BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479810
Length=1342
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23000.1 | Symbols: CIPK7, SnRK3.10, PKS7, ATSRPK1, ATSR2 | ... 2060 0.0
AT4G14580.1 | Symbols: CIPK4, SnRK3.3 | CBL-interacting protein... 634 0.0
> AT3G23000.1 | Symbols: CIPK7, SnRK3.10, PKS7, ATSRPK1, ATSR2
| CBL-interacting protein kinase 7 | chr3:8172597-8174131 FORWARD
LENGTH=1535
Length=1535
Score = 2060 bits (1115), Expect = 0.0
Identities = 1250/1315 (95%), Gaps = 9/1315 (1%)
Strand=Plus/Plus
Query 34 CCGCCGCCATGGAATCACTTCCTCC-GCCGCAAAATCAAACATCTCCGGCAACAACTCCG 92
|||||||||||||||||||||| || ||||||||| ||| ||||||||||||||||||||
Sbjct 50 CCGCCGCCATGGAATCACTTCC-CCAGCCGCAAAACCAATCATCTCCGGCAACAACTCCG 108
Query 93 GCAAAAGCT-CTCCTCGGAAAATACGAACTCGGTCGTCGACTCGGTAGCGGAAGCTTCGC 151
|| ||| | ||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 109 GC-GAAGATCCTCCTTGGGAAATACGAACTCGGTCGTCGTCTCGGTAGCGGAAGCTTCGC 167
Query 152 GAAAGTTCATCTAGCTCGATCAATCGAATCCGACGAGCTCGTCGCCATTAAAATCATCGA 211
|||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 168 GAAAGTCCATTTAGCTCGATCAATCGAATCCGACGAGCTCGTCGCCGTTAAAATCATCGA 227
Query 212 GAAGAAGAAAACAATCGAATCAGGCATGGAACCAAGAATAATCAGAGAGATCGATGCGAT 271
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 228 GAAGAAGAAAACAATCGAATCCGGTATGGAACCAAGAATAATCAGAGAGATCGATGCGAT 287
Query 272 GCGTCGTCTTCGTCATCATCCAAACATACTTAAGATCCATGAAGTTATGGCAACCAAATC 331
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 288 GCGTCGTCTTCGTCATCATCCAAACATACTCAAGATCCATGAAGTTATGGCAACCAAATC 347
Query 332 TAAGATCTATCTCGTAATGGAACTCGCTTCCGGTGGTGAACTTTTCTCTAAAGTCCTCCG 391
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 348 TAAGATCTATCTCGTAATGGAACTCGCTTCCGGTGGTGAACTTTTCTCAAAAGTCCTCCG 407
Query 392 TCGTGGTCGTCTTCCTGAATCAACGGCGCGTCGTTACTTTCAACAACTAGCCTCCGCGCT 451
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 408 TCGTGGACGTCTTCCTGAATCAACGGCGCGTCGTTACTTTCAACAACTCGCCTCCGCTCT 467
Query 452 TAGATTCTCTCACCAAGACGGTGTCGCTCACCGTGATGTGAAACCACAGAATCTACTCTT 511
| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 468 TCGTTTCTCTCACCAAGACGGTGTCGCTCACCGTGATGTGAAACCTCAGAATCTACTCTT 527
Query 512 AGATCAGCAAGGTAACCTCAAGGTCTCTGACTTTGGTTTATCAGCTTTACCGGAACATCT 571
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 528 AGATGAGCAAGGTAACCTCAAGGTCTCTGACTTTGGTTTATCAGCTTTACCGGAGCATCT 587
