BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479818
Length=823
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23100.1 | Symbols: XRCC4 | homolog of human DNA ligase iv-b... 1219 0.0
AT1G61410.1 | Symbols: | DNA double-strand break repair and VJ... 1120 0.0
AT3G23109.1 | Symbols: | Pseudogene of AT1G61410; tolA protein... 292 3e-78
> AT3G23100.1 | Symbols: XRCC4 | homolog of human DNA ligase iv-binding
protein XRCC4 | chr3:8220682-8222148 FORWARD LENGTH=991
Length=991
Score = 1219 bits (660), Expect = 0.0
Identities = 769/823 (93%), Gaps = 2/823 (0%)
Strand=Plus/Plus
Query 1 ATTATGATCGGAGTTGACTCAAAATCTTCGTCGGCGACTTTGATTTGAAAACAATGGTTG 60
||||||||||||||||||||||||||||||||| ||||||| | | | ||||||||||||
Sbjct 37 ATTATGATCGGAGTTGACTCAAAATCTTCGTCGACGACTTTTA-TCG-AAACAATGGTTG 94
Query 61 AATCGGAGAAAACGAAACACACATGTCTCCGACTCGAAATCTCCGGCGCCGATCCAATTT 120
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 95 AATCGGAGAAAACGAAACACACTTGTCTCCGTCTCGAAATCTCCGGCGCCGATCCAATTT 154
Query 121 TCGTCAAAGGAACTTGGCACCACTCTCGTTTCGATATCTCCGTCACCGATGGCTCCTCCT 180
|||||||||| |||||||| | ||||||||||||||||||||||||||||| |||||||
Sbjct 155 TCGTCAAAGGCACTTGGCATAATTCTCGTTTCGATATCTCCGTCACCGATGGTTCCTCCT 214
Query 181 CTTGGATTTGCAATGCGACGGAGGAGGAAGTGGCGGAGAGAGCAGCACAATGGGATCAGC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 215 CTTGGATTTGCAATGCGACGGAGGAGGAAGTGGCGGAGAGAGCAGCACAATGGGACCAGC 274
Query 241 CTGTATCGGAGTATTTAGAGCTCGCTGAACGTTACTTAGGGTTTCAACAGCCAAATTCTG 300
|||| || ||||||||| ||||||| || | ||||||||||||||||| || ||||| |
Sbjct 275 CTGTGTCAGAGTATTTAAAGCTCGCCGAGCAATACTTAGGGTTTCAACAACCTAATTCGG 334
Query 301 TCTATGGATTCTCTGATGCTCTTGAGGGATCTAAACGGCTCTCTTGGACGTTTGAGAAGG 360
||||| | ||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 335 TCTATAGTTTCTCCGATGCTCTAGAGGGATCTAAACGGCTCTCTTGGACGTTTGAGAAGG 394
Query 361 AAGGGACTAAACTTGAGTGGAGGTGGAAGTGTAAACCATCACATGATAGCAAGAAGATCA 420
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 395 AAGGGACTAAACTTGAGTGGAGGTGGAAATGTAAACCATCAGATGATAGCAAGAAGATCA 454
Query 421 CTGTTGGGATCTTGGATTTTCTTATGGAGGCTAATATAAGGCTAAGTGAAGAAGTTGTGA 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 455 CTGTTGGGATCTTGGATTTTCTTATGGAGGCTAACATAAGGCTAAGTGAAGAAGTGGTGA 514
Query 481 ACAAGACGAGATCTTTTGAGAAGATGAAAAGTGAAGCTGAGAGATGTCTCGCACAAGGTG 540
||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||
Sbjct 515 ACAAGACGAGATCTTTTGAGAAGATGAGAAGTGAAGCTGAGAGATGTCTAGCGCAAGGTG 574
Query 541 AAAAACTCTGCGATGAAAAAACAGAGTTTGAGAATGCAACTTATGCAAAGTTTCTTTCTG 600
