BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479794
Length=1523
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22830.1 | Symbols: AT-HSFA6B, HSFA6B | heat shock transcrip... 2098 0.0
> AT3G22830.1 | Symbols: AT-HSFA6B, HSFA6B | heat shock transcription
factor A6B | chr3:8078820-8081051 FORWARD LENGTH=1538
Length=1538
Score = 2098 bits (1136), Expect = 0.0
Identities = 1423/1552 (92%), Gaps = 57/1552 (4%)
Strand=Plus/Plus
Query 1 CTCTCTCTCTATCTGCAAATTTTCCAAAGTTGCATCCTTTCAATTTTCA---CT-TCT-- 54
||||| |||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 10 CTCTCCCTCTATCTGCAAATTTTCCAAAGTTGCATCCTTTCAATTTCCACTCCTCTCTAA 69
Query 55 T-T--CT-A-A---T-CCA--ATT-C--A--CA-ttttttttGTGAATTATTTGAAACCC 97
| | | | | | ||| ||| | | || ||||||||||||||||||| ||||||
Sbjct 70 TATAATTCACATTTTCCCACTATTGCTGATTCATTTTTTTTTGTGAATTATTTCAAACCC 129
Query 98 AC-TTCAGAAA-CTTTGTTTAAATTTGAAACCATGGATCCATCATTTAGATTCATTAAAG 155
|| | | ||| |||||||||||||| ||||||||||||| |||||||| ||||||||||
Sbjct 130 ACATAAAAAAATCTTTGTTTAAATTTAAAACCATGGATCCTTCATTTAGGTTCATTAAAG 189
Query 156 AGGAGTTTCCTACTGGATTCAGTGATTCTCCATCACCACCATCTTCTTCTTCTTCCTCAT 215
||||||||||| ||||||||||||||||||||||||||||| |||||||| | ||||
Sbjct 190 AGGAGTTTCCTGCTGGATTCAGTGATTCTCCATCACCACCA---TCTTCTTC-T--TCAT 243
Query 216 ACCTTTATTCATCTTCCATGGCTGAAGCAGCCCTATATGATCCAACAACATTGAGCTATC 275
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 244 ACCTTTATTCATCTTCCATGGCTGAAGCAGCCATAAATGATCCAACAACATTGAGCTATC 303
Query 276 CACAACCAATAGAAGGTCTCCATGAATCTGGGCCACCTCCATTTTTGACAAAGACATATG 335
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 304 CACAACCATTAGAAGGTCTCCATGAATCAGGGCCACCTCCATTTTTGACAAAGACATATG 363
Query 336 ACTTGGTAGAAGATTCAAGAACCAATCATGTAGTGTCTTGGAGCAAATCCAATAATAGCT 395
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 364 ACTTGGTGGAAGATTCAAGAACCAATCATGTCGTGTCTTGGAGCAAATCCAATAACAGCT 423
Query 396 TCATTGTTTGGGATCCACAAGCTTTTTCCATCACTCTCCTCCCCAGATTCTTCAAGCACA 455
||||||| ||||||||||| || ||||| | |||||||| |||||||||||||||||||
Sbjct 424 TCATTGTCTGGGATCCACAGGCCTTTTCTGTAACTCTCCTTCCCAGATTCTTCAAGCACA 483
Query 456 ATAACTTCTCCAGTTTTGTCCGCCAGCTCAACACATATGGTTTCAGAAAGGTGAATCCGG 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 ATAACTTCTCCAGTTTTGTCCGCCAGCTCAACACATATGGTTTCAGAAAGGTGAATCCGG 543
Query 516 ATCGATGGGAGTTTGCAAATGAAGGGTTTCTAAGAGGGCAAAAGCATCTCCTTAAGAACA 575
|||| |||||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 544 ATCGGTGGGAGTTTGCAAACGAAGGGTTTCTTAGAGGGCAAAAGCATCTCCTCAAGAACA 603
Query 576 TAAGGAGAAGAAAAACAAGTAACAATAGTAATCAACTGCAACAACCTCAAAGTTCTGAAC 635
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 604 TAAGGAGAAGAAAAACAAGTAATAATAGTAATCAAATGCAACAACCTCAAAGTTCTGAAC 663
Query 636 AACAATCTCTAGACAATTTTTGCATAGAAGTTGGTAGGTATGGTCTAGATGGAGAGATGG 695
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 664 AACAATCTCTAGACAATTTTTGCATAGAAGTGGGTAGGTACGGTCTAGATGGAGAGATGG 723
Query 696 ACAGCCTAAGGCGAGACAAACAAGT-TCTGATGATGGAGCTAGTGAGACTGAGACAACAA 754