Query 572 CCAAAACGGATTGCTTCACACGGCGTGTGGTACTCCGGCTTACACAGCTCCGGAGGTTAT 631
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 588 ACAAAACGGATTGCTTCACACGGCGTGTGGTACTCCGGCTTATACAGCTCCGGAGGTTAT 647
Query 632 TTCGCGGCGAGGATACGACGGAGCGAAAGCTGATGCGTGGTCTTGTGGTGTGATTTTGTT 691
||| ||| | |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 648 TTCACGGAGGGGATACGACGGAGCAAAAGCTGATGCGTGGTCTTGTGGTGTGATTTTGTT 707
Query 692 TGTTCTT-TTGGTTGGCGACGTTCCATTTGATGATTCGAATATCGCAGCGATGTATCGGA 750
|||| || ||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 708 TGTT-TTATTGGTTGGCGATGTTCCATTTGATGATTCGAATATCGCTGCGATGTATCGGA 766
Query 751 AGATTCATCGGAGAGATTATCGATTTCCGAGCTGGATTTCGAAACAAGCGAAATCGATAA 810
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 767 AGATTCATCGGAGAGATTATCGGTTTCCGAGCTGGATTTCGAAACAAGCTAAATCGATAA 826
Query 811 TCTATCAGATGTTAGATCCGAATCCAGTAACGAGGATGAGTATTGAAACAGTTATGAAGA 870
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 827 TCTATCAGATGTTAGATCCGAATCCAGTAACGAGGATGAGTATTGAAACAGTGATGAAAA 886
Query 871 CGAATTGGTTCAAGAAATCTCTAGAAACTTCTGAGTTTCATCGTAACATTTTTGATTCGG 930
|||||||||||||||| |||||||| ||||||||||||||||||||| | ||||||||||
Sbjct 887 CGAATTGGTTCAAGAAGTCTCTAGAGACTTCTGAGTTTCATCGTAACGTCTTTGATTCGG 946
Query 931 AACCGGAGATGAAATCGAGTGTTAATTCGATTACTGCTTTCGATTTGATCTCGTTGTCGT 990
|| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 947 AAGTAGAGATGAAATCGAGTGTTAATTCGATTACTGCTTTTGATTTGATCTCGTTATCGT 1006
Query 991 CGGGGTTAGATCTTTCTGGATTGTTTGAGGTTAAGAAGAAGAAGGAGAGGAGATTCACCG 1050
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1007 CGGGATTAGATCTTTCTGGATTGTTTGAGGCTAAGAAGAAGAAGGAGAGGAGATTCACGG 1066
Query 1051 CGAAGGTTTCGGCTGTTGAAGTGGAGGAGAAAGCGAAGATGATTGGGGAGAATTTAGGTT 1110
|||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1067 CGAAGGTTTCGGGTGTTGAAGTGGAGGAGAAGGCGAAGATGATTGGGGAGAAGTTAGGTT 1126
Query 1111 ATGTAGTgaagaagaagatgaagaa-a-g-aaggagaagcgaaggttgttggattaggga 1167
||||||||||||||||||||| ||| | | ||||||||| ||||||||||||||||||||
Sbjct 1127 ATGTAGTGAAGAAGAAGATGATGAAGAAGGAAGGAGAAGTGAAGGTTGTTGGATTAGGGA 1186
Query 1168 gaggaagaaCTGCGATTGTGGTGGAAGCGGTTGAGTTAACGGTGGATGTTGTGGTGGTTG 1227
|||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1187 GAGGAAGAACTGTGATTGTGGTGGAAGCAGTGGAGTTAACGGTGGATGTTGTGGTGGTTG 1246
Query 1228 AAGTGAAAGTTGTTGAAGGTGAAGAAGATGATTCACGGTGGTTTGATTTGATTACAGAGC 1287
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1247 AAGTGAAAGTTGTTGAAGGTGAAGAAGATGATTCACGGTGGTCTGATTTGATTACTGAGC 1306
