BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479804
Length=2081
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22960.1 | Symbols: PKP1, PKP-ALPHA | Pyruvate kinase family... 3258 0.0
> AT3G22960.1 | Symbols: PKP1, PKP-ALPHA | Pyruvate kinase family
protein | chr3:8139235-8141985 FORWARD LENGTH=2139
Length=2139
Score = 3258 bits (1764), Expect = 0.0
Identities = 1994/2102 (95%), Gaps = 27/2102 (1%)
Strand=Plus/Plus
Query 1 AACACTCTCACACTTCGATATCTCCGCCTTC-TTCTCCTCTGAGCCAACTGTCCTTCGAT 59
||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 27 AACACTCTCACACTTCGATATCTCCGCCTTCATTCTCCTCAGAGCCAACTGTCCTGAGAT 86
Query 60 TTCGATTTCGATTTCTCCGATCTCTCTCCCTCCGGCACCGGCGAAACTATGTCTCAGTCT 119
||||||||||||||||||||||||||| |||||| | |||||||||| ||||||||||||
Sbjct 87 TTCGATTTCGATTTCTCCGATCTCTCTTCCTCCGTCGCCGGCGAAACCATGTCTCAGTCT 146
Query 120 ATCCAATTCTCCACTCCTTCACGCActcctcaccttctcaatctccctcactcacaattc 179
|| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 147 ATTCAATTCTCCACTCCTTCACACACTCCTCACCTTCTCCATCTCCCTCACTCACAATTC 206
Query 180 aaccgtcctctctcctctatctccttccGTCGTTTCCCTCTAACAACCATCAAATACACT 239
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 207 AACCGTCCTCTCTCCTCTATCTCCTTCCGTCGCTTCCCTCTAACAACCATCAAATACACT 266
Query 240 TCCATCAGAGCCTCCTCTTCGTC-TCCGTCGCCTTCACCGGATCTCGATTCATCATCATC 298
||||||||||||| | | ||||| | | || ||||||||||||||||||||||| || ||
Sbjct 267 TCCATCAGAGCCT-C-C-TCGTCAT-CATCTCCTTCACCGGATCTCGATTCATCGTCCTC 322
Query 299 CTCGTCGTCGTCGCAGGTACTTCTCTCACCTAACGGTACTGGTGCTGTGAAGTCTGATGA 358
|| || || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 ATCATCATCCTCGCAAGTACTTCTCTCACCTAACGGTACTGGTGCTGTGAAGTCTGATGA 382
Query 359 GAGATCCGTTGTAGCTACGGCTGTTACGACGGATACGGCTGGGATTGAGGTTGATACGGT 418
|||||||||||| |||||||| |||||||| |||||| ||||||||||||||||||| ||
Sbjct 383 GAGATCCGTTGTCGCTACGGCGGTTACGACTGATACGTCTGGGATTGAGGTTGATACTGT 442
Query 419 GACGGAAGCGGAGCTTAAGGAGAATGGATTTAGAAGTACGAGAAGGACGAAGCTGATTTG 478
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 443 GACGGAAGCTGAGCTTAAGGAGAATGGATTTAGAAGTACGAGGAGGACGAAGCTGATCTG 502
Query 479 TACGATCGGACCGGCTACGTGTGGATTTGAGCAGCTTGAGGCGCTTGCTGTGGGAGGTAT 538
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 503 TACGATCGGACCGGCGACTTGTGGATTTGAGCAGCTTGAGGCGCTTGCTGTGGGAGGTAT 562
Query 539 GAACGTGGCGCGGCTTAATATGTGTCACGGTACTCGCGATTGGCACCGCGGTGTGATTCG 598
||| ||||| |||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 563 GAATGTGGCAAGGCTTAATATGTGTCACGGTACGCGTGATTGGCACCGCGGTGTGATTCG 622
Query 599 TAGTGTTCGTAGGCTTAATGAGGAGAAAGGCTTTGCGGTTGCTATTATGATGGATACTGA 658
