTACACGTTTCCTTTTGGA 417
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTATTTCTTCGAATGATGAATTCTGGGATTTCTCCAGATAAGTACACGTTTCCTTTTGGA 420
Query 418 TTGAGTGTGTGTGCGAAGAGCAGAGATAAAGGTAACGGGATTCAGATTCATGGGTTGATT 477
||||||| ||||||||| ||||||| |||||||| ||||||||||||||||||||||||
Sbjct 421 TTGAGTGCGTGTGCGAAAAGCAGAGCGAAAGGTAATGGGATTCAGATTCATGGGTTGATT 480
Query 478 ATTAAGATGGATTATGCGAAGGATTTGTTTGTGCAGAACTCGTTGGTTCATTTTTATGCA 537
| ||||||| ||||||||| ||||||||||||||||||||| ||||||||||||| ||
Sbjct 481 GTGAAGATGGGTTATGCGAAAGATTTGTTTGTGCAGAACTCGCTGGTTCATTTTTACGCC 540
Query 538 GAGTGTGGAGAGCTTCATTGTGCACGTAAGGTGTTTGATGAAATGTCTGAGAGAAATGTT 597
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAGTGTGGAGAGCTTGATAGTGCACGTAAGGTGTTTGATGAAATGTCTGAGAGAAATGTT 600
Query 598 GTTTCTTGGACGAGTATGATTTGTGGGTATGCGAGGCGGGAGTTTGCGAAAGACGCTGTT 657
|||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||
Sbjct 601 GTTTCTTGGACGAGTATGATTTGTGGTTACGCGAGGCGGGATTTTGCTAAAGACGCTGTT 660
Query 658 GATTTGTTTTTCCGGATGGTGAGAGACGAAGAGGTGACTCCTAATTCGGTCACAATGGTG 717
||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 661 GATTTGTTTTTTCGGATGGTGAGAGATGAAGAGGTGACTCCTAATTCGGTTACAATGGTG 720
Query 718 TGTGTCATATCGGCTTGTGCTAAGCTAGAGGATCTTGAAACGGGTGAGAAGGTTTATGCT 777
||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 721 TGTGTGATATCGGCTTGTGCTAAGCTAGAGGATCTTGAGACGGGCGAGAAGGTTTATGCT 780
Query 778 TTAATCCGTGATTCTGGGATTGAAGTTAACGACCTTATGATTAGTGCACTGGTCGATATG 837
|| |||||| ||||||| ||||||||||| || |||||| ||||||||||||| ||||||
Sbjct 781 TTTATCCGTAATTCTGGTATTGAAGTTAATGATCTTATGGTTAGTGCACTGGTTGATATG 840
Query 838 TACATGAAATGCAATGCCATTGATATAGCAAAACGGCTTTTTGATGAGTATGGTGCTAGT 897
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 841 TACATGAAATGCAATGCCATTGATGTAGCAAAACGGCTTTTTGATGAATATGGTGCTAGT 900
Query 898 AATTTGAATTTGTGCAATGCAATGGCATCAAATTATGTGCGGCAAGGATTAACGAAGGAG 957
|||||| ||||||||||||||||||||||||||||||| |||||||| ||||||| ||||
Sbjct 901 AATTTGGATTTGTGCAATGCAATGGCATCAAATTATGTACGGCAAGGGTTAACGAGGGAG 960
Query 958 GCTCTAGGTGTCTTGAATCTAATGATGGACTCTGGTATTAGACCTGATAGGATTTCGATG 1017
||| ||||||| || ||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 961 GCTTTAGGTGTTTTTAATCTGATGATGGACTCTGGTGTTAGACCTGATAGGATTTCGATG 1020
Query 1018 TTGAGTGCGATTTCATCTTGTTCACAGTTGAGGAATATCTTGTGGGGAAAGAGCTGTCAT 1077
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1021 TTGAGTGCGATTTCATCTTGTTCACAATTGAGAAATATCTTGTGGGGAAAGAGCTGTCAT 1080