Query 1288 TTGAAGATATAGTTCTTTCATGGCACAATGACATCATGTAAATAGATTGTGACTT 1342
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 TTGAAGATATAGTTCTTTCATGGCACAATGACATCATGTAAATAGATTGTGACTT 1361
> AT4G14580.1 | Symbols: CIPK4, SnRK3.3 | CBL-interacting protein
kinase 4 | chr4:8367887-8369167 REVERSE LENGTH=1281
Length=1281
Score = 634 bits (343), Expect = 0.0
Identities = 924/1194 (77%), Gaps = 81/1194 (7%)
Strand=Plus/Plus
Query 101 TCTCCTCGGAAAATACGAACTCGGTCGTCGACTCGGTAGCGGAAGCTTCGCGAAAGTTCA 160
||| ||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||
Sbjct 48 TCTTCTCGGAAAATACGAACTCGGTCGTCGACTAGGAAGCGGAAGCTTCGCTAAAGTCCA 107
Query 161 TCTAGCTCGATCAATCGA-ATCCGACGAGCTCGTCGCCATTAAAATCATCGAGAAG-AAG 218
| ||||||| || ||| | ||| ||| ||||| || || ||||||||||| ||| ||
Sbjct 108 TGTAGCTCGTTCCATCTCCA-CCGGCGAACTCGTAGCTATCAAAATCATCGACAAGCAA- 165
Query 219 AAAACAATCGAATCAGGCATGGAACCAAGAATAATCAGAGAGATCGATGCGATGCGTCGT 278
||||| || || || || ||||| || ||||||||| |||||||||| |||||||| ||
Sbjct 166 AAAACCATAGATTCCGGTATGGAGCCGAGAATAATCCGAGAGATCGAAGCGATGCGCCGC 225
Query 279 CTTCGTCATC-ATCCAAACATACTTAAGATCCATGAAGTTATGGCAACCAAATCTAAGAT 337
|| | || | | |||||| | || || ||||| ||||| ||||| || ||||| |||||
Sbjct 226 CTCCA-CAACCACCCAAACGTCCTCAAAATCCACGAAGTCATGGCCACTAAATCCAAGAT 284
Query 338 CTATCTCGTAATGGAACT-CGCTTCCGGTGGTGAACTTTTCTCTAAAGTCCTCCG-T-CG 394
||| ||||| | ||| | ||| |||| || ||||| ||| | ||| || |||| | ||
Sbjct 285 CTACCTCGTCGTCGAA-TACGCCGCCGGAGGAGAACTCTTCACCAAACTCATCCGATTCG 343
Query 395 TGGTCGTCTTC-CTGAATCAACGGCGCGTCGTTACTTTC-AACAACTAGCCTCCGCGCTT 452
| || ||| | ||||| ||||||||||||| |||| ||||||| |||||||||||
Sbjct 344 -GC-CGCCTTAAC-GAATCGGCGGCGCGTCGTTA-TTTCCAACAACTCGCCTCCGCGCTC 399
Query 453 AGATTCT-CTCACCAAGACGGTGTCGCTCACCGTGATGTGAAACCACAGAATCTACTC-T 510
|| |||| | |||| ||||| ||||||| || || ||||| ||||||||||| ||| |
Sbjct 400 AGTTTCTGC-CACCGCGACGGAATCGCTCATCGCGACGTGAAGCCACAGAATCTCCTCCT 458
Query 511 TAGATCAGCAAGGTAACCTCAAGGTCTCTGACTTTGGTTTATCAGCTTTACCGGAACATC 570
| ||| ||||||| |||||||||||||| ||||||||| |||| ||||||||||| ||||
Sbjct 459 T-GATAAGCAAGGAAACCTCAAGGTCTCCGACTTTGGTCTATCGGCTTTACCGGAGCATC 517
Query 571 TCC--AA-AACGGATTGCTTCACACGGCGTGTGGTACTCCGGCTTACACAGCTCCGGAGG 627
|| |||||||||||||||||||| ||||| || |||||||| ||||| ||||| |
Sbjct 518 GAAGTAATAACGGATTGCTTCACACGGCATGTGGCACACCGGCTTATACAGCACCGGAAG 577