|||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 575 AAAAACTCTGTGACGAAAAAACAGAGTTTGAGAGTGCAACTTATGCAAAGTTTCTTTCTG 634
Query 601 TTTTAAATTCAAAGAAGGCGAAACTGAGAGCACTAAGGGACAAAGGAGATTCAGTGAGAG 660
|||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 635 TTTTAAATGCAAAGAAGGCAAAACTGAGAGCACTAAGGGACAAAGAAGATTCAGTGAGAG 694
Query 661 CAGTTGAGGAGGAAGAGTCGACAGACAAAGCTGAAAGCTTTGACAGTGGAAGAAGTGACA 720
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 695 TAGTTGAGGAGGAAGAGTCGACAGACAAAGCTGAAAGCTTTGAGAGTGGAAGAAGTGATG 754
Query 721 ATGAGCAGAGCGAGGAAGAAGCCTCAAAGAAGGCATCAAGCAGCAAAGCCCGTGGCCGAA 780
||||| |||||||||||||||||||||| |||||| |||||||||||||||||||| | |
Sbjct 755 ATGAGAAGAGCGAGGAAGAAGCCTCAAAAAAGGCAACAAGCAGCAAAGCCCGTGGCGGGA 814
Query 781 AGAGAGCTGTACGCAGCTAAAAGATTCCCCTGCCTTGAGATTT 823
||||||||| ||| |||||| ||||| ||||||| ||||||||
Sbjct 815 AGAGAGCTGCACGAAGCTAAGAGATTGCCCTGCCGTGAGATTT 857
> AT1G61410.1 | Symbols: | DNA double-strand break repair and
VJ recombination XRCC4 | chr1:22658552-22659461 REVERSE LENGTH=910
Length=910
Score = 1120 bits (606), Expect = 0.0
Identities = 726/783 (93%), Gaps = 12/783 (2%)
Strand=Plus/Plus
Query 49 AAACAATGGTTGAATCGGAGAAAACGAAACACACATGTCTCCGA-CTCGAAATCTCCGGC 107
|||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct 5 AAACAATGGTTGAATCGGAGAAAACGAAACACACATGTCTCC-ATCTTGAAATCTCCGGC 63
Query 108 GCCGATCCAATTTTCGTCAAAGGAACTTGGCACCACTCTCGTTTCGATATCTCCGTCACC 167
|||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct 64 GCCGATCCAATTTTCGTCAAAGGAACATGGTATCACTCTCGTTTCGATATCTCCGTCACC 123
Query 168 GATGGCTCCTCCTCTTGGATTTGCAATGCGACGGAGGAGGAAGTGGCGGAGAGAGCAGCA 227
|||||||||| | |||||| ||||||||||||||||||||| || |||||||||||||
Sbjct 124 GATGGCTCCTTCACTTGGACTTGCAATGCGACGGAGGAGGAGGTAGCGGAGAGAGCAG-- 181
Query 228 CAATGGGATCAGCCTGTATCGGAGTATTTAGAGCTCGCTGAACGTTACTTAGGGTTTCAA 287
|||||||| ||||||||||| ||||||||||||||||| || | ||||||||||||||
Sbjct 182 CAATGGGACCAGCCTGTATCTGAGTATTTAGAGCTCGCCGAGCAATACTTAGGGTTTCAG 241
Query 288 CAGCCAAATTCTGTCTATGGATTCTCTGATGCTCTTGAGGGATCTAAACGGCTCTCTTGG 347
||||| ||||| |||||||| ||||| |||||| ||||||||||||||||||||||||||
Sbjct 242 CAGCCTAATTCGGTCTATGGTTTCTCCGATGCTATTGAGGGATCTAAACGGCTCTCTTGG 301
Query 348 ACGTTTGAGAAGGAAGGGACTAAACTTGAGTGGAGGTGGAAGTGTAAACCATCACATGAT 407
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 302 ACGTTTGAGAAGGAAGGGACTAAACTTGAGTGGAGGTGGAAATGTAAACCATCAGATGAT 361
Query 408 AGCAAGAAGATCACTGTTGGGATCTTGGATTTTCTTATGGAGGCTAATATAAGGCTAAGT 467
