BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479799
Length=1596
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22890.1 | Symbols: APS1 | ATP sulfurylase 1 | chr3:8112723-... 2429 0.0
AT4G14680.1 | Symbols: APS3 | Pseudouridine synthase/archaeosin... 1184 0.0
> AT3G22890.1 | Symbols: APS1 | ATP sulfurylase 1 | chr3:8112723-8114992
FORWARD LENGTH=1764
Length=1764
Score = 2429 bits (1315), Expect = 0.0
Identities = 1509/1599 (94%), Gaps = 27/1599 (2%)
Strand=Plus/Plus
Query 1 ACTATAAACTCTATAAAAACCAATTTTCATTTCCAATTGAATTGGTAACAAACCAAATCT 60
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1 ACTATAAACTCTATAAAAACCAATTTTCACTTCCAATTGAATTGGGAACAAACCAAATCT 60
Query 61 CTCTCT-TCTCTATTTGAGCCAAAAGCTTGAAGCAGCCATTAGCCTAA-GAAACCTTCAA 118
|| ||| |||| | || || ||||||||||||||| |||||||| ||||||||||
Sbjct 61 CTATCTCTCTCCA-TT-AG-----AGCTTGAAGCAGCCA-TAGCCTAACAAAACCTTCAA 112
Query 119 CAATGGCTTCCATGGCTGCAATCTTAAGCAAAACTCCATTCCTCTCTCAACCACTCACCA 178
|||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 113 CAATGGCTTCAATGGCTGCCGTCTTAAGCAAAACTCCATTCCTCTCTCAACCACTAACCA 172
Query 179 AACCATCTCCAATCTCCGATCTCCCCTTCGCCGCCGTATCCTTTCCTTCCAAATCCCTAC 238
|| ||||||||| ||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 173 AATCATCTCCAAACTCCGATCTCCCCTTCGCCGCGGTTTCCTTCCCTTCCAAATCCCTAC 232
Query 239 GCCGCCGC-AACGGATCAATCCGAGCCGGCTTAATCGCGCCTGACGGTGGTAAGCTTGTA 297
|||||||| | ||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 233 GCCGCCGCGTA-GGATCAATCCGAGCCGGATTAATCGCTCCCGACGGTGGTAAGCTTGTA 291
Query 298 GAGCTCATCGTGGAAGAGCCAAAGCGACGGGAGAAGAAACACGAGGCGGCGGAGCTGCCA 357
|||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 292 GAGCTCATCGTGGAAGAGCCAAAGCGGCGAGAGAAGAAACACGAGGCGGCGGATTTGCCA 351
Query 358 CGTGTTGAGCTGACGACGATTGACTTGCAATGGATGCATGTATTAAGCGAAGGCTGGGCA 417
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 CGTGTTGAGCTGACGGCGATTGACTTGCAATGGATGCATGTATTAAGCGAAGGCTGGGCA 411
Query 418 AGTCCACTCGGAGGTTTCATGAGAGAATCCGAGTTCCTCCAAACTCTTCATTTTAACTCA 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 AGTCCACTCGGAGGTTTCATGAGAGAATCCGAGTTCCTCCAAACTCTTCATTTTAACTCG 471
Query 478 CTACGTCTTGACGACGGCTCCGTCGTTAATATGTCGGTGCCTATTGTTCTCGCTATTGAC 537
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 472 CTACGTCTTGACGACGGCTCCGTCGTTAACATGTCCGTGCCTATTGTTCTCGCTATTGAC 531
Query 538 GATGAGCAAAAAGCACGTATCGGCGAGTCTAAACGTGTCGCTCTTTTTGATTCCGATGGT 597
||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 532 GATGAACAAAAAGCACGTATCGGCGAGTCTACACGTGTCGCTCTTTTCAATTCCGATGGT 591
Query 598 AATCCCGTCGCTATCCTCAGCGACATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATA 657