Query 628 TTATTTCGCGGCGAGGATACGACGGAGCGAAAGCTGATGCGTGGTCTTGTGGTGTGATTT 687
| ||| | | | |||| |||||||| || ||||||||||||||||| ||||||||| |||
Sbjct 578 TAATTGCTCAGAGAGGTTACGACGGTGCTAAAGCTGATGCGTGGTCGTGTGGTGTG-TTT 636
Query 688 -TGTTTGTTCTT-TTGGTTGGCGACGTTCCATTT-GATGATTCGAATATCGCAGCGATGT 744
| ||||||||| ||| | || ||||||| ||| |||||| | || || | || ||||
Sbjct 637 CTCTTTGTTCTTCTTGCT-GGTTACGTTCC-TTTCGATGATGCCAACATTGTTGCTATGT 694
Query 745 ATCGGAAGATTCATCGGAGAGATTATCGATTTCCGAGCTGGATTTCGAAACAAGCGAAAT 804
|| ||||||||||| |||||||| || |||||||||||||| ||||||| || ||
Sbjct 695 ATAGGAAGATTCATAAAAGAGATTACCGGTTTCCGAGCTGGATCTCGAAACCGGCTCGAT 754
Query 805 CGATAATCTATCAGATG-TTAGATCCGAATCCAGTA-ACGAGGATGAGTATTGAAACAGT 862
| || || ||| || || || ||||||||||| | | |||||||||||||| ||| | ||
Sbjct 755 CTATTATATATAAGTTGCTT-GATCCGAATCCGG-AGACGAGGATGAGTATAGAAGCTGT 812
Query 863 TATGAAGA-CGAATTGGTT-CAAGAAATCTCTAGAAACTTCTGAGTTTCA-TCGTAACAT 919
||| || || |||||| ||| ||||||||||| | ||| |||||||| || || |
Sbjct 813 GATGG-GAACGGTTTGGTTTCAA-AAATCTCTAGAGATTTCGGAGTTTCAGTC-TAGTGT 869
Query 920 TTTTGA-TTCGGAACCG------GAGAT-GAAATCGA-GT-GTT-AATTCGATTACTGC- 967
||||| || ||| | | |||| ||| ||| || | ||| ||||||||||
Sbjct 870 GTTTGAGTT-GGATCGGTTTCTTGAGAAAGAAG-CGAAGTCGAGCAATGCGATTACTGCG 927
Query 968 TTTCGATTTGATCTCGTTGTCGTCGGGGTTAGATCTTTCTGGATTGTTTGAG-GTTAAGA 1026
||| ||||||||||||||||| ||||| || |||||||| || ||||||||| | | ||
Sbjct 928 TTT-GATTTGATCTCGTTGTCATCGGGATTGGATCTTTCGGGGTTGTTTGAGAGG-AGGA 985
Query 1027 AGAAGAAGGAGAGGAGATTCACCGCGA-AGGTTTCGGCTGTT-GAAGTGGAGGAGAAAGC 1084
||| ||| |||| ||| || || |||| || | ||||| | || |||| |||||| ||
Sbjct 986 AGAGGAAAGAGAAGAGGTTTACGGCGAGAG-TGTCGGCGGAAAGA-GTGGTGGAGAAGGC 1043
Query 1085 GAAGATGATTGGGGAGAATTTAGGTTATGTAGTgaagaagaagatgaagaaagaaggaga 1144
| |||||| ||||| || ||||| | | ||| | | | || |||||| |||| |||
Sbjct 1044 GGGGATGATAGGGGAAAAGTTAGGGT-T-TAG--A-GT-G--GA-GAAGAAGGAAG-AGA 1093
Query 1145 agcgaaggttgttggattagggaga-ggaagaaCTGCGATTGTGGTGGAAGCGGTTGAGT 1203
| ||||| || ||||| |||| | |||||||||||| | ||||| || | ||| ||||
Sbjct 1094 --CTAAGGTGGTGGGATT-GGGAAAAGGAAGAACTGCGGTGGTGGTTGAGGTGGTGGAGT 1150
Query 1204 TAACGGT-GGATGTTG-TGGTGGTTGAAGTGAAAGTTGT--TG-AAGGTGAAGA 1252
| ||| || |||| | |||| || ||||| ||||| || ||||||||||
Sbjct 1151 TTGCGGAAGG--GTTGGTTGTGGCGGATGTGAAGGTTGTGGTGGAAGGTGAAGA 1202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66063917220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5