BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479814
Length=1761
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23060.1 | Symbols: | RING/U-box superfamily protein | chr3... 1881 0.0
> AT3G23060.1 | Symbols: | RING/U-box superfamily protein | chr3:8200636-8203233
FORWARD LENGTH=1792
Length=1792
Score = 1881 bits (1018), Expect = 0.0
Identities = 1526/1759 (87%), Gaps = 84/1759 (5%)
Strand=Plus/Plus
Query 43 TCGATTCTCTCTGAGAAAA-CACCAATAAAGCTAGACACtttttttttGTGGGTTTG--- 98
||||||||||||||||||| || |||||||||||||||| |||||||||||||||||
Sbjct 76 TCGATTCTCTCTGAGAAAACCAACAATAAAGCTAGACAC-TTTTTTTTGTGGGTTTGTCT 134
Query 99 TGTTATTCGTACATGCACCATGCTGCGTTACGTGAAC---GAAGCTATATAATCAATAAA 155
| || ||||| ||||||||||| || ||||||||||| ||||||||||||||||| ||
Sbjct 135 TCTTCTTCGTTCATGCACCATGTTGTGTTACGTGAACGAAGAAGCTATATAATCAAT-AA 193
Query 156 ATCTTATCGATTTGTTGTGTTTTGGAATCGGAGAGAAAGATGCTAACAAAGGTGGAGACG 215
||||||||||||||||| |||| ||||||||||||||||||| ||||||||||| | |
Sbjct 194 ATCTTATCGATTTGTTGAGTTTGGGAATCGGAGAGAAAGATGTTAACAAAGGTGCTTA-G 252
Query 216 -AAAGTGGTTGAGCCAAAATTTGCTTGTCCGCTCTGCAAC-AATCGGTTTAAGGATGCCA 273
|| | |||| ||||| |||||||||| ||||| || |||| ||||||||||||||
Sbjct 253 TAAGGAGGTTAAGCCATGCCTTGCTTGTCCAATCTGC-ACTAATCCGTTTAAGGATGCCA 311
Query 274 CCACAATCTCCGAGTGTCTTCACACATTTTGCAGGAGCTGCATTCGTAACAAGTTCATAA 333
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 312 CCACAATCTCCGAGTGTCTCCACACCTTTTGCAGGAGCTGCATTCGTAACAAGTTCATAA 371
Query 334 ATGAGAGAGTGAAAGCTTGTCCAGTCTGCAACGTTAACCTCGGTGTTTTTCCTCTACATA 393
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 372 ATGAGAGAGTGAACGCTTGTCCAGTCTGCAACGTTAACCTCGGTGTTTTTCCTCTAGAGA 431
Query 394 AACTTCGGTCGGATTACAGTTGGCAAAG-TTTGAAGCTGAAAGTCGACCGGGCAA--A-- 448
||||||||||||||| || ||||| | | ||||||||||||| || |||| |||| |
Sbjct 432 AACTTCGGTCGGATTGCACTTGGC-AGGATTTGAAGCTGAAAATCTACCGAGCAATGATG 490
Query 449 G--A-C----GGAA---AGG--GT-TAA--G--GCAGCCTCTGTGAAATCTTCGAAAAAG 491
| | | ||| ||| | || | ||||| |||||||||||||||||||||
Sbjct 491 GAAAGCTTAAAGAAGGCAGGACCTAAAACTGTTGCAGCGTCTGTGAAATCTTCGAAAAAG 550
Query 492 AAGGGAAAATCTCTAACTTCACCAG-TGGTCTCTTCATCTAGAGTATCATCCTCACCTGA 550
||| ||||||||| ||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 551 AAGAGAAAATCTCGAACTTCA-CTGCGGGTCTCTTCATCTAGAGTATCATCCTCACCTGA 609
Query 551 TACTCCATTGAAACCACCCATTGTGGTTGTGGAGCCACCCATTGTGGTTGTGGAGGAGAA 610
|||||||||| ||||| ||| |||||||||||| ||||| | ||||||||||||||||||
Sbjct 610 TACTCCATTGGAACCAGCCAATGTGGTTGTGGAACCACCTAATGTGGTTGTGGAGGAGAA 669
Query 611 GCATAGGGAGACCGTACAAGCTCTTCAAAGCTCTCGTAAACCGATAATCACATTCAAGAA 670
|||||||||||||| | ||||||||||||| || | |||||||||||||| ||| ||||
Sbjct 670 ACATAGGGAGACCGTTCTAGCTCTTCAAAGCACTAGAAAACCGATAATCACGTTCCAGAA 729
Query 671 ACGTGGAAGAAAATCTTCACTCCCCAAGAAGTTTGATTCGAAACCGGAACCCGAACTGCC 730
|||||| |||||| |||||||||| |||||| ||||||||||||| ||||||||||||||
Sbjct 730 ACGTGGGAGAAAAGCTTCACTCCCGAAGAAGATTGATTCGAAACCAGAACCCGAACTGCC 789
Query 731 TCCTAAGGAGCCTGAAATTAAGAATTTCTTTGATCTGAACAACGAACCTGAAGACAATGG 790
||||||||||||| ||||||||||| | ||||| ||||||||||||||||||||||||||
Sbjct 790 TCCTAAGGAGCCTAAAATTAAGAATCTATTTGACCTGAACAACGAACCTGAAGACAATGG 849
Query 791 ATTGGATGAAGCTGAAGGATCGACATGTCAAGAATTCATACCAAAGGAGAACGATCTTTG 850
|||||| |||||||||||||| || | ||| ||| || ||||||||||||| ||||||||
Sbjct 850 ATTGGACGAAGCTGAAGGATCAACTTTTCAGGAAGTCGTACCAAAGGAGAAAGATCTTTG 909