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 592 AACCCCGTCGCTATCCTCAGCGATATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATA 651
Query 658 GCTAGAACATGGGGTACGACGGCTCCAGGTTTGCCTTATGTAGATGAGGCGATAACTAAT 717
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 652 GCTAGAACATGGGGTACGACGGCTCCAGGTTTGCCTTACGTAGACGAGGCGATAACTAAT 711
Query 718 GCTGGAAACTGGCTTATTGGGGGTGATCTTGAGGTTCTTGAGCCAGTTAAGTACAATGAT 777
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 712 GCTGGAAACTGGCTCATTGGGGGTGATCTTGAGGTTCTTGAGCCAGTGAAGTACAATGAT 771
Query 778 GGGCTTGATCGTTTCAGACTTTCGCCTGCTGAGCTACGTAAAGAGTTGGAGAAGCGTAAT 837
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 772 GGGCTTGATCGTTTCAGGCTTTCGCCTGCTGAGTTACGTAAAGAGTTGGAGAAGCGTAAT 831
Query 838 GCGGATGCTGTGTTTGCTTTCCAGCTGAGGAATCCGGTTCACAATGGTCATGCTCTTCTT 897
|||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 832 GCGGATGCGGTGTTTGCTTTCCAGCTGAGGAATCCTGTTCATAATGGTCATGCTCTTCTT 891
Query 898 ATGACTGATACTCGTAGGAGACTTCTTGAGATGGGATATAAAAACCCTATCCTTTTGCTT 957
||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 892 ATGACTGATACTCGTAGGAGACTTCTTGAGATGGGTTACAAAAACCCTATTCTTTTGCTT 951
Query 958 CATCCGTTAGGAGGGTTCACAAAGGCTGATGATGTTCCTCTAGACTGGAGGATGAAGCAA 1017
||||||||||| ||||| ||||||||||||||||||||| |||| |||||||||||||||
Sbjct 952 CATCCGTTAGGTGGGTTTACAAAGGCTGATGATGTTCCTTTAGATTGGAGGATGAAGCAA 1011
Query 1018 CACGAGAAGGTGCTAGAGGATGGTGTTCTTGATCCAGAGACTACAGTGGTTTCGATATTC 1077
||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1012 CACGAGAAGGTTCTAGAGGATGGTGTTCTCGATCCGGAGACTACAGTGGTTTCGATATTC 1071
Query 1078 CCGTCTCCTATGCATTACGCTGGTCCAACCGAAGTGCAGTGGCACGCAAAGGCTAGAATC 1137
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 CCGTCACCTATGCATTACGCTGGTCCAACCGAAGTGCAGTGGCACGCAAAGGCTAGAATC 1131
Query 1138 AATGCTGGTGCTAACTTTTACATTGTGGGTCGTGATCCAGCCGGGATGGGTCATCCAGTA 1197
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1132 AATGCTGGTGCTAACTTTTACATTGTGGGTCGTGATCCTGCTGGGATGGGTCATCCAGTA 1191
Query 1198 GAAAAACGTGATCTTTACGATGCTGATCATGGAAAGAAAGTACTAAGCATGGCACCAGGA 1257
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 GAGAAACGTGATCTTTACGATGCTGATCATGGAAAGAAAGTACTAAGCATGGCACCAGGA 1251
Query 1258 CTCGAACGACTCAACATCCTTCCATTCAGGGTTGCTGCATATGACAAGACACAAGGCAAG 1317
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1252 CTCGAACGACTCAACATCCTTCCTTTCAGGGTTGCTGCATATGACAAGACGCAAGGCAAG 1311
Query 1318 ATGGCTTTCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGATG 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 ATGGCTTTCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGATG 1371
Query 1378 CGCACATTGGCAAAGAACAACGAAAACCCTCCTGACGGTTTCATGTGCCCAGGTGGATGG 1437
||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 1372 CGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTATGTGCCCAGGTGGATGG 1431
Query 1438 AAAGTTCTGGTGGATTACTATGAGAGCTTGACTCCAGCAGGTAATGGTAGACTACCAGAA 1497
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1432 AAAGTTCTGGTGGATTACTATGAGAGCTTGACTCCGGCGGGTAATGGTAGACTACCAGAA 1491
Query 1498 GTGGTTCCGGTTGAAGACAGAAGACAAAACTGTCTCTGCTTCGTTTCAAATTGTAACGTT 1557
||||||||||| | | | || ||||||||| || | || | ||||||||||||||
Sbjct 1492 GTGGTTCCGGT-GTA-A--GA---CAAAACTGT-TC-G-TT--T--CAAATTGTAACGTT 1537
Query 1558 TGTGTTGTGAAGCCCTTGTAGCAACAATCATTGTTGTAT 1596
|||||||||||||| ||||||||||||||||||||||||
Sbjct 1538 TGTGTTGTGAAGCC-TTGTAGCAACAATCATTGTTGTAT 1575
> AT4G14680.1 | Symbols: APS3 | Pseudouridine synthase/archaeosine
transglycosylase-like family protein | chr4:8413288-8415391
REVERSE LENGTH=1633
Length=1633
Score = 1184 bits (641), Expect = 0.0
Identities = 1037/1227 (85%), Gaps = 32/1227 (3%)
Strand=Plus/Plus
Query 259 CGAGCCGGCTTAATCGCGCCTGACGGTGGTAAGCTTGTAGAGCTCATCGTGGAAGAGCCA 318
||||| |||||||||| ||| || ||||| || ||||| || || | || || ||
Sbjct 225 CGAGCTGGCTTAATCGAGCCAGATGGTGGGAAACTTGTGGATCTTGTTGTACCGGAACC- 283
Query 319 AAG-CGACGGGAGAAGAAACACGAGGCGGCGGAGCTGCC-ACGTGTTGAG-CTGACGACG 375
|| || || |||||||||||||| |||||||| |||| | | | |||| ||||| ||
Sbjct 284 GAGACGGCGAGAGAAGAAACACGAAGCGGCGGATTTGCCGA-GAG-TGAGATTGACGGCG 341
Query 376 ATTGACTTGCAATGGATGCATGTATTAAGCGAAGGCTGGGCAAGTCCAC-TCG-GAGGTT 433
||||| ||||||||||||||||| || || ||||| ||||| ||||| | ||| | ||||
Sbjct 342 ATTGATTTGCAATGGATGCATGTGTTGAGTGAAGGTTGGGCTAGTCCTCTTCGTG-GGTT 400
Query 434 TCATGAGAGAATCCGAGTTCCTCCAAACTCTTCATTTTAACTCACT-ACGTCTTGACGAC 492
| ||||| ||||| ||||||||||||||||||||||| || | | | ||| || ||
Sbjct 401 T-ATGAGGGAATCTGAGTTCCTCCAAACTCTTCATTTCAATTTGTTGA-ATCTCGATGAT 458
Query 493 GGCTCCGTCGTTAATATGTCGGTGCCTATTGTTCTCGCTATTGACGATGAGCAAAAAGCA 552
|| || || ||||||||||| |||||||||||||| || ||||| ||| | ||||||||
Sbjct 459 GGGTCTGTTGTTAATATGTCTGTGCCTATTGTTCTTGCGATTGATGATCAACAAAAAGC- 517
Query 553 CGT-ATCGGCGAGTCTAAACGTGTCGCTCTTTTTGATTCCGATGGTAATCCCGTCGCTAT 611
| | ||||| || |||||||||||| | ||| ||||||| |||| |||||| |||||||
Sbjct 518 CCTAATCGGTGAATCTAAACGTGTCTCCCTTGTTGATTCTGATGATAATCCAATCGCTAT 577
Query 612 CCTCAGCGACATTGAGATTTATAAGCATCC-AAAGGAAGAAAGGATAGCTAGAACATGGG 670
|||| || |||||||||||||| ||||| ||| ||||| | ||||| ||||| ||||
Sbjct 578 TCTCAATGATATTGAGATTTATAAACATCCGAAA-GAAGAGCGAATAGCGAGAACTTGGG 636
Query 671 GTACGACGGCTCCAGGTTTGCCTTATGTAGATGAGGCGATAACTAATGCTGGAAACTGGC 730
||||||| || || ||||||||||||||||| ||||||||||| ||||||||| ||||||
Sbjct 637 GTACGACTGCACCGGGTTTGCCTTATGTAGAAGAGGCGATAACCAATGCTGGAGACTGGC 696
Query 731 TTATTGGGGGTGATCTTGAGGTTCTT-GAGCCAGTTAAGTACAATGATGGGCTTGATCGT 789
| ||||||||||||||||||||| || || || |||||||||||||||||||||||||||
