BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479826
Length=2089
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23160.1 | Symbols: | Protein of unknown function (DUF668) ... 2952 0.0
> AT3G23160.1 | Symbols: | Protein of unknown function (DUF668)
| chr3:8259855-8262028 REVERSE LENGTH=2174
Length=2174
Score = 2952 bits (1598), Expect = 0.0
Identities = 1922/2069 (93%), Gaps = 60/2069 (3%)
Strand=Plus/Plus
Query 58 CTTCTTCTTCACCACTTTTACTTTCTCCTTCTCCAATCCCTC-AAAAGCTCACATCAAT- 115
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 129 CTTCTTCTTCACCACTTTTACTTTCTCCTTCTCCAATCCCTCAAAAAGCTCACATCAATG 188
Query 116 G-----------------G-ACCGCCCATAATCCCCAATGATTAAACCCTTTTCATTTCT 157
| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 189 GTACATCTTCTTTTTCAAGTACCGCCCATAATCCCCAATGATTAAACCCTTTTCATTTCT 248
Query 158 TCGTTCCTCGAGAAAGCTAAATGTCTTAATC-AAAAACCCTTTTCtttttttCCACGGAT 216
|| ||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 249 TCATTCCTCGAGAAAGTTAAATGTCATAATCTAAAAACCCTTTTCTTTTTTTCCACGGAT 308
Query 217 CTGTTCTTAATCTTCCATAAAGATTCAAACTTTAC-TCGAAATTG-TTTCAAAGTTTCGA 274
|||||||||||| |||||||||| ||||||||| | | ||||||| ||||||||||||||
Sbjct 309 CTGTTCTTAATC-TCCATAAAGACTCAAACTTT-CTTTGAAATTGTTTTCAAAGTTTCGA 366
Query 275 TTTTTACAATGGTTTCAGAAGCTTGGATTGTGAAAATGAGAAACCAAGTAAGTGCTAATC 334
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 367 TTTTTACAATGGTTTCAGAAGCTTGGATTGTGAAAATGAGAAACCAAGTAAGTTCTAATC 426
Query 335 TCAAACACGCTCTTCTTCTTGAA---TCTTCCACTAAGAAAACCCCTAAA--AGCTCTTC 389
|||| |||||||||||||||||| |||||||||||||||||||||||| || || ||
Sbjct 427 TCAAGCACGCTCTTCTTCTTGAATCTTCTTCCACTAAGAAAACCCCTAAACCAG-TC-TC 484
Query 390 TCTTCCTAAACAAACAATTGGGATCTTATCTTTTGAAGTAGCTAACATTATGTCCAAAAC 449
||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| |||||
Sbjct 485 TCTTCCTAAACAAACAATTGGAATCTTATCTTTCGAAGTAGCTAACGTTATGTCTAAAAC 544
Query 450 CATTCACCTTCACCGTTCTCTGTCCGATACAGAGATCTCTAAGCTCAAATCCGAGGTTTT 509
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 545 CATTCACCTTCACCGTTCTCTGTCCGATACAGAGATCTCTAAGCTTAAAGCCGAGGTTTT 604
Query 510 TCGGTCTGAAGGAGTTAGAAATCTTGTTTCTTCCGATGAGAATCATCTTCTT-GATCTCG 568
|| || |||||||||||||| ||||| ||||||||||||||||||||| || ||||||
Sbjct 605 TCACTCGGAAGGAGTTAGAAAGCTTGTATCTTCCGATGAGAATCATCTT-TTAGATCTCT 663
Query 569 CTGTCTCTGAGAAGCTTGATGATTTGAGCCGTGTAGCTAGTGTTGTGTCTAGGTTAGGTA 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 CTGTCTCTGAGAAGCTTGATGATTTGAGCCGTGTAGCTAGTGTTGTGTCTAGGTTAGGTA 723
Query 629 AGAAATGTAATGAACCTGCTTTACAAGGATTTGAGCATGTTTATGAAGATATAGTGAATG 688