Query 851 TAAGTCCTTGGATGCTAAGGAAGTAGCGC-CACTAAACATCAACGATACTCCTCCTGTTA 909
||| || | | || | | | | ||||||||||||||||||||||||| ||
Sbjct 910 TAA-ACC-TATTTTCTCTCTCTCT-G-TCACTCTAAACATCAACGATACTCCTCCTGATA 965
Query 910 TCGTTGAGCCAGTGTTAAGTTCGGATGGCGATACAGAGGAATCTGTTGAACCTATTCACA 969
|||||||||| | | |||||||||||| ||| |||||||||||||||||||||||||| |
Sbjct 966 TCGTTGAGCCTGAGATAAGTTCGGATGACGACACAGAGGAATCTGTTGAACCTATTCAGA 1025
Query 970 ACAAGTGTGTCGTGAATAGGGAAACAGAGGAAGTCCCTATTCAAGTGAATaaaaaaaCTG 1029
|||||||||| |||||||| |||||| ||||||| ||| ||||||||||| |||| | |
Sbjct 1026 ACAAGTGTGTTGTGAATAGAGAAACAAAGGAAGTTCCTGTTCAAGTGAATCAAAACAGTC 1085
Query 1030 TCCTTATTAGCTCTGATAGGGATACAGAGGACAACTCTGGTCAGAAACTGAAGAGCAAT- 1088
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1086 TCCTTATTAGCTCTGATAGGGATAGAGAGGACAACTCTGGTCAGAAACTGAAGACCAATG 1145
Query 1089 G-G-TGCTACCTCCAGATCAAGGAGGAAGAAAGGGAAGAAACCGGTGGAAAAGAGTTATT 1146
| | |||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||
Sbjct 1146 GTGCTGCTACCTCCAGATCAAGGAAGAAGAAAGGTAAGAAACCGGTGGAAAAGAGCTATT 1205
Query 1147 CTTTGAGACCCCGAAAAGACGGGAGGACGATTAATTCAGCAGCTAATAATACTACACCAG 1206
||||||||||||||| || | |||||||| ||||| |||||||| || |||||||||||
Sbjct 1206 CTTTGAGACCCCGAATAGGCAGGAGGACGGTTAATCCAGCAGCTGGTACTACTACACCAG 1265
Query 1207 AAGTTGCGGTTACCGTGGAAGAGGAAAAGAAAGTT---GAAGGACGTAACACCAATGCAG 1263
||| | ||||| ||||||||||||| | ||||||| ||||||||||||| |||| |||
Sbjct 1266 AAGCTCCGGTTTCCGTGGAAGAGGAGATGAAAGTTGAAGAAGGACGTAACAACAATCCAG 1325
Query 1264 TTTGGTTTTCGTTAATGCCTTCCAAGACTCAGAACATTGAAATGCTACTTCCACCGATCA 1323
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 TTTGGTTTTCACTAAAGCCTTCCAAGACTCAGAACATTGAAATGCTACTTCCACCGATCA 1385
Query 1324 ACGCTCGCTGCATAAGAGTGAAAGATAGAAACATGACTGTCTCATATCTCAAGAAGTATC 1383
|||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1386 CCGCTTGCTGCATAAGAGTAAAAGATAGCAACATGACTGTCTCATATCTCAAGAAGTATC 1445
Query 1384 TAATGGTGAAGCTCGGTCTCGAAAGCGAAGACCAAGTGGAGGTATGGCTAAGGAATGAGC 1443
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 1446 TAATGGTGAAGCTCGGTCTCGAAAGCGAAGACCAAGTGGAGATATGGTTAAGGGATGAGC 1505
Query 1444 CATTGTGTTCGTCACTGACGCTACATAGCTTGGTGGATTGGTGGGTCCAAACTACTCCAT 1503
|| |||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||
Sbjct 1506 CAGTGTGTTCGTCACTGACACTACATAACTTGGTGGATTGGTGGGTCCAAACAACTCCAT 1565
Query 1504 TGCCTGAGCGACGAAGCGCCATGGTCGGAAGCTCCGCTGCTGATTTCCTCATGAATCTCC 1563
|||||||||||| |||||| ||||||||||||||||||||||| ||| ||||| |||||
Sbjct 1566 TGCCTGAGCGACAAAGCGCGATGGTCGGAAGCTCCGCTGCTGAATTCATCATGGATCTCT 1625
Query 1564 ATTACAGCTTCAAATCTGACGCctctggctctggctctggctctggctctggctttggct 1623
||||||||||||||||||||||||||| ||||||||||| ||||| | || ||
Sbjct 1626 ATTACAGCTTCAAATCTGACGCCTCTGACTCTGGCTCTGCCTCTGAATAA---TT---CT 1679
Query 1624 ctggctctgactctgAATAATTCTTCTCAGAACTTTAAACTTTTCTTCTTCTCTTTAAAC 1683
| ||| | ||| |||| | ||||||| || |||||||| ||||
Sbjct 1680 -T--CTC--A----GAA-----CTTC--A-AACTTTA--CT---CTTCTTCT----AAAC 1713
Query 1684 TCATTTCTTGCAGAATAAGTTTCCTTTT-AAAGACTTGCTAGTTTTAGCATCTTTCTTTA 1742
||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||
Sbjct 1714 TCATTTCTTGCAGAATAAGTTTC-TTTTGAAAGACTT-CTAGTTTTAGCATCTTTCTTTA 1771
Query 1743 TTTAATTATTGCTGAGACC 1761
|||||| ||||||||||||
Sbjct 1772 TTTAATAATTGCTGAGACC 1790
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87097945575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5