Query 1078 GGGTATGTACTGAGGAATGGGTTTGA-ATGTTGGGATAATATATGCAATGCGTTGATTGA 1136
||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1081 GGGTATGTATTGAGGAATGGGTTTGAGA-GTTGGGATAATATATGCAATGCGTTGATTGA 1139
Query 1137 TATGTACATGAAATGTCATAGGCAAGATACTGCGTTTAGGATCTTTGATCGAATGTCGAA 1196
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1140 TATGTACATGAAATGTCATAGGCAAGATACTGCGTTTAGGATCTTTGATCGGATGTCGAA 1199
Query 1197 TAAGACTGTCGTCACATGGAATTCGATAGTTGCTGGCTATATAAAGAATGGTGAGGTGGA 1256
||||| || || || ||||| ||||| |||||||||||| || ||||||||||||||||
Sbjct 1200 CAAGACAGTGGTGACGTGGAACTCGATTGTTGCTGGCTATGTAGAGAATGGTGAGGTGGA 1259
Query 1257 TGCAGCCTGGGAAACATTT-AACACCATGCCTGAGAAAAACATTGTTTCTTGGAACACGA 1315
||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct 1260 TGCAGCCTGGGAAACATTTGAA-ACCATGCCTGAGAAAAACATTGTTTCTTGGAATACGA 1318
Query 1316 TCATAAGCGCTCTGGTGCAAGAAAATATGTATGAGGAAGCGATTGAAGTTTTCCATTATA 1375
| || |||| ||||||||||| || | ||| |||||||||||||||||||||| || ||
Sbjct 1319 TTATCAGCGGTCTGGTGCAAGGAAGTTTGTTTGAGGAAGCGATTGAAGTTTTCTGTTCTA 1378
Query 1376 TGCAAAGCCAAGAGGGTGTCAATGCGGATGGTGTGACAATGATGAGTATTGCATCTGCTT 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 TGCAAAGCCAAGAGGGTGTCAATGCGGATGGTGTGACAATGATGAGTATTGCATCTGCTT 1438
Query 1436 GTGGGCACTTGGGAGCTCTTGATCTAGCAAAATGGATATATTACTACATTGAAAAGAACA 1495
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1439 GTGGGCACTTGGGAGCTCTTGATCTAGCTAAATGGATATATTACTACATTGAGAAGAACG 1498
Query 1496 GAATTCAGCTTGATGTCAGACTTGGTACAACCTTAGTAGATATGTTTTCTAGGTGTGGGG 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 GAATTCAGCTTGATGTCAGACTTGGTACAACCTTAGTAGATATGTTTTCTAGGTGTGGGG 1558
Query 1556 ATCCTGAAAGCGCAATGTCGATTTTCAATAGTTTGACAAACAGAGATGTCTCAGCTTGGA 1615
|||||||||| || ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1559 ATCCTGAAAGTGCTATGTCAATTTTTAATAGTTTGACAAACAGAGATGTCTCAGCTTGGA 1618
Query 1616 CAGCGGCTATAGGAGCAATGGCTATGGCAGGAAACGCTGAGCGAGCAATTGAGCTTTTCA 1675
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 CAGCGGCTATAGGAGCAATGGCTATGGCAGGAAACGCTGAGCGAGCAATTGAGCTTTTCG 1678
Query 1676 ATGAGATGATTGAACAAGGCTTGAAACCAGATGGGGTTGTGTTTGTTGGAGCATTGACAG 1735
|||| |||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1679 ATGATATGATTGAACAAGGGTTGAAACCAGATGGGGTTGCGTTTGTTGGAGCACTGACAG 1738
Query 1736 CTTGCAGCCATGGTGGATTGGTCCAACAGGGTAAGGAAATCTTCAATTCAATGGAGAAGC 1795
|||||||||||||||||||||||||||||||||||||||| ||| |||| ||| ||| |
