BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479793
Length=496
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22820.1 | Symbols: | allergen-related | chr3:8073271-80741... 619 6e-177
> AT3G22820.1 | Symbols: | allergen-related | chr3:8073271-8074138
REVERSE LENGTH=581
Length=581
Score = 619 bits (335), Expect = 6e-177
Identities = 411/447 (92%), Gaps = 8/447 (2%)
Strand=Plus/Plus
Query 1 TGTCTCTTTGACTTTGGACCACTTTACCCGAAATTCTTAAACCTAAAGAAGAAAAA-ACT 59
||||||||||||||||||||||||||||| |||||| ||||||||||| | ||||| |||
Sbjct 1 TGTCTCTTTGACTTTGGACCACTTTACCCAAAATTCCTAAACCTAAAG-ACAAAAACACT 59
Query 60 CCTCACCGGTCCTGCCTAATGGGCGTCGTCCTCCCAACTCTCATCGTATATGCTTTCCTT 119
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 60 CCTCACCGGTCCTGGCTAATGGGCGTCGTCCTCCCAACTCTCATCGTTTATGCTTTCCTT 119
Query 120 CTCCTT-TTCTCGTTGTCCTCCGCCGCCTCTCTTCAACGTCTCAGTGGAGGGCTTGGGCA 178
|| ||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 120 CT-CTTCTTCTCGTCGTCCTCCGCCGCCTCTCTTCAACGTCCCAGTGGAGGGCTTGGGCA 178
Query 179 GGGGAAGAAGGAGACAGTTAGGTTGGGTTTACCGGGTCAGATCGTAGATCAGAAGCGGTT 238
|||||||||||||| || ||||| |||||||||||||||||| |||||||||||||||||
Sbjct 179 GGGGAAGAAGGAGATAGCTAGGTCGGGTTTACCGGGTCAGATTGTAGATCAGAAGCGGTT 238
Query 239 AGGCGGCGGGCCTGGCTCGGCGCCTCCGATGTGTAGATTGAAGTGCGGGAAGTGTGAGCC 298
| | || || |||||||||| |||||||||||||||||||||||| ||||| ||||||||
Sbjct 239 A-G-GG-GGACCTGGCTCGGTGCCTCCGATGTGTAGATTGAAGTGTGGGAAATGTGAGCC 295
Query 299 GTGTAAAGCAGTTCATGTTCCGGTTCAACCAGGTCTAATTGCGCCATTGGAGTACTACCC 358
|||||||||||||| |||||| ||||||||||||| ||| |||| ||||||| |||||
Sbjct 296 TTGTAAAGCAGTTCACGTTCCGATTCAACCAGGTCTGATTATGCCACTGGAGTATTACCC 355
Query 359 TGAAGCTTGGCGCTGCAAGTGTGGCAACAAACTCTTCATGCCCTAAACCCAAAAACCGAA 418
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 356 TGAAGCTTGGCGCTGCAAGTGTGGCAACAAACTCTTCATGCCCTAAAACCAAAAACAGAT 415
Query 419 CCTCATGACCTAACTTAATTT-TTCTT 444
| |||||||||||||||||| |||||
Sbjct 416 CTTCATGACCTAACTTAATTAATTCTT 442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23660283237
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5