BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479802
Length=764
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22930.1 | Symbols: CML11 | calmodulin-like 11 | chr3:812408... 1022 0.0
AT4G14640.1 | Symbols: CAM8, AtCML8 | calmodulin 8 | chr4:83977... 494 6e-139
> AT3G22930.1 | Symbols: CML11 | calmodulin-like 11 | chr3:8124083-8125931
REVERSE LENGTH=821
Length=821
Score = 1022 bits (553), Expect = 0.0
Identities = 627/662 (95%), Gaps = 8/662 (1%)
Strand=Plus/Plus
Query 106 caacaacaacaacaacaacaacaacaacaaGAACTGACGCAAGAACAGATAATGGAGTTT 165
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 145 CAACAACAACAACAACAACAACAACAACAAGAACTGACGCAAGAACAGATAATGGAGTTC 204
Query 166 AAAGAGGCCTTTTGTCTCTTCGACAAAGATGGTGATGGTTGCATCACTGCTGATGAACTT 225
|||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 205 AAAGAGGCTTTTTGTCTATTCGACAAAGATGGTGATGGATGCATCACTGCTGATGAACTT 264
Query 226 GCCACTGTGATCCGCTCATTGGATCAGAACCCGACCGAACAAGAACTTCGAGATATGATC 285
|||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||
Sbjct 265 GCCACTGTGATCCGCTCATTGGATCAGAACCCTACCGAGCAAGAACTTCAAGATATGATC 324
Query 286 ACTGAGATCGACTCTGATGGCAACGGCACCATCGAATTCTCGGAGTTTCTCAACCTCATG 345
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 325 ACTGAGATCGACTCCGATGGCAACGGCACCATCGAATTTTCGGAGTTTCTCAACCTCATG 384
Query 346 GCTAACCAAATCCAGGAAACTGATGCAGATGAAGAGCTGAAAGAAGCATTCAAAGTGTTT 405
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 GCTAACCAACTCCAGGAAACTGATGCAGATGAAGAGCTGAAAGAAGCATTCAAAGTGTTT 444
Query 406 GACAAAGACCAAAATGGTTACATATCTGCCAGTGAGTTGAGGCATGTGATGATCAATCTT 465
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 445 GACAAAGACCAAAATGGTTACATCTCTGCCAGTGAGTTGAGGCATGTGATGATTAATCTT 504
Query 466 GGGGAGAAGCTTACAGATGAAGAGGTTGATCAAATGATAAAGGAGGCAGATTTGGATGGT 525
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 505 GGGGAGAAGCTAACAGATGAAGAGGTTGATCAAATGATAAAAGAGGCAGATTTGGATGGT 564
Query 526 GATGGCCAAGTCAATTATGATGAATTTGTCAGGATGATGATGACCAATGGTTAAA---TC 582
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 565 GATGGCCAAGTCAATTATGATGAATTTGTCAGGATGATGATGATCAATGGTTAAAAAATC 624
Query 583 GTAAATCAATTTTACTCTCCATTGTATTATTATTTTTATAAATTGGTTTAATCCtttttt 642
||| ||| ||||||||| ||||||||||| |||| ||||||| ||||||||||| ||
Sbjct 625 CTAA-TCATTTTTACTCTTCATTGTATTATC-TTTT-ATAAATTTGTTTAATCCTTCTTC 681
Query 643 ttCTTTTCGGAATATCGCATTTTAAATTAATTTTAAGCTTTTATATTCAATTGAACAAGT 702
|| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 682 TT-TTTTCGGAATATCGCATTATAAATTAATCTTAAGCTTTTATATTCAATTGAACAAGT 740
Query 703 AGATTTTTCTTTT-GGCATGTGAATTCTTAATATGTATCTGATGTATAGTGTGTTTCTTT 761
||||||||||||| ||| |||| ||||||| |||||||||||||||||||||||||||||