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 AGAAATGTAACGAACCTGCTTTACAAGGATTTGAGCATGTTTATGAAGATATAGTGAATG 783
Query 689 GGGTTATTGATTTTAGGAAGTTAGGGTTCTTGGTTAAAGATATGGAATCTATGGTTAAGA 748
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 GTGCGATTGATTTTAGGAAGTTAGGGTTCTTGGTTAAAGATATGGAATCTATGGTTAAGA 843
Query 749 AGATGGAGAGATTTGTGAATGCTACTTGTAGTTTGTATTGTGAAATGGAAGTGATGAATG 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 AGATGGAGAGATTTGTGAATGCTACTTGTAGTTTGTATTGTGAAATGGAAGTGATGAATG 903
Query 809 AGCTTGAACAAGCTATAGTGAAGCTTCAGAGAAGTCAGCAACATCAAGAAAGTGTTAAAG 868
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 904 AGCTTGAACAAGCTATAGTGAAGCTTCAGAGAAGTCAGCAGCATCAAGAGAGTGTTAAAG 963
Query 869 CTTTTGAACAGAAGCTTATGTGGCAGAGACAAGACTTGA-GAGGTCTTAGAGATGGTTCA 927
||||||||||||||||||||||||||||||| ||| ||| ||| |||||||||||||||
Sbjct 964 CTTTTGAACAGAAGCTTATGTGGCAGAGACAGGACGTGAAGAG-TCTTAGAGATGGTTCG 1022
Query 928 TTGTGGAACCAAACTTATGATAAGGTTGTTGAGATGTTGGCTAGAACTGTTTGTACTATT 987
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1023 TTGTGGAACCAAACTTATGATAAGGTTGTTGAGATGTTGGCTAGGACTGTTTGTACTATT 1082
Query 988 TATGGTAGGATTGAAACTGTTTTTGGTGGTTTGGGTTTGAGAGTGAAAAAGGATGTGACT 1047
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1083 TATGGTAGGATTGAAACTGTTTTTGGTGGGTTGGGTTTGAGAGGGAAAAAGGATGTGACT 1142
Query 1048 TTGAAGAGAGATCGTAGCAAGAATGAAGCGAGTAAGGTTGTTAACTCGAGGTCTGTTGCG 1107
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1143 TTGAAGAGAGATCGTAGCAAGAATGAAGCGAGTAAGGCTGTTAACTCAAGGTCTGTTGCG 1202
Query 1108 GGTTTTAAGGATTCGAGGAGAAGTGAAGCGGAGGAGTTTACGCGTGCAGGGGATTTTAAT 1167
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 1203 GGTTTTAAGGATTCGAGGAGAAGCGAAGCGGATGAGTTTACGCGTGCAGGGGATTTCAAT 1262
Query 1168 TTTCCTTGTGGGACTAATCCTGGTAGGATGTTCATGGAATGTCTTGCTATGAATAGGACT 1227
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 TTCCCTTGTGGGACTAATCCTGGTAGGATGTTCATGGAATGTCTTGCTATGAATAGGACT 1322
Query 1228 ATTGGtgatgatgatgatgatgaagatga---tgC---TCGGGTTACATTTCCTTTGAGT 1281
||||||||||||||||||||||| ||||| || |||| |||||||||||||||||
Sbjct 1323 ATTGGTGATGATGATGATGATGATGATGAAGATGGGGGTCGGATTACATTTCCTTTGAGT 1382
Query 1282 ACAGCTCGGATGATTCGGACTAGTAAGTTTGGTTTCAAAAGCAGGTTAACTCAACATGCT 1341
|||||| |||||||||||| || |||||||||||| || |||||||||||||||||||||
Sbjct 1383 ACAGCTAGGATGATTCGGAGTAATAAGTTTGGTTTTAAGAGCAGGTTAACTCAACATGCT 1442
Query 1342 TCAGCTTCAACGATTGGAGGTTCTGCTTTATCATTGCACTATGCGAATGTTGTGATTGTG 1401
||||||||||| |||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 1443 TCAGCTTCAACTATTGGAGGATCTGCTTTATCTTTGCACTATGCAAATGTTGTGATTGTG 1502