Sbjct 1739 CTTGCAGCCATGGTGGATTGGTCCAACAGGGTAAGGAAATTTTCTATTCGATGTTGAAAC 1798
Query 1796 TTCACGGAGTTTCTCCAGAAGATGTGCACTATGGATGCATGGTTGATCTGCTAGGTCGAG 1855
|||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1799 TTCATGGAGTTTCTCCAGAAGATGTGCACTATGGATGTATGGTTGATCTGCTTGGTCGAG 1858
Query 1856 CAGGATTGTTAGAGGAAGCTCTGCAACTCATAAAGGACATGCCTACGGAGCCAAACGATG 1915
|||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||
Sbjct 1859 CAGGATTGTTAGAGGAAGCTGTGCAACTCATTGAGGACATGCCTATGGAGCCAAACGATG 1918
Query 1916 TGATTTGGAATTCTCTTTTAGCTGCTTGTCGTGTTCAGGGAAATGTGGAGATGGCAGCTT 1975
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 TGATTTGGAACTCTCTTTTAGCTGCTTGTCGTGTTCAGGGAAATGTGGAGATGGCAGCTT 1978
Query 1976 TTGCAGCTGAGAAGGTACAAGTCTTAGCTCCAGAGAGAACTGGGAGCTATGTTCTTCTGT 2035
|||||| |||||| |||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1979 ATGCAGCCGAGAAGATACAAGTCTTGGCTCCAGAGAGAACTGGGAGTTATGTTCTTCTGT 2038
Query 2036 CAAATGTTTATGCATCAGCTGGAAGATGGAACGACATGGCTAGAGTGAGACTGAGTATGA 2095
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 2039 CAAATGTTTATGCATCAGCTGGAAGATGGAACGACATGGCGAAAGTGAGACTGAGTATGA 2098
Query 2096 AGGAGAAAGGATTACGTAAACCGCCAGGGACTAGTGT-AATACAGATTCGAGGTAAGACC 2154
|||||||||| |||||||||||||||||||||||| | |||||||||||||||||| |||
Sbjct 2099 AGGAGAAAGGGTTACGTAAACCGCCAGGGACTAGT-TCAATACAGATTCGAGGTAAAACC 2157
Query 2155 CATGAGTTCACATCAGGGGATGAGTCACACCCTGAAATGCCAAAAATAGAAGCAATGCTC 2214
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 2158 CATGAGTTCACATCAGGGGACGAGTCACACCCTGAAATGCCAAACATAGAAGCAATGCTA 2217
Query 2215 GATGAACTTAGTCAAAGAGCCACTCACTTAGGCCATGTACCAGATCTTAGTAATGTTCTG 2274
|||||| ||||||||||||| | |||||||||||||||||| |||||||||||||||||
Sbjct 2218 GATGAAGTTAGTCAAAGAGCGAGTCACTTAGGCCATGTACCTGATCTTAGTAATGTTCTT 2277
Query 2275 ATGGATGTAGATGA-ACAAGAGAAGATCTTTATGCTTAGTC-GACATAGCGAGAAACTTG 2332
|||||||| ||||| | |||||||||||||||||||||| | |||| |||||||||||||
Sbjct 2278 ATGGATGTTGATGAGA-AAGAGAAGATCTTTATGCTTAG-CAGACACAGCGAGAAACTTG 2335
Query 2333 CAATGGCCTTTGGGCTCATTAGCTCAAACAAAGGAACAACAATCCGAATAGTCAAGAACC 2392
||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2336 CAATGGCCTATGGACTCATTAGCTCAAACAAAGGCACAACAATCCGAATAGTCAAGAACC 2395
Query 2393 TAAGAGTATGCTCTTATTGTCATTCATTTGCAAAATTTGCATCCAAAGTATACAACAGAG 2452
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2396 TAAGAGTATGCTCTGATTGTCATTCATTTGCAAAATTTGCATCCAAAGTATACAACAGAG 2455
Query 2453 AAATCATTCTAAGAGACAATAACCGGTTTCATTTCATCCGTCAAGGAAAGTGTTCTTGCA 2512