Sbjct 697 TCATTGGGGGTGATCTTGAGGTT-TTGGAACCTGTTAAGTACAATGATGGGCTTGATCGT 755
Query 790 TTCAGACTTTCGCCTG-CTGAGCTACGTAAAGAGTTGGAGAAGCGTAATGCGGATGCTGT 848
||||| ||||| || | ||| || ||||| ||| | ||||| ||| ||||||||| ||
Sbjct 756 TTCAGGCTTTC-CCCGTTTGAACTGCGTAAGGAGCTAGAGAAACGTGGTGCGGATGCGGT 814
Query 849 GTTTGC-TTTCCAGCTGAGGAATCCGGTTCACAATGGTCATGCTCTTCTTATGACTGATA 907
||||| ||| ||||| ||||| || ||||| ||||| ||||||||||||||||||||||
Sbjct 815 CTTTGCGTTT-CAGCTTAGGAACCCAGTTCATAATGGACATGCTCTTCTTATGACTGATA 873
Query 908 CTCGTAGGAGACTTCTTGAGATGGGATATAAAAACCCTATCCTTTTGCTTCATCCGTTAG 967
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 874 CTCGTAGGAGACTTCTTGAGATGGGTTATAAAAACCCTATCCTTTTGCTTCATCCATTGG 933
Query 968 GAGGGTTCACAAAGGCTGATGATGTTCCTCTA-GACTGGAGGATGAAGCAACACGAGAAG 1026
||||||| ||||| |||||||||||||||||| | |||| | ||||| || |||||||||
Sbjct 934 GAGGGTTTACAAAAGCTGATGATGTTCCTCTAAG-CTGGCGAATGAAACAGCACGAGAAG 992
Query 1027 GTGCTAGAGGATGGTGTTCTTGATCCAGAGACTACAGTGGTTTCGATATTCCCGTCTCCT 1086
||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 993 GTGCTAGAGGATGGTGTTCTTGATCCAGAGACTACTGTGGTTTCCATATTCCCATCTCCA 1052
Query 1087 ATGCAT-TACGCTGGTCCAACCGAAGTGCAGTGGCACGCAAAGGCTAGAATCAATGCTGG 1145
|||| | || ||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 1053 ATGC-TCTATGCTGGTCCAACCGAAGTCCAATGGCACGCAAAGGCTAGGATCAATGCTGG 1111
Query 1146 TGCTAACTTTTACATTGTGGGTCGTGATCCAGCCGGGATGGGTCATCCAGTAGAAAAACG 1205
||||||||| |||||||| ||| | ||||| || || ||||||||||| || || |||||
Sbjct 1112 TGCTAACTTCTACATTGTCGGTAGGGATCCGGCTGGAATGGGTCATCCCGTGGAGAAACG 1171
Query 1206 TGATCTTTACGATGCTGATCATGGAAAGAAAGTACTAAGCATGGCACCAGGACTCGAACG 1265
|||||| |||||||||||||| || |||||||| ||||||||||| || |||||||||||
Sbjct 1172 TGATCTGTACGATGCTGATCACGGGAAGAAAGTTCTAAGCATGGCTCCTGGACTCGAACG 1231
Query 1266 ACTCAACATCCTTCCATTCAGGGTTGCTGCATATGACAAGACACAAGGCAAGATGGCTTT 1325
||||||||| ||||| |||||||||||||| || || ||||||||||| |||||||||||
Sbjct 1232 ACTCAACATTCTTCCTTTCAGGGTTGCTGCGTACGATAAGACACAAGGAAAGATGGCTTT 1291
Query 1326 CTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGATGCGCA-CAT 1384
||| |||||||| ||| |||| || ||||||||||| || |||||||||||| | | |||
Sbjct 1292 CTTTGATCCCTCAAGGGCTCAGGACTTCTTGTTCATTTCTGGCACTAAGATGAG-AGCAT 1350
Query 1385 TGGCAAAGAACA-ACGAAAACCCTCCTGACGG-TTTCATGTGCCCAGGTGGATGGAAAGT 1442
|||||||||||| | || ||||| || || || ||| |||||||| || || ||||||||
Sbjct 1351 TGGCAAAGAACAGA-GAGAACCCACCAGATGGATTT-ATGTGCCCTGGAGGCTGGAAAGT 1408
Query 1443 TCTGGTGGATTACTATGAGAGCTTGAC 1469
|| ||||||||||| || || |||||
Sbjct 1409 CCTTGTGGATTACTACGACAGTTTGAC 1435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78814855650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5