||||||||||||||||||| ||||| | |||||||||||||||||||||| ||||| |||
Sbjct 724 ACAGCCTAAGGCGAGACAAGCAAGTGT-TGATGATGGAGCTAGTGAGACTAAGACAGCAA 782
Query 755 CAACAAAGCACCAAAATGTATCTCACTTTGATTGAAGAGAAGCTGAAGAAGACGGAATCG 814
|||||||||||||||||||||||||| ||||||||||||||||| |||||||| || ||
Sbjct 783 CAACAAAGCACCAAAATGTATCTCACATTGATTGAAGAGAAGCTCAAGAAGACCGAGTCA 842
Query 815 AAACAACAACAAATGATGGGCTTCCTTGCCCGTGCAATGCAGAATCCAGATTTTATTCAG 874
|||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 843 AAACAAAAACAAATGATGAGCTTCCTTGCCCGCGCAATGCAGAATCCAGATTTTATTCAG 902
Query 875 CAGCTCGTAGAGCAGAAGGAAAAGAGGAAGGAGATAGAAGAGGCCATCAGCAAGAAGAGA 934
||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 903 CAGCTAGTAGAGCAGAAGGAAAAGAGGAAAGAGATCGAAGAGGCGATCAGCAAGAAGAGA 962
Query 935 CAAAGACCGATCGATCAAGGGAAAAGAAATGTTGTTAATGTGGGAGATTATGATGATGCA 994
|||||||||||||||||||| ||||||||||| | || | | ||||| ||||| |
Sbjct 963 CAAAGACCGATCGATCAAGGAAAAAGAAATGTGG--AA-G----A--TTATGGTGATGAA 1013
Query 995 AGTGGTTATGGGAATGATGCTGCAGCCTCAGCCTCAGCCTCAGCCTCGGCTTTTCTTGAT 1054
||||||||||||||||||| |||||||||| ||||||| | | | || | |
Sbjct 1014 AGTGGTTATGGGAATGATGTTGCAGCCTCATCCTCAGCAT-----T-GA-TTG----G-T 1061
Query 1055 ATGAGTCAAGAA-A--CATATGGAAACATGTCTGAATTCGAGATGTCGGAGTTGGACAAA 1111
|||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 ATGAGTCAGGAATATACATATGGAAACATGTCTGAATTCGAGATGTCGGAGTTGGACAAA 1121
Query 1112 CTTGCTATGCACATTCAAGGACTTGGAGATCATTCCAGTACTAGGGAAGAAGTCTTGAAT 1171
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1122 CTTGCTATGCACATTCAAGGACTTGGAGATAATTCCAGTGCTAGGGAAGAAGTCTTGAAT 1181
Query 1172 GTGGAAAAAAGAAATGATGAGGAAGAAGAAGAAGATCAACAACAAGGGTACCAAAAGGAG 1231
||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1182 GTGGAAAAAGGAAATGATGAGGAAGAAGTAGAAGATCAACAACAAGGGTACCATAAGGAG 1241
Query 1232 AACAAGGAGATTTATGGTGAAGGTTTTTGGGAAGATTTGTTAAATGAAGGTCAAAATTTT 1291
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 AACAATGAGATTTATGGTGAAGGTTTTTGGGAAGATTTGTTAAATGAAGGTCAAAATTTT 1301
Query 1292 GATTTTGAAGGAGATCAAGAAAATGTTGATGTGTTAATTGAGCAACTTGGTTATTTGGGT 1351
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1302 GATTTTGAAGGAGATCAAGAAAATGTTGATGTGTTAATTCAGCAACTTGGTTATTTGGGT 1361
Query 1352 TCTAGTTCACACACTAGTTAAGAAGAAATTGAAATGATGACTACTTTAAGCATTTAAATC 1411
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1362 TCTAGTTCACACACTAATTAAGAAGAAATTGAAATGATGACTACTTTAAGCATTTGAATC 1421
Query 1412 AACTTGTTTCCTCTTAGTAATTTGGCTTTGTTTCAATTAAGTGAGTCGTGGTCTAACTTA 1471
|||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1422 AACTTGTTTCCTATTAGTAATTTGGCTTTGTTTCAATCAAGTGAGTCGTGGACTAACTTA 1481
Query 1472 TTGAATTTGGGGGTTAAATCTGTTACTTATTTTTGGAAATAAAATTGCTTTT 1523
|||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1482 TTGAATTTGGGGGTTAAATCCGTTTCTTATTTTTGGAAATAAAATTGCTTTT 1533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75150215865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5