Query 1402 GTAGAGAAGCTTCTCAAGTACCCTCATCTAATAGGCGAAGAAGCAAGAGACGATCTTTAC 1461
||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1503 GTAGAAAAGCTTCTTAAGTACCCTCATCTAATAGGCGAAGAAGCAAGAGATGATCTTTAC 1562
Query 1462 CAAATGTTACCAACGAGTTTGAAAACAACGCTCAAAGCCAATCTTAGATCGTACTTGAAG 1521
||||||||||||||||||||||| |||||||| || || | ||| ||||| |||||||||
Sbjct 1563 CAAATGTTACCAACGAGTTTGAAGACAACGCTTAAGGCTAGTCTAAGATCATACTTGAAG 1622
Query 1522 AACATTTCGATATATGACGCTCCTCTAGCTCACGATTGGAAAGAAACAATAGACGGTATA 1581
||||||||||| || |||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1623 AACATTTCGATCTACGACGCTCCTCTAGCTCACGACTGGAAAGAAACCATAGACGGTATA 1682
Query 1582 CTGTCCTGGCTTGCACCTTTAGCTCACAACATGATCCGGTGGCAGAGCGAACGCAACTTC 1641
|| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1683 CTTTCTTGGCTTGCTCCTTTAGCTCACAACATGATCCGGTGGCAGAGCGAACGCAACTTC 1742
Query 1642 GAGCAGAATAATCAGATCGTGAAGCGAACTAATGTTCTTCTACTTCAGACGCTTTACTTT 1701
|||||| | |||||||| |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1743 GAGCAGCAGAATCAGATTGTGAAGCGAACTAACGTTCTTCTACTTCAGACTCTTTACTTT 1802
Query 1702 GCTGATAGAGAGAAGACAGAAGCTGCCATTTGTAAACTTCTTGTCGGGTTAAACTACATT 1761
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1803 GCTGATAGAGAGAAGACAGAAGCTGCGATTTGTAAGCTTCTTGTCGGGTTAAACTACATT 1862
Query 1762 TGCCATTACGAACAGCAACAAAACGCGTTGCTGGATTGCGCGAGTAGCTTTGATTATGAA 1821
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1863 TGCCATTACGAACAACAACAAAACGCGTTGTTGGATTGCGCGAGTAGCTTTGATTATGAA 1922
Query 1822 GATTGTTTCGAGTGGCAGAGCCAATGCCGTGCAGCTTACTTGGACTAACAATTGGGGttt 1881
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1923 GATTGTTTTGAGTGGCAGAGCCAATGCCGTGCAGCTTACTTGGACTAACAATTGG--TTT 1980
Query 1882 tttttttcttctttctttcttcttcttAGTGTTGTTTTATAGATACATTTGTTTATGTTT 1941
|||||| ||| | |||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1981 TTTTTT-CTT-T--CTTTCTTCTTCTTAGTGTTGTTCTATAGATACATTTGTTTATGATT 2036
Query 1942 CAACACAATGTGAATATCTAAATCTCTAGTTTCGTTTGCATACATaaaaaaaaTGATTGT 2001
||||||| |||||||| |||||| |||||||| |||||||||||||||||| |||||||
Sbjct 2037 CAACACATTGTGAATA-CTAAATATCTAGTTTTGTTTGCATACATAAAAAA--TGATTGT 2093
Query 2002 GAAAATTGAAGTTCTATTGTTGATTACTCCAA-TCTTTAGTTAAACAATGTTAAGTGTAT 2060
||||||||||||||| |||| ||| ||||||| |||| ||||| ||||||||||||||
Sbjct 2094 GAAAATTGAAGTTCTGTTGTAGATAACTCCAAATCTT-AGTTAGACAATGTTAAGTGT-- 2150
Query 2061 GTGTGTTATTGAAGAATCTGAGCTTTTTT 2089
|| |||||||||| |||| ||||||
Sbjct 2151 GT-----ATTGAAGAATATGAGTTTTTTT 2174
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103563724335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5