||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 2456 AAATCATTCTAAGAGACAATAACCGGTTTCATTACATCCGTCAAGGGAAGTGTTCTTGCG 2515
Query 2513 GTGACTTCTGTTTGACGGATGACGATCTCGAAGATCTCAAAGGTTGTTTAGATCTAGGCT 2572
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2516 GTGACTTCTGTTTGACGGATGACGATCTCGAAGTTCTCAAAGGTTGTTTAGATCTAGGCT 2575
Query 2573 TTGGTTTCAGCTATGACGAGATCCCTGAGCTCTGCAACACTTTACCTGCTTTAGAGCTTT 2632
||||||||| ||| ||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 2576 TTGGTTTCAACTACGACGAGATCCCTGCGCTCTGCAAGACTTTACCTGCTTTAGAGCTTT 2635
Query 2633 GCTATTCAATGAGCCAGAAGT-TCTTAGACGATAAGCATA-ACTGCATAAGTC-AATTGC 2689
|||||||||||||||| || | |||||||||||||||| || ||| | || ||||||
Sbjct 2636 GCTATTCAATGAGCCAAAAAAAT-TTAGACGATAAGCATACAC--CATCACTCCAATTGC 2692
Query 2690 CAATTGGAAGATCTCTAGTCCCG 2712
|||||||||||||||||||||||
Sbjct 2693 CAATTGGAAGATCTCTAGTCCCG 2715
> AT1G05870.1 | Symbols: | Protein of unknown function (DUF1685)
| chr1:1772211-1773293 REVERSE LENGTH=878
Length=878
Score = 235 bits (127), Expect = 2e-60
Identities = 141/148 (95%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 2522 GTTTGACGGATGACGATCTCGAAGATCTCAAAGGTTGTTTAGATCTAGGCTTTGGTTTCA 2581
|||||||||||||||| ||||||||||| | |||||||||||||||||| |||||||| |
Sbjct 313 GTTTGACGGATGACGACCTCGAAGATCTTAGAGGTTGTTTAGATCTAGGGTTTGGTTTTA 372
Query 2582 GCTATGACGAGATCCCTGAGCTCTGCAACACTTTACCTGCTTTAGAGCTTTGCTATTCAA 2641
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 373 GCTACGACGAGATCCCTGAGCTCTGCAACACTTTACCTGCTTTGGAGCTTTGCTATTCAA 432
Query 2642 TGAGCCAGAAGTTCTTAGACGATAAGCA 2669
||||||||||||||||||||||||||||
Sbjct 433 TGAGCCAGAAGTTCTTAGACGATAAGCA 460
Score = 52.8 bits (28), Expect = 2e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 2685 ATTGCCAATTGGAAGATCTCTAGTCCCG 2712
||||||||||||||||||||||||||||
Sbjct 528 ATTGCCAATTGGAAGATCTCTAGTCCCG 555
> AT1G33350.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:12089403-12091687 REVERSE LENGTH=2285
Length=2285
Score = 76.8 bits (41), Expect = 1e-12
Identities = 58/66 (88%), Gaps = 2/66 (3%)
Strand=Plus/Plus
Query 569 TGTTTGATGAAATGTCTGAGAGAAATGTTGTTTCTTGGAC-GAGTATGATTTGTGGGTAT 627
|||| || |||||||||||||||||||||||||||||||| | |||| ||| |||||||
Sbjct 551 TGTTCGACGAAATGTCTGAGAGAAATGTTGTTTCTTGGACTGC-TATGCTTTCTGGGTAT 609
Query 628 GCGAGG 633
|| |||
Sbjct 610 GCTAGG 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 134698241955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5