Sbjct 741 AGATTTTTCTTTTAGGCGTGTGGATTCTTACTATGTATCTGATGTATAGTGTGTTTCTTT 800
Query 762 CA 763
||
Sbjct 801 CA 802
Score = 204 bits (110), Expect = 1e-51
Identities = 132/142 (93%), Gaps = 3/142 (2%)
Strand=Plus/Plus
Query 1 ACTTCAAAGCTTTTAAG--ctctctc-tctcttcttttctcttctcttctcttctcttct 57
|||||||||||||| || ||||||| |||||||| |||||||||||||||||||||| |
Sbjct 1 ACTTCAAAGCTTTTCAGCTCTCTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTTT 60
Query 58 ctctcAGAAGAATACTACTAAGCAAGTTTTAATTGGATGGAAGAAACTcaacaacaacaa 117
||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 CTCTCTGAAGAAGACTACTAAGCAAGTTTTAATTGGATGGAAGAAATTCAACAACAACAA 120
Query 118 caacaacaacaacaacaaGAAC 139
|||||||||||||||||| |||
Sbjct 121 CAACAACAACAACAACAACAAC 142
> AT4G14640.1 | Symbols: CAM8, AtCML8 | calmodulin 8 | chr4:8397712-8400076
FORWARD LENGTH=624
Length=624
Score = 494 bits (267), Expect = 6e-139
Identities = 385/441 (87%), Gaps = 11/441 (2%)
Strand=Plus/Plus
Query 131 aacaaGAACTGACGCAAGAACAGAT-AATGGAGTTTAAAGAGGCCTTTTGTCTCTTCGAC 189
||| || |||||| |||| ||||| | | ||||| ||||| ||||||||||||||||||
Sbjct 97 AAC-AGCACTGACAAAAGATCAGATCACT-GAGTTCAAAGAAGCCTTTTGTCTCTTCGAC 154
Query 190 AAAGATGGTGATGGTTGCATCACTGCT-GATGAACTTGCCACTGTGATCCGCTCATTGGA 248
||||| || || ||||| || || | | || |||||||| || |||||||| || |||||
Sbjct 155 AAAGACGGCGACGGTTGTATAAC-GGTGGAAGAACTTGCAACAGTGATCCGTTCGTTGGA 213
Query 249 TCAGAACCCGACCGAACAAGAACTTCGA-GATATGATCACTGAGATCGACTCTGATGGCA 307
|||||| ||||| ||||||||||||| | ||||| ||||||||||| || |||||| |||
Sbjct 214 TCAGAATCCGACAGAACAAGAACTTC-ATGATATCATCACTGAGATTGATTCTGATAGCA 272
Query 308 ACGGCACCATCGAATTCT-CGGAGTTTCTCAACCTCATGGCTAACCAAA-TCCAGGAAAC 365
|||||||||| ||||| | | |||||||||||||||||||| || ||| | |||||||
Sbjct 273 ACGGCACCATTGAATT-TGCTGAGTTTCTCAACCTCATGGCCAA-AAAACTTCAGGAAAG 330
Query 366 TGATGCAGATGAAGAGCTGAAAGAAGCATTCAAAGTGTTTGACAAAGACCAAAATGGTTA 425
|||||| || |||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 331 TGATGCGGAGGAAGAGCTGAAAGAAGCATTCAAAGTCTTTGACAAAGACCAAAATGGATA 390
Query 426 CATATCTGCCAGTGAGTTGAGGCATGTGATGATCAATCTTGGGGAGAAGCTTACAGATGA 485
||| ||||||||||||||||| ||||| ||||| ||||| || || ||||| ||||||||
Sbjct 391 CATCTCTGCCAGTGAGTTGAGTCATGTAATGATAAATCTAGGAGAAAAGCTAACAGATGA 450
Query 486 AGAGGTTGATCAAATGATAAAGGAGGCAGATTTGGATGGTGATGGCCAAGTCAATTATGA 545
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 AGAAGTTGAACAAATGATAAAGGAGGCAGATTTGGATGGTGATGGCCAAGTCAATTATGA 510
Query 546 TGAATTTGTCAGGATGATGAT 566
||||||||||| |||||||||
Sbjct 511 TGAATTTGTCAAGATGATGAT 531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37123034633
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5