BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479786
Length=1147
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22740.1 | Symbols: HMT3 | homocysteine S-methyltransferase ... 1766 0.0
> AT3G22740.1 | Symbols: HMT3 | homocysteine S-methyltransferase
3 | chr3:8032959-8035809 REVERSE LENGTH=1384
Length=1384
Score = 1766 bits (956), Expect = 0.0
Identities = 1084/1147 (95%), Gaps = 3/1147 (0%)
Strand=Plus/Plus
Query 1 AACCATATGAATCTCACGATCAAAGATAACATCTCATATTCTTCTATATAGTACTTGTCT 60
||||||||||||||||||||||||||||| ||||| | || ||||||||||| ||||||
Sbjct 1 AACCATATGAATCTCACGATCAAAGATAATATCTC--A-TCATCTATATAGTATTTGTCT 57
Query 61 CGGTAATAGAGACGTACACACTTTGTTTATAGTCAAATCAATATGGGATCTTTCGTGAAA 120
|| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 58 CGATATTAGAGACGTACACACTTTGTTTATACTCAAATCAATATGGGATCTTTCGTGAAA 117
Query 121 GAGGAAACGTCGTCGTTGATGACGGATTTTTTGGAGAACTGTGGCGGTTATGCGGTGGTG 180
|| |||||||||||||||||||| |||||||||||||| || || |||||||||||||||
Sbjct 118 GAAGAAACGTCGTCGTTGATGACAGATTTTTTGGAGAAGTGCGGTGGTTATGCGGTGGTG 177
Query 181 GACGGAGGGTTTGCGACGGAGCTACAACGCCACGGGGCTGACATCAATGATCCACTTTGG 240
|| ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 178 GATGGAGGGTTTGCGACGGAGCTACAGCGCCACGGAGCTGATATCAATGATCCACTTTGG 237
Query 241 AGTGCTAAGTGCCTCATTACTTCTCCTCACCTTGTTACAAAGGTGCACTTGGATTACCTT 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AGTGCTAAGTGCCTTATTACTTCTCCTCACCTTGTTACAAAGGTGCACTTGGATTACCTT 297
Query 301 GAATCTGGAGCAAATATCATCATTACAGCATCTTACCAGGCGACGATACAAGGATTCGTA 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 298 GAATCTGGAGCAAATATCATCATAACAGCATCTTACCAGGCGACGATACAAGGTTTTGTG 357
Query 361 GCAAAAGGTTTATCTGTGGGAGAAGCGGAAAGTTTACTTAGGAGGAGCGTTGAAATCACG 420
||||||||| |||| ||||||||||| |||| ||||||||| ||||||||||||||||||
Sbjct 358 GCAAAAGGTCTATCGGTGGGAGAAGCAGAAAATTTACTTAGAAGGAGCGTTGAAATCACG 417
Query 421 TACGAGGCACGTGAGATTTTCTACAACAGATGCACCAAGGGTTCATGGGATTTCGCCTAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TACGAGGCACGTGAGATTTTCTACAACAGATGCACCAAGGGTTCATGGGATTTCGCCTAC 477
Query 481 GCCGGAAAAGCTTCCCGGCGACCTATTCTTGTTGCAGCTTCCGTTGGTAGCTATGGAGCT 540
|| ||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||
Sbjct 478 GCTGGAAAAGCTTCCCGGAGACCAATTCTTGTCGCAGCTTCCGTTGGTAGCTATGGAGCT 537
Query 541 TATCTCGCTGACGGCTCCGAATACAGTGGGATATATGGAGATTCTGTGAGTAAGGAGACA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TATCTCGCTGACGGCTCCGAATACAGTGGGATATATGGAGATTCTGTGAGTAAGGAGACA 597
Query 601 TTAAAGGACTTCCATAGAAGAAGAGTTCAAATCTTAGCGAACTCTGGAGCCGATTTCATC 660
|||||||| ||||||||||||||||||||||||||||| || ||||||||||| | ||
Sbjct 598 TTAAAGGATTTCCATAGAAGAAGAGTTCAAATCTTAGCAAAATCTGGAGCCGACCTAATA 657
Query 661 GCATTCGAGACTATTCCAAATAAGCTCGAAGCAGAGGCGTATGCGAATCTTCTTGAGGAG 720
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 658 GCATTCGAGACTATTCCAAATAAGCTCGAAGCAGAGGCTTATGCGGATCTTCTTGAGGAG 717
Query 721 GAAGACATCAATATTCCGGCATGGTTTTCGTTCACTTCAAAGGACGGAGTCACTGTGCCA 780
||||| ||| |||||||||||||||| ||||||||||| ||||||||||||| |||||||
Sbjct 718 GAAGATATCGATATTCCGGCATGGTTCTCGTTCACTTCCAAGGACGGAGTCAGTGTGCCA 777
Query 781 CGAGGAGATTCGGTTGTAGAATGTGCGAAAGTGGCAGATTCTTGCAAGAAAGTGGTGGCC 840
||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 778 CGAGGAGATTCAGTTGTAGAATGTGCGAAAGTGGCAGATTCATGCAAGAACGTGGTGGCC 837
Query 841 ATTGGAATCAATTGTACTGCACCAAGATACATACATGATTTGATTATCTCCTTGCGCCAG 900
|||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||
Sbjct 838 ATTGGAATCAATTGTACTGCACCAAGATACATTCATGCTTTAATTATCTCCTTGCGCCAG 897
Query 901 GTGACCCGCAAACCGATCGTTGTGTACCCAAATAGCGGGGAAGTCTACGACGGTCTGAAC 960
|||| |||||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 898 ATGACACGCAAACCAATCGTTGTATACCCAAACAGCGGGGAAGTCTACGACGGTCTGAAC 957
Query 961 AAGAAATGGATTAAGTCAGAGGGAGAGTCAGAGGAGGATTTTGTGTCGTACGTGAGTAAA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AAGAAATGGATTAAGTCAGAGGGAGAGTCAGAGGAGGATTTTGTGTCGTACGTGAGTAAA 1017
Query 1021 TGGAGAGATGCAGGAGCATCTCTGTTTGGAGGATGTTGTCGGACTACTCCAAACACCATC 1080
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TGGAGAGATGCAGGAGCTTCTCTGTTTGGAGGATGTTGTCGGACTACTCCAAACACCATC 1077
Query 1081 AGAGCCATTGCTAAAGTTCTCTCCGACGAATCTCCCGCAGCATCAAAACCCAAATTCCGG 1140
|||||||||||||||||||||||||||||| || | ||||||||||||||||||||| ||
Sbjct 1078 AGAGCCATTGCTAAAGTTCTCTCCGACGAACCTTCTGCAGCATCAAAACCCAAATTCGGG 1137
Query 1141 CAGTAGA 1147
|| ||||
Sbjct 1138 CAATAGA 1144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56274810945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5