BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479823
Length=1076
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23130.1 | Symbols: SUP, FON1, FLO10 | C2H2 and C2HC zinc fi... 1652 0.0
> AT3G23130.1 | Symbols: SUP, FON1, FLO10 | C2H2 and C2HC zinc
fingers superfamily protein | chr3:8242302-8243372 FORWARD LENGTH=1071
Length=1071
Score = 1652 bits (894), Expect = 0.0
Identities = 1020/1079 (95%), Gaps = 16/1079 (1%)
Strand=Plus/Plus
Query 5 tctctctctctctctctAAGAGACAGATAGACATAG----ATCTTAGATTTTTCCCAGGG 60
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 2 TCTCTCTCTCTCTCTCTAAGAGACAGACAGACATAGATATATCTTAGATTTTTCCCAGGG 61
Query 61 GAAAAAAGTGAGTTCATCTTTTCAGATCTTACAAACACTTTGCTTTTGTAAACTGATGTG 120
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 62 GAAAAAAGTGAGTTCATCTTTTCAGATCTTACAAACACTTTGCTTTTATAAACTGATGTA 121
Query 121 CCACAAATCATTACTAGTACTATCTTAATTATCTTCACAAttttttttATCTACCATAGC 180
||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||
Sbjct 122 CCACAAATCATTACTAGTACTATCTTAATTATCTTTACAA-TTTTTTTATCTAGCATAGC 180
Query 181 CAAAAAGAAAGAGCTTTCACATATGGAGAGATCAAACAACATAGAGTTGAGGAACAGCTT 240
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 CAAAAAGAAAGAGCTTGCACATATGGAGAGATCAAACAGCATAGAGTTGAGGAACAGCTT 240
Query 241 CTATGGCCGTGCAAGAACTTCACCATGGAGCTATGGAGATTATGATAATTACCAACAGGA 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 CTATGGCCGTGCAAGAACTTCACCATGGAGCTATGGAGATTATGATAATTGCCAACAGGA 300
Query 301 TCATGAGTATCTTCTAGGGTTTTCATGGCCACCCAGATCCTACACTTGCAGCTTCTGCAA 360
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 301 TCATGATTATCTTCTAGGGTTTTCATGGCCACCAAGATCCTACACTTGCAGCTTCTGCAA 360
Query 361 AAGGGAATTCAGATCGGCTCAAGCACTTGGTGGTCACATGAATGTTCACAGAAGAGACAG 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 361 AAGGGAATTCAGATCGGCTCAAGCACTTGGTGGCCACATGAATGTTCACAGAAGAGACAG 420
Query 421 AGCCAGACTCAGATTACAACAGTCTTCATCATCATCCTCAACACCTTCTCCTCCTTACCC 480
||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 421 AGCAAGACTCAGATTACAACAGTCTCCATCATCATCTTCAACACCTTCTCCTCCTTACCC 480
Query 481 TAACCCTAATTACTCTTACTCTTCCATGGCAACCTCTCCTCCTCCTCACCATTCTCCTCT 540
||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||
Sbjct 481 TAACCCTAATTACTCTTACTCAACCATGGCAAACTCTCCTCCTCCTCATCATTCTCCTCT 540
Query 541 AACCCTATTTCCAACCCTTTCTCCTCCGTCATCACCAAGATATAGGCCAGGTTTGGTCCG 600
||||||||||||||||||||||||||| || ||||||||||||||| |||||||| ||||
Sbjct 541 AACCCTATTTCCAACCCTTTCTCCTCCATCCTCACCAAGATATAGGGCAGGTTTGATCCG 600
Query 601 TTCCTTGAGCCCCAAGTCAAAACATACACCAGAAAACGCTTGTGAA-ACTGAA-AAATCT 658
||||||||||||||||||||||||||||||||||||||||||| || ||| || |||||
Sbjct 601 TTCCTTGAGCCCCAAGTCAAAACATACACCAGAAAACGCTTGT-AAGACT-AAGAAATCA 658
Query 659 TCTCTTTTAGTGGAGGCTGGAGAGGCTAAAAGGTTCACCAGTAAAGATGCTTGCAAGATC 718
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 659 TCTCTTTTAGTGGAGGCTGGAGAGGCTACAAGGTTCACCAGTAAAGATGCTTGCAAGATC 718
Query 719 TTGAGGAATGATGATATCATTAGCTTGGAGCTTGAGATTGGTTTGATCAAAGAATCGGAG 778
||||||||||||| ||||| |||||||||||||||||||||||||| || ||||| |||
Sbjct 719 CTGAGGAATGATGAAATCATCAGCTTGGAGCTTGAGATTGGTTTGATTAACGAATCAGAG 778
Query 779 CAAGATCTGGATCTAGAACTCCGTTTGGGTTTCGCTTAATTAGATGGTAATAATTTTATC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 779 CAAGATCTGGATCTAGAACTCCGTTTGGGTTTCGCTTAATTAGATGGTAATAACTTTATC 838
Query 839 CTTAAAAGGATTTGAAGTTCACAATTCTAGAAGATATGCCGCTTCTCAAAGGTTAATTAG 898
| |||| ||||| ||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 839 CATAAA-GGATTCGAAGTTCACAATTCTAGAAGATATGATGCTTCTCTAAGGTTAATTAG 897
Query 899 TTTCATCGATATGAAATTCTCTAAGCTTGCTAATTAGTAGAACGTTATA-TATAGTCAAT 957
||||||| |||||||||||||||||||||||| |||||||||||||||| | | | | |
Sbjct 898 TTTCATCCATATGAAATTCTCTAAGCTTGCTATTTAGTAGAACGTTATAGT-T-G--A-T 952
Query 958 TATATGATTATAGTATAAGCTATAAGCTTGCGTTAGATGTTATATAATATTTATGCGCTT 1017
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 953 TATATGATTATAGTATAAGCTATAAGCTTGCGTTAGATGTTATATAATATGTATGCGCTT 1012
Query 1018 ACTACCGTTTTATGTATGACAATGGATACAATTTTGTCTCCGTAATAATTGTTTATCTC 1076
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1013 GTTACCGTTTTATGTATGACAATGGATACAATTTTGTCTCCTTAATTATTGTTTATCTC 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52710572250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5