|||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||
Sbjct 362 AGCAAGAAGATCACTGTTAGGATTTTGGATTTTCTTATGGAGGCTAACATAAGGCTAAGT 421
Query 468 GAAGAAGTTGTGAACAAGACGAGATCTTTTGAGAAGATGAAAAGTGAAGCTGAGAGATGT 527
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 422 GAAGAAGTTGTGAACAAGACGAGATCGTTTGAGAAGATGAAAAGTGAAGCTGAGAGATGT 481
Query 528 CTCGCACAAGGTGAAAAACTCTGCGATGAAAAAACAGAGTTTGAGAATGCAACTTATGCA 587
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 482 CTCGCGCAAGGTGAAAAACTATGCGATGAAAAAACAGAGTTTGAGAATGCAACTTATGCA 541
Query 588 AAGTTTCTTTCTGTTTTAAATTCAAAGAAGGCGAAACTGAGAGCACTAAGGGACAAAGGA 647
||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
Sbjct 542 AAGTTCCTTTCTGTTTTAAATGCAAAGAAGGCGAAACTGAGAGCAGTAAGGGACAAAGAA 601
Query 648 GATTCAGTGAGAGCAGTTGAGGAGGAAGAGTCGACAGACAAAGCTGAAAGCTTTGACAGT 707
|||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||
Sbjct 602 GATTCAGTGAGAGCAGTTGAGGAGGAAGAGTCGACATACAAAGCTGAAAGCTTCGAGAGT 661
Query 708 GGAAGAAGTGACAATGAGCAGAGCGAGGAAGAAGCCTCA-AAGAAGGCATCAAGCAGCAA 766
||||||||||| |||||||||| | ||||||||| ||| || |||||| ||||||||||
Sbjct 662 GGAAGAAGTGATGATGAGCAGAGTGGGGAAGAAGCGTCAGAA-AAGGCAACAAGCAGCAA 720
Query 767 AGCCCGTGGCCGAAAGAGAGCTGTACGCAGCTAA-A---AGA--TTCCCCTGCCTTGAGA 820
|||||||||| |||||||||||| ||| |||||| | ||| ||||||||||||||||
Sbjct 721 AGCCCGTGGCGGAAAGAGAGCTGCACGGAGCTAAGACTTAGAGATTCCCCTGCCTTGAGA 780
Query 821 TTT 823
|||
Sbjct 781 TTT 783
> AT3G23109.1 | Symbols: | Pseudogene of AT1G61410; tolA protein-related
| chr3:8226791-8227003 FORWARD LENGTH=213
Length=213
Score = 292 bits (158), Expect = 3e-78
Identities = 194/212 (92%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 589 AGTTTCTTTCTGTTTTAAATTCAAAGAAGGCGAAACTGAGAGCACTAAGGGACAAAGGAG 648
|||||||||||||||||||| |||||||||| |||||||||||||| |||||||||| ||
Sbjct 2 AGTTTCTTTCTGTTTTAAATGCAAAGAAGGCAAAACTGAGAGCACTGAGGGACAAAGAAG 61
Query 649 ATTCAGTGAGAGCAGTTGAGGAGGAAGAGTCGACAGACAAAGCTGAAAGCTTTGACAGTG 708
||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 62 TTTCAGTGAGAGTAGTTGAGGAGGAAGAGTCGACAGACAAAGCTGAAAGCTTCGAGAGTG 121
Query 709 GAAGAAGTGACAATGAGCAGAGCGAGGAAGAAGCCTCAAAGAAGGCATCAAGCAGCAAAG 768
|||||||||| ||||| |||||||||||||||||||||| |||||| ||||||||||||
Sbjct 122 GAAGAAGTGATGATGAGAAGAGCGAGGAAGAAGCCTCAAAAAAGGCAACAAGCAGCAAAG 181
Query 769 CCCGTGGCCGAAAGAGAGCTGTACGCAGCTAA 800
|||||||| | ||||||||| ||| ||||||
Sbjct 182 CCCGTGGCGGGAAGAGAGCTACACGAAGCTAA 213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40086849306
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5