BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479809
Length=1361
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22990.1 | Symbols: LFR | ARM repeat superfamily protein | c... 1956 0.0
> AT3G22990.1 | Symbols: LFR | ARM repeat superfamily protein |
chr3:8163950-8166345 FORWARD LENGTH=1648
Length=1648
Score = 1956 bits (1059), Expect = 0.0
Identities = 1280/1383 (93%), Gaps = 29/1383 (2%)
Strand=Plus/Plus
Query 1 GAGCAGAACAACAGAAGAATAGTTCTTGCGCTACAAAGTGGTTTAAAGAGTGAGGTTACA 60
||||||||||| |||||||||||||||||| | || |||||||| ||||||||||| |||
Sbjct 258 GAGCAGAACAATAGAAGAATAGTTCTTGCGTTGCAGAGTGGTTTGAAGAGTGAGGTGACA 317
Query 61 TGGGCGTTGAATACACTTACATTGCTTTCCTTTAAGGAAAAAGACGATATTCGACGAGAT 120
||||| ||||| |||||||| ||||||||||| ||||||||||| ||||||||| |||||
Sbjct 318 TGGGCATTGAACACACTTACGTTGCTTTCCTTCAAGGAAAAAGAAGATATTCGAAGAGAT 377
Query 121 GTCACGCCTCTTGCTAAGATATCTGGCTTGCTTGATGCACTTCTCTTAATTATAGATGAC 180
|||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 378 GTCATGCCTCTTGCTAAGATAGCTGGCTTGCTTGATGCCCTTCTCTTAATTATAGATGAT 437
Query 181 TGGCGTGACATAGCTCTTCCAAAGGATCTAACAAGAGGAGCTAGGGTTAGGACTTTAGGT 240
||||||||||||||||| |||||||| || ||||||||| |||| ||||| |||||||||
Sbjct 438 TGGCGTGACATAGCTCTCCCAAAGGACCTGACAAGAGGAACTAGAGTTAGAACTTTAGGT 497
Query 241 ACAAATGCTTCGGTTACGGGATTTGGCAATGAGTATGATGCTTTAGCCTCTATTCAACTC 300
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 498 ACAAATGCTTCAGTTACGGGATTTGGCAATGAGTATGATGCTCTAGCCTCTATTCAACCC 557
Query 301 CCTGGATCTGGCATTGGTTCTTCAGCTGCTGAGGGATTAGGAAAAAAGAGCGGTGGAAAA 360
|||||||| || ||||||||||| |||||||||| |||||||||||||||| ||| |||
Sbjct 558 CCTGGATCCGGGATTGGTTCTTCTGCTGCTGAGGCATTAGGAAAAAAGAGCACTGGTAAA 617
Query 361 CATCAGTCATCTCAGTGGTGGATGGAAGAGGATGGTTTGTTTAATCTAGACGATGAAGGG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 CATCAGTCATCTCAGTGGTGGATGGAAGAGGATGGTTTGTTTAATCTAGACGATGAAGGG 677
Query 421 AGATCAGAGAAACAAATGTGCGCCATTGCTGCATCTAACGTTATCCGCAACTTCTCCTTT 480
|||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 678 AGATCAGAGAAACAAATGTGTGCTATTGCTGCATCGAACGTTATCCGCAACTTCTCCTTC 737
Query 481 ATGCCTGATAATGAAGTTGTAATGGCTCAGCATCGTCATTGCTTAGAAACTGTTTTCCAG 540
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 738 ATGCCTGATAATGAAGTTGTAATGGCTCAGCATCGCCATTGCTTAGAAACTGTTTTCCAG 797
Query 541 TGCATACACGATCATATGACTGAGGATGAAGAGCTGGTCACAAACTCGCTCGAGACAATT 600
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 798 TGCATACACGATCATATGACCGAGGATGAAGAGCTGGTCACAAACTCGCTAGAGACAATT 857
Query 601 GTAAACCTAGCGCATTTGATGGATCTTCGAATTTTCAGCTCGCTTAAGCAGTCATACATT 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 GTAAACCTAGCGCATTTGATGGATCTTCGAATTTTCAGCTCGCTTAAGCAGTCATACATC 917