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 TAGTGTTCGGAGGCTTAATGAGGAGAAAGGCTTTGCGGTTGCTATTATGATGGATACTGA 682
Query 659 AGGTAGTGAGATTCATATGGGAGATCTTGGTGGTGAAGCTTCAGCTAAAGCAGAGGATGG 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 AGGTAGTGAGATTCATATGGGAGATCTTGGTGGTGAAGCTTCAGCTAAAGCAGAGGATGG 742
Query 719 TGAGATTTGGACTTTCACTGTTAGAGCTTTTGATTCTTCTCGTCCTGAACGTACCATTAG 778
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 TGAGGTTTGGACTTTCACTGTTAGAGCTTTTGATTCTTCTCGTCCTGAACGTACCATTAG 802
Query 779 TGTGAGCTACGATGGTTTCGCTGAAGATGTAAGAGTTGGGGATGAACTTCTAGTTGATGG 838
||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 803 TGTTAGCTACGATGGTTTCGCTGAAGATGTAAGAGTTGGGGATGAACTTTTGGTTGATGG 862
Query 839 TGGAATGGTGAGATTTGAAGTGATTGAGAAGATTGGTCCTGATGTTAAGTGTCTATGTAC 898
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 TGGGATGGTGAGATTTGAAGTGATTGAGAAGATTGGTCCTGATGTTAAGTGTCTATGTAC 922
Query 899 CGATCCCGGATTGTTGCTTCCTCGAGCTAACTTGACGTTTTGGAGAGATGGAAGTCTTGT 958
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 CGATCCTGGATTGTTGCTTCCTCGAGCTAACTTGACGTTTTGGAGAGATGGAAGTCTTGT 982
Query 959 ACGAGAGCGTAATGCCATGCTTCCAACTATTTCTTCCAAGGATTGGTTGGATATTGATTT 1018
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 983 ACGAGAGCGTAATGCCATGCTTCCAACAATTTCTTCCAAGGACTGGTTGGATATTGATTT 1042
Query 1019 TGGAATTGCTGAAGGTGTGGATTTCATTGCTGTATCGTTTGTCAAGTCGGCTGAAGTAAT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1043 TGGAATTGCTGAAGGTGTGGATTTCATTGCTGTATCGTTTGTCAAGTCGGCTGAAGTCAT 1102
Query 1079 TAATCACCTTAAAAGTTATCTTGCTGCTCGTTCCCGTGGAGGGGAAATTGGAGTGATTGC 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 TAATCACCTTAAAAGTTATCTTGCTGCTCGTTCCCGTGGAGGGGAAATTGGAGTGATTGC 1162
Query 1139 AAAGATCGAGAGTATCGATTCATTGACCAATTTGGAAGAAATTATTCTAGCATCAGATGG 1198
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1163 AAAGATCGAGAGTATCGATTCACTGACCAATTTGGAAGAAATTATTCTAGCATCAGATGG 1222
Query 1199 AGCCATGGTTGCAAGAGGAGATCTAGGAGCTCAGATACCTCTTGAACAAGTTCCAGCAGC 1258
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1223 GGCCATGGTTGCAAGAGGAGATCTGGGAGCTCAGATACCTCTTGAGCAAGTTCCAGCAGC 1282
Query 1259 TCAACAGAGAATCGTCCAAGTCTGCAGAGGGCTGAACAAACCTGTCATCGTCGCTTCACA 1318
||||||||||||||||||||| ||||||| || |||||||| ||||| |||||||||||
Sbjct 1283 TCAACAGAGAATCGTCCAAGTATGCAGAGCTCTTAACAAACCCGTCATTGTCGCTTCACA 1342
Query 1319 GCT-TCTGGAATCCATGATTGAGTACCCAACTCCAACCAGAGCAGAAGTCGCTGACGTGT 1377
||| | |||| |||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1343 GCTAT-TGGAGTCCATGATTGAGTACCCAACTCCAACCAGAGCAGAAGTTGCCGACGTGT 1401
Query 1378 CTGAAGCAGTAAGACAAAGATCAGACGCATTGATGCTCTCTGGAGAATCAGCTATGGGTC 1437