Query 661 AACATAAATGAGAAGAAAGCTGTTCAAGCTGTGGTCGGAATCCTCGATTCTTCCGTCAAA 720
||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 918 AACATAAATGAAAAGAAAGCTGTTCAAGCTGTGGTCGGAATCCTCAATTCTTCTGTCAAA 977
Query 721 GCTTGGAATTGTGCTGCTGCTGAATTACTGGGGCGTTTGATTATCAATCCGGACAATGAA 780
||||||||||||||||||||||| || || ||||||||||| ||||||||||||||||||
Sbjct 978 GCTTGGAATTGTGCTGCTGCTGAGTTGCTAGGGCGTTTGATAATCAATCCGGACAATGAA 1037
Query 781 CCTTTCATTAGTCCCTTAATTCCACAGATACACAAGCGACTAGTCGATCTCTTGAGCATA 840
|||||||||||||| |||||||| |||||||||||||||||| ||||||| |||||||||
Sbjct 1038 CCTTTCATTAGTCCTTTAATTCCGCAGATACACAAGCGACTAATCGATCTTTTGAGCATA 1097
Query 841 CAAGCCGTTGATGCACAAGCCGCAGCTGTTGGAGCACTCTACAACCTCGTGGAAGTTAAC 900
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1098 CAAGCCGTTGATGCACAAGCTGCAGCTGTTGGAGCACTCTACAATCTCGTGGAAGTTAAC 1157
Query 901 ATGGATTGCAGATTAAAGCTCGCAAGTGAGAGATGGGCGGTTGATAGATTGCTAAAAGTG 960
|||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 1158 ATGGATTGCAGATTAAAGCTAGCAAGTGAGAGATGGGCGGTTGATAGGTTGCTGAAAGTG 1217
Query 961 ATAAAGACTCCGCATCCAGTTCCAGAAGTATGCAGGAAAGCTGCAATGATACTTGAGAAC 1020
||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1218 ATAAAGACTCCGCATCCGGTTCCAGAAGTATGTAGGAAAGCTGCAATGATCCTTGAGAAC 1277
Query 1021 CTTGTCTCCGAGCCTCAAAACAGAGGATTGCTGCTCGCATACGAGAATGCGTTCGCTGAG 1080
|||||||| ||||||||||||||||||||||| ||||| || |||||||| |||||||||
Sbjct 1278 CTTGTCTCGGAGCCTCAAAACAGAGGATTGCTACTCGCGTATGAGAATGCTTTCGCTGAG 1337
Query 1081 CTACTTTTTCAAGATGGTAAGTATTCTGATTCATTTGCTAGGATTTTGTATGAACTCACT 1140
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1338 CTGCTTTTTCAAGAGGGTAAGTATTCTGATTCATTTGCTAGGATTTTGTATGAACTCACT 1397
Query 1141 GCTAGATCAAATAGCAGAGTGGCTTCAGCTAGAGGAATCTGGGGTATGTAAAAGTCT-CT 1199
|||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||| ||
Sbjct 1398 GCTAGATCTAATAGCAGAGTTGCTTCAGCTAGAGGAATCTGGGGCATGTAAAAGTCTTCT 1457
Query 1200 --AGATTAGTGGGTTTGATTAATTAAGTT-TGTTGTAAACTTTAATCATTTGCTATGTAT 1256
|||||||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 1458 CTAGATTAGTGGGTTTGATTAATTGA-TTGTGTTGTAAACTTTAATCATTTGCTATGTAT 1516
Query 1257 T----------TGTTA---AACAAA--GTAGATGGATTCTTCTCATTATTTCGCATAGCT 1301
| |||| |||||| ||||||||||||||||| | |||||||||
Sbjct 1517 TAAAAAAGCAGTGTTGTTGAACAAAAAGTAGATGGATTCTTCTC-T-----CGCATAGCT 1570
Query 1302 TCGACATGTGTGTT-TT-GATCTTTACTAAAAACAAATT-GAGATATATTATGATTCAAA 1358
||||||||||| || || ||||||||||||||||||||| ||||||| || |||||||||
Sbjct 1571 TCGACATGTGTTTTGTTTGATCTTTACTAAAAACAAATTTGAGATATTTTGTGATTCAAA 1630
Query 1359 TTG 1361
|||
Sbjct 1631 TTG 1633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67017727575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5