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1402 CTGAAGCAGTAAGACAAAGATCAGATGCATTGATGCTCTCTGGAGAATCAGCTATGGGAC 1461
Query 1438 AATTTCCAGACAAGGCGCTCACGGTTCTAAGGACTGTCAGTCTAAGAATCGAGCGATGGT 1497
|||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1462 AATTCCCAGACAAGGCGCTCACGGTTCTAAGGACTGTCAGTTTAAGAATCGAGAGATGGT 1521
Query 1498 GGAGGGAAGAGAAACGCCACGAGTCTGTGCCGCTTCAAGCCATAGGCTCTACATTTTCAG 1557
||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||
Sbjct 1522 GGAGGGAAGAGAAACGCCATGAGTCTGTACCGCTTCAAGCCATAGGCTCTTCATTTTCAG 1581
Query 1558 ACAAAATCTCAGAAGAGATCTGTAACTCTGCTGCTAAAATGGCTAACAATCTTGGAGTGG 1617
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1582 ACAAAATCTCAGAAGAGATCTGTAACTCAGCTGCTAAAATGGCTAACAATCTTGGAGTGG 1641
Query 1618 ACGCGGTTTTCGTCTACACAACAAGCGGACACATGGCGA-CATTGGTCTCACGATGTCGC 1676
||||||||||||| |||||||| |||||||||||||| | || ||||||| |||||||||
Sbjct 1642 ACGCGGTTTTCGTTTACACAACGAGCGGACACATGGC-ATCACTGGTCTCCCGATGTCGC 1700
Query 1677 CCAGACTGTCCGATCTTTGCTTTCACAACCACAACCTCAGTGAGAAGACGCTTAAACCTA 1736
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1701 CCGGACTGCCCGATCTTTGCTTTCACAACCACAACCTCAGTGAGAAGACGCTTAAACCTA 1760
Query 1737 CAATGGGGACTTATCCCATTCCGTCTCAGCTTCTCAGACGACATGGAAAGCAACTTGAAC 1796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1761 CAATGGGGACTTATCCCATTCCGTCTCAGCTTCTCAGACGACATGGAAAGCAACTTGAAC 1820
Query 1797 AAAACATTCTCGTTACTGAAATCAAGAGGTATGATAAAATCTGGTGACCTCGTGATCGCA 1856
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1821 AAAACATTCTCGTTACTGAAATCAAGAGGTATGATCAAATCTGGTGACCTCGTGATCGCA 1880
Query 1857 GTCTCAGACATGCTGCAATCAATCCAGGTAATGAACGTCCCATAATT-TCTCCCTTTTTA 1915
||||| ||||||||||||||||||||||||||||||||||| ||||| |||| |||| ||
Sbjct 1881 GTCTCGGACATGCTGCAATCAATCCAGGTAATGAACGTCCCGTAATTCTCTCTCTTTATA 1940
Query 1916 CAATTTCGCAATCCCGCAAA-GAGTGTTTTGTT----------G---CTGTTTTTAGACT 1961
|||||||||||||||||||| |||||||||||| | |||||||||||||
Sbjct 1941 CAATTTCGCAATCCCGCAAAAGAGTGTTTTGTTTCCTACTTTTGTTACTGTTTTTAGACT 2000
Query 1962 ACTCTTACATTAGATTCCAGAGGCATCGTCAACTTCGGTTTGTTAACAACAGTAATGTGT 2021
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 2001 ACTCTTACATTAGATTCCAGAGGCATCATCATCTTCGGTTTGTTAACAACAGTAATGTGT 2060
Query 2022 AAGCTTTGTTTGTAGTGT--ACTGTTTGTTTTTGGTTTTCAATAATATCAGTAATCTTCT 2079
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 2061 AAGCTTTGTTTGTAGTGTGTACTGTTTGTTTTTGGTTTTCAATAATATCAGTAATCTTAT 2120
Query 2080 TC 2081
||
Sbjct 2121 TC 2122